scholarly journals Complete Genome Sequence of Potential Probiotic Lactobacillus sp. HFC8, Isolated from Human Gut Using PacBio SMRT Sequencing

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Madhu Kumari ◽  
Mohit Kumar Swarnkar ◽  
Sanjay Kumar ◽  
Anil Kumar Singh ◽  
Mahesh Gupta
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacteriocin Production ◽  
Smrt Sequencing ◽  
Human Gut ◽  
Gene Coding ◽  
Probiotic Lactobacillus ◽  
Pacbio Smrt Sequencing ◽  
Production Cell

We report a 3.07-Mb complete genome sequence of a lactic acid bacterium, Lactobacillus sp. HFC8. The gene-coding clusters are predicated for probiotic characteristics, like bacteriocin production, cell adhesion, bile salt hydrolysis, lactose metabolism, autoaggregation, and tolerance to oxidative stress.

scholarly journals Complete Genome Sequence of the Probiotic Lactobacillus plantarum ST-III

2010 ◽  
Vol 193 (1) ◽  
pp. 313-314 ◽  
Author(s):  
Y. Wang ◽  
C. Chen ◽  
L. Ai ◽  
F. Zhou ◽  
Z. Zhou ◽  
...  
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Probiotic Lactobacillus

scholarly journals Complete Genome Sequence of the Rhizobacterium Pseudomonas trivialis Strain IHBB745 with Multiple Plant Growth-Promoting Activities and Tolerance to Desiccation and Alkalinity

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Arvind Gulati ◽  
Mohit Kumar Swarnkar ◽  
Pratibha Vyas ◽  
Praveen Rahi ◽  
Rishu Thakur ◽  
...  
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Acc Deaminase ◽  
Gene Coding ◽  
Plant Growth Promoting Activities ◽  
Plant Growth Promoting ◽  
Growth Promoting ◽  
Indole 3 Acetic Acid

The complete genome sequence of 6.45 Mb is reported here for Pseudomonas trivialis strain IHBB745 (MTCC 5336), which is an efficient, stress-tolerant, and broad-spectrum plant growth-promoting rhizobacterium. The gene-coding clusters predicted the genes for phosphate solubilization, siderophore production, 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity, indole-3-acetic acid (IAA) production, and stress response.

scholarly journals Complete Genome Sequence and Methylome Analysis ofBacillus globigiiATCC 49760

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Richard D. Morgan
Keyword(s):  
Bacillus Subtilis ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Restriction Enzymes ◽  
Complete Sequence ◽  
Smrt Sequencing ◽  
Methylome Analysis

Bacillus subtilis(Ehrenburg) Cohn ATCC 49760, deposited asBacillus globigii, is the source strain for the restriction enzymes BglI and BglII. Its complete sequence and full methylome were determined using single-molecule real-time (SMRT) sequencing.

scholarly journals Complete Genome Sequence of Acidithiobacillus ferridurans JAGS, Isolated from Acidic Mine Drainage

2020 ◽  
Vol 9 (13) ◽  
Author(s):  
Jinjin Chen ◽  
Yilan Liu ◽  
Patrick Diep ◽  
Andrew Jo ◽  
Camilla Nesbø ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mine Drainage ◽  
Gc Content ◽  
Acidic Mine Drainage ◽  
Smrt Sequencing ◽  
Protein Coding ◽  
Content Type

We report a complete genome sequence of Acidithiobacillus ferridurans JAGS, determined using PacBio single-molecule real-time (SMRT) sequencing. The circular genome of JAGS (2,933,811 bp; GC content, 58.57%) contains 3,001 protein-coding sequences, 46 tRNAs, and 6 rRNAs. Predicted genes indicate the potential to fix CO2 and N2 and to utilize Fe2+, S0, and H2 as energy sources.

scholarly journals Complete Genome Sequence of Bartonella alsatica Strain IBS 382 (CIP 105477)

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Arno Thibau ◽  
Tilman G. Schultze ◽  
Wibke Ballhorn ◽  
Volkhard A. J. Kempf
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Zoonotic Potential ◽  
Smrt Sequencing ◽  
Content Type ◽  
Long Read ◽  
Human Infections ◽  
Future Work

ABSTRACT Bartonella alsatica causes bacteremia in rabbits and, rarely, human infections. Here, we announce the complete and closed genome of B. alsatica IBS 382 (CIP 105477), generated by long-read Pacific Biosciences single-molecule real-time (SMRT) sequencing. The availability of this genome sequence allows future work on understanding the zoonotic potential of this pathogen.

scholarly journals Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Yusuke Ogata ◽  
Mitsuo Sakamoto ◽  
Moriya Ohkuma ◽  
Masahira Hattori ◽  
Wataru Suda
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Gut ◽  
Content Type ◽  
Akkermansia Muciniphila ◽  
Degrading Bacterium ◽  
Japanese Male

Akkermansia muciniphila is an anaerobic and mucin-degrading bacterium in the human gut. Here, we report the complete genome sequence of Akkermansia muciniphila JCM 30893 harboring the plasmid pJ30893.

scholarly journals Complete Genome Sequence of the Probiotic Lactobacillus rhamnosus ATCC 53103

2009 ◽  
Vol 191 (24) ◽  
pp. 7630-7631 ◽  
Author(s):  
Hidetoshi Morita ◽  
Hidehiro Toh ◽  
Kenshiro Oshima ◽  
Masaru Murakami ◽  
Todd D. Taylor ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Intestinal Flora ◽  
Lactobacillus Rhamnosus ◽  
Healthy Individuals ◽  
Gastrointestinal Mucosa ◽  
Healthy Human ◽  
Probiotic Lactobacillus

ABSTRACT Lactobacillus rhamnosus is a facultatively heterofermentative lactic acid bacterium and is frequently isolated from human gastrointestinal mucosa of healthy individuals. L. rhamnosus ATCC 53103, isolated from a healthy human intestinal flora, is one of the most widely used and well-documented probiotics. Here, we report the finished and annotated genome sequence of this organism.

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