scholarly journals Mitochondrial Genome Sequences of Diorhabda carinata and Diorhabda carinulata, Two Beetle Species Introduced to North America for Biological Control

2019 ◽  
Vol 8 (35) ◽  
Author(s):  
A. R. Stahlke ◽  
A. Z. Ozsoy ◽  
D. W. Bean ◽  
P. A. Hohenlohe
Keyword(s):  
Biological Control ◽  
North America ◽  
Mitochondrial Genome ◽  
Noncoding Region ◽  
Beetle Species ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Genome Assemblies

We announce the complete circularized mitochondrial genome assemblies of Diorhabda carinata and Diorhabda carinulata, beetle species introduced to North America for the biological control of invasive shrubs of the genus Tamarix L. (Tamaricaceae). The assemblies (16,232 and 16,298 bp, respectively) each comprise 13 protein-coding genes, 22 tRNAs, two rRNAs, and a noncoding region.

scholarly journals Draft Genome Sequences of Vibrio alginolyticus Strain S6-61 and Vibrio diabolicus Strain S7-71, Isolated from Corals in the Andaman Sea

2020 ◽  
Vol 9 (8) ◽  
Author(s):  
Sushanta Deb ◽  
Jhasketan Badhai ◽  
Subrata K. Das
Keyword(s):  
Draft Genome ◽  
Vibrio Alginolyticus ◽  
Andaman Sea ◽  
Biosynthesis Pathway ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Ectoine Biosynthesis ◽  
Pocillopora Verrucosa

We report the draft genome sequences of Vibrio alginolyticus strain S6-61 and Vibrio diabolicus strain S7-71, isolated from the corals Pocillopora verrucosa and Fungia danai, respectively. The genomes of strains S6-61 and S7-71 contain 4,880 and 4,641 protein coding genes, respectively, and harbor genes associated with the ectoine biosynthesis pathway.

scholarly journals Genome Sequences of Subcluster K5 Mycobacteriophages AlleyCat, Edugator, and Guillsminger

2017 ◽  
Vol 5 (45) ◽  
Author(s):  
Rodney A. King ◽  
Tina M. Slowan-Pomeroy ◽  
Jodi E. Thomas ◽  
Tithe Ahmed ◽  
Katie L. Alexander ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Soil Samples ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Bacteriophages AlleyCat, Edugator, and Guillsminger were isolated on Mycobacterium smegmatis mc2155 from enriched soil samples. All are members of mycobacteriophage subcluster K5, with genomes of 62,112 to 63,344 bp. Each genome contains 92 to 99 predicted protein-coding genes and one tRNA. Guillsminger is the first mycobacteriophage to carry an IS1380 family transposon.

scholarly journals Genome Sequences of Bacteriophages ClearAsMud and Kauala, Isolated from Microbacterium foliorum

2020 ◽  
Vol 9 (46) ◽  
Author(s):  
Heidi Lin ◽  
Michael Reeves ◽  
Melissa Acevedo ◽  
Kelsey Bass ◽  
Elizabeth Chau ◽  
...  
Keyword(s):  
Southern California ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Cluster EC ClearAsMud and cluster EA4 Kauala are lytic Siphoviridae bacteriophages that were isolated from soil in southern California using Microbacterium foliorum NRRL B-24224 as the host. The ClearAsMud and Kauala genomes are 52,987 bp and 39,378 bp, respectively, and contain 92 and 56 predicted protein-coding genes, respectively.

scholarly journals Genome Sequences of Cluster K Mycobacteriophages DrHayes, Urkel, and SamuelLPlaqson

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Kirk R. Anders ◽  
Alex M. Murphy ◽  
William F. Ettinger ◽  
Douglas Kempthorne ◽  
Charles Kittridge ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Room Temperature ◽  
Trna Gene ◽  
Soil Samples ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Mycobacteriophages DrHayes, Urkel, and SamuelLPlaqson were isolated from soil samples in Spokane, WA, using Mycobacterium smegmatis mc2155 grown at room temperature. The three genomes differ by only a few nucleotides, are 60,526 bp long, have 97 predicted protein-coding genes and one tRNA gene, and are members of subcluster K1.

scholarly journals Genome Sequences of Four Subcluster L2 Mycobacterium Phages, Finemlucis, Miley16, Wilder, and Zakai

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Christopher D. Herren ◽  
Alexandra Peister ◽  
Timothy S. Breton ◽  
Maggie S. Hill ◽  
Marcy S. Anderson ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Putative Protein ◽  
Protein Coding Genes

ABSTRACT Four subcluster L2 mycobacteriophages, Finemlucis, Miley16, Wilder, and Zakai, that infect Mycobacterium smegmatis mc2155 were isolated. The four phages are closely related to each other and code for 12 to 14 tRNAs and 130 to 132 putative protein-coding genes, including tyrosine integrases, cro, immunity repressors, and excise genes involved in the establishment of lysogeny.

scholarly journals Draft Genome Sequences of Three Filamentous Cyanobacterial Strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949

2019 ◽  
Vol 8 (43) ◽  
Author(s):  
Shigekatsu Suzuki ◽  
Haruyo Yamaguchi ◽  
Masanobu Kawachi
Keyword(s):  
Draft Genome ◽  
Genome Sequences ◽  
Planktothrix Agardhii ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

Three freshwater planktonic filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949, were sequenced. The genome sizes of NIES-80, NIES-905, and NIES-1949 were 4,571,002 bp, 5,512,454 bp, and 6,025,023 bp, and the number of protein-coding genes in each genome was 4,009, 4,925, and 5,408, respectively.

scholarly journals Complete Genome Sequence of Streptomyces Siphophage Sycamore

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Xing-Han Zhang ◽  
Alejandra Marquez ◽  
James Clark ◽  
Isla Hernandez ◽  
Madeline Rivera ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Phage Genome ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Streptomyces sp. strain Mg1 is a competitive soil-dwelling bacterium that secretes antibiotics that inhibit growth of Bacillus subtilis. Here, we present the genome sequence of Sycamore, a 44,694-bp Streptomyces sp. Mg1 siphophage with 66 predicted protein-coding genes, that is similar to phage genome sequences in the Lomovskayavirus genus.

scholarly journals Genome Sequences of the Mycobacteriophages Awesomesauce and LastJedi

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Madison E. Davis ◽  
Véronique A. Delesalle ◽  
Kayla D. Blankenship ◽  
Jeffrey T. Good ◽  
Clayr M. Kroenke ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Mycobacterium Smegmatis ◽  
Sequence Comparison ◽  
Whole Genome ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Nucleotide Sequence Comparison ◽  
Protein Coding Genes

ABSTRACT Bacteriophages Awesomesauce and LastJedi infect Mycobacterium smegmatis mc2155. While the Awesomesauce genome is 57,054 bp with 94 protein-coding genes, the LastJedi genome is 55,149 bp with 94 protein-coding genes. Nucleotide sequence comparison in Phamerator detected synteny between Awesomesauce gp49 to gp61 and singleton LilSpotty. Whole-genome BLASTn alignments revealed that LastJedi strongly resembles Clifton (99.41% identity).

scholarly journals Draft Genome Sequences of Four Parasaccharibacter apium Strains Isolated from Honey Bees

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Vanessa Corby-Harris ◽  
Kirk E. Anderson
Keyword(s):  
Honey Bee ◽  
Honey Bees ◽  
Draft Genome ◽  
Ecological Strategies ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Parasaccharibacter apium displays multiple ecological strategies in its honey bee host. We sequenced the genomes of four strains found in larvae and the adult gut in order to better understand its ecology and relationship to other Acetobacteraceae . The P. apium genome consists of 2,009,892 bp and 1,830 protein-coding genes.

scholarly journals Genomic Characterization and Annotation of Two Novel Bacteriophages Isolated from a Wastewater Treatment Plant in Qatar

2022 ◽  
Author(s):  
Ramya Ramadoss ◽  
Fajer Al-Marzooqi ◽  
Basem Shomar ◽  
Valentin Alekseevich Ilyin ◽  
Annette Shoba Vincent
Keyword(s):  
Wastewater Treatment ◽  
Wastewater Treatment Plant ◽  
Treatment Plant ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Genomic Characterization

We report the genome sequences of Escherichia phage C600M2 (length, 88,162 bp; G+C content, 38.98%) and Escherichia phage CL1 (length, 87,820 bp; G+C content, 41.32%), which were isolated from a wastewater treatment plant in Qatar. Both Escherichia phage C600M2 and Escherichia phage CL1 genomes contain 128 protein-coding genes and 26 tRNAs.

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