scholarly journals Complete Genome Sequence of a Burkholderia mallei Isolate Originating from a Glanderous Horse from the Kingdom of Bahrain

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Mandy C. Elschner ◽  
Prasad Thomas ◽  
Falk Melzer
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Animal Health ◽  
Burkholderia Mallei ◽  
Notifiable Disease ◽  
The Past ◽  
The World ◽  
World Organization

Burkholderia mallei is a zoonotic agent causing glanders, a notifiable disease in equines. During the past decades glanders emerged, and the Kingdom of Bahrain reported outbreaks to the World Organization of Animal Health in 2010 and 2011. This paper presents the complete genome sequence of the Burkholderia mallei strain 11RR2811 Bahrain1.

scholarly journals Complete Genome and Plasmid Sequences forRhodococcus fasciansD188 and Draft Sequences forRhodococcusIsolates PBTS 1 and PBTS 2

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Rio A. Stamler ◽  
Danny Vereecke ◽  
Yucheng Zhang ◽  
Faye Schilkey ◽  
Nico Devitt ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Plant Development ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Disease Outbreak ◽  
Plant Production ◽  
Rhodococcus Fascians ◽  
The World

Rhodococcus fascians, a phytopathogen that alters plant development, inflicts significant losses in plant production around the world. We report here the complete genome sequence ofR. fasciansD188, a well-characterized model isolate, andRhodococcusspecies PBTS (pistachio bushy top syndrome) 1 and 2, which were shown to be responsible for a disease outbreak in pistachios.

scholarly journals First Complete Genome Sequence of Cucurbit Aphid-Borne Yellows Virus from Pumpkin in the United States

2019 ◽  
Vol 8 (6) ◽  
Author(s):  
Vivek Khanal ◽  
Akhtar Ali
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Growing Season ◽  
The United States ◽  
The World

Cucurbit aphid-borne yellows virus (CABYV) was first described in France in 1992 and since then has been reported in various parts of the world, including the United States. Here, we present the first complete genome sequence of a CABYV isolate (BL4) that was collected from pumpkin during the 2017 growing season in Oklahoma.

scholarly journals Complete Genome Sequence of a Tomato Brown Rugose Fruit Virus Isolated in the United States

2020 ◽  
Vol 9 (29) ◽  
Author(s):  
Bidisha Chanda ◽  
Yazmín Rivera ◽  
Schyler O. Nunziata ◽  
Marco E. Galvez ◽  
Andrea Gilliard ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Evolutionary History ◽  
The United States ◽  
Sequence Identity ◽  
Tight Cluster ◽  
The World ◽  
The U.S

ABSTRACT The complete genome sequence of a U.S. isolate of a Tomato brown rugose fruit virus (ToBRFV) (CA18-01) was obtained through Illumina and MinION sequencing. The U.S. ToBRFV isolate shared a high nucleic acid sequence identity (>99%) with known ToBRFV isolates. Phylogenetic analysis revealed a tight cluster for ToBRFV isolates throughout the world, suggesting a short evolutionary history.

scholarly journals Complete Genome Sequence of a Novel H9N2 Subtype Influenza Virus FJG9 Strain in China Reveals a Natural Reassortant Event

2012 ◽  
Vol 86 (18) ◽  
pp. 10240-10241 ◽  
Author(s):  
Qingmei Xie ◽  
Zhuanqiang Yan ◽  
Jun Ji ◽  
Huanmin Zhang ◽  
Jun Liu ◽  
...  
Keyword(s):  
Influenza Virus ◽  
Avian Influenza ◽  
Avian Influenza Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
High Morbidity ◽  
Fujian Province ◽  
H9n2 Subtype ◽  
The World

A/chicken/FJ/G9/09 (FJ/G9) is an H9N2 subtype avian influenza virus (H9N2 AIV) strain causing high morbidity that was isolated from broilers in Fujian Province of China in 2009. FJ/G9 has been used as the vaccine strain against H9N2 AIV infection in Fujian Province of China. Here, we report the complete genome sequence of FJ/G9 with natural six-way reassortment, which is the most complex genotype strain in China and even in the world so far. The present findings will aid in understanding the complexity and diversity of H9N2 subtype avian influenza virus.

scholarly journals Complete Genome Sequence of Thermus thermophilus Strain HB5018, Isolated from Mine Hot Spring in Japan

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Toshiyuki Moriya ◽  
Naoki Nemoto ◽  
Tairo Oshima ◽  
Kei Yura ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Hot Spring ◽  
Thermus Thermophilus ◽  
Species Conservation ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
The Past

ABSTRACT We isolated Thermus thermophilus strain HB5018 from Mine Hot Spring in Japan, where the type strain HB8 was isolated nearly half a century ago. The complete genome sequence of HB5018 showed 99.1% average nucleotide identity with HB8, suggesting strict species conservation in the habitat over the past 50 years.

scholarly journals Complete Genome Sequence of Serogroup B Neisseria meningitidis Strain C311

2021 ◽  
Vol 10 (42) ◽  
Author(s):  
Freda E.-C. Jen ◽  
John M. Atack ◽  
Yuan Zhang ◽  
Jennifer L. Edwards ◽  
Michael P. Jennings
Keyword(s):  
Neisseria Meningitidis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Content Type ◽  
The Past

Neisseria meningitidis strain C311 has been widely used to study meningococcal pathogenesis in the past 30 years, but its genome is not available. Here, we report that the complete C311 genome is 2,311,508 bp in length, contains a total of 2,274 genes, and has a GC content of 51.25%.

scholarly journals Near-Complete Genome Sequence of a Swine Norovirus GII.11 Strain Detected in Japan in 2018

2020 ◽  
Vol 9 (17) ◽  
Author(s):  
Ayaka Okada ◽  
Yasuo Inoshima
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genome Sequences ◽  
The Past ◽  
Norovirus Gii

Here, we report the near-complete genome sequence of swine norovirus strain SwNoV/Sw1/2018/JP. The genome was genetically similar (90.2%) to that of the only other swine norovirus strain previously detected in Japan (SW/NV/swine43/JP). In conclusion, genome sequences of swine noroviruses in Japan have not been changed significantly in the past 15 years.

scholarly journals Complete genome sequence of a Passion fruit yellow mosaic virus (PFYMV) isolate infecting purple passionfruit (Passiflora edulis f. edulis)

2019 ◽  
Vol 72 (1) ◽  
pp. 8643-8654 ◽  
Author(s):  
Helena Jaramillo Mesa ◽  
Mauricio Alejandro Marín Montoya ◽  
Pablo Gutiérrez Sánchez
Keyword(s):  
Mosaic Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Plant Diseases ◽  
Passion Fruit ◽  
Yellow Mosaic Virus ◽  
Close Relative ◽  
Passiflora Edulis ◽  
The World

Purple passion fruit (Passiflora edulis f. edulis), also known as gulupa, is a vine plant of the familiy Passifloraceae, which in recent years has gained importance in the world fruit market due to its exotic nature and excellent organoleptic properties. Although the demand for gulupa in Colombia has increased significantly to become one of the most important fruit exports, the cultivated area has been in decline since 2009 due to the impact of plant diseases. Cucumber mosaic virus (CMV), soybean mosaic virus (SMV) and cowpea aphid borne mosaic virus (CABMV) are amongst the main viruses found infecting gulupa in Colombia. To further characterize the virome of gulupa, a deep sequencing transcriptome study was performed from a producing region in eastern Antioquia. Based on the results of next-generation sequencing (NGS), we report the genome sequence of a tymovirus infecting this plant. Phylogenetic analysis revealed this virus to be a close relative of Passion fruit yellow mosaic virus (PFYMV), Cassia yellow mosaic-associated virus (CYMaV) and Calopogonium yellow vein virus (CYVV). To date, only a 1115 nt segment comprising the RdRP-CP region of PFYMV has been reported; this sequence shares 84.79% and 95.24% identities at the nucleotide and amino acid levels with the purple passionfruit tymovirus suggesting that the detected virus is a PFYMV isolate (PFYMV_Antioquia). Finally, RT-qPCR and Sanger sequencing using specific primers confirmed the presence of PFYMV in different purple passionfruit crops in Antioquia. This is the first complete genome sequence of a PFYMV isolate reported in the world.

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