scholarly journals The promoter for a sporulation gene in the spoIVC locus of Bacillus subtilis and its use in studies of temporal and spatial control of gene expression.

1988 ◽  
Vol 170 (8) ◽  
pp. 3513-3522 ◽  
Author(s):  
B Kunkel ◽  
K Sandman ◽  
S Panzer ◽  
P Youngman ◽  
R Losick
2019 ◽  
Author(s):  
Shuo-Ting Yen ◽  
Kenneth A. Trimmer ◽  
Nader Aboul ◽  
Rachel D. Mullen ◽  
James C. Culver ◽  
...  

ABSTRACTPrecise manipulation of gene expression with temporal and spatial control is essential for functional studies and the determination of cell lineage relationships in complex biological systems. The Cre-loxP system is commonly used for gene manipulation at desired times and places. However, specificity is dependent on the availability of tissue- or cell-specific regulatory elements used in combination with Cre or CreER (tamoxifen-inducible). Here we present CreLite, an optogenetically-controlled Cre system using red light in developing zebrafish embryos. Cre activity is disabled by splitting Cre and fusing the inactive halves with the Arabidopsis thaliana red light-inducible binding partners, PhyB and PIF6. In addition, PhyB-PIF6 binding requires phycocyanobilin (PCB), providing an additional layer of control. Upon exposure to red light (660 nm) illumination, the PhyB-CreC and PIF6-CreN fusion proteins come together in the presence of PCB to restore Cre activity. Red-light exposure of transgenic zebrafish embryos harboring a Cre-dependent multi-color fluorescent protein reporter (ubi:zebrabow) injected with CreLite mRNAs and PCB, resulted in Cre activity as measured by the generation of multi-spectral cell labeling in various tissues, including heart, skeletal muscle and epithelium. We show that CreLite can be used for gene manipulations in whole embryos or small groups of cells at different stages of development. CreLite provides a novel optogenetic tool for precise temporal and spatial control of gene expression in zebrafish embryos that may also be useful in cell culture, ex vivo organ culture, and other animal models for developmental biology studies.


2014 ◽  
Vol 1 (1) ◽  
Author(s):  
Manjul Dutt ◽  
Sadanand A Dhekney ◽  
Leonardo Soriano ◽  
Raju Kandel ◽  
Jude W Grosser

2008 ◽  
Vol 18 (2) ◽  
pp. 163-172 ◽  
Author(s):  
Martin Montecino ◽  
Gary Stein ◽  
Janet L. Stein ◽  
Jane B. Lian ◽  
Andre J. van Wijnen ◽  
...  

2020 ◽  
Vol 61 ◽  
pp. 326-334 ◽  
Author(s):  
Graciely Gomes Corrêa ◽  
Milca Rachel da Costa Ribeiro Lins ◽  
Bruna Fernandes Silva ◽  
Gabriela Barbosa de Paiva ◽  
Vitoria Fernanda Bertolazzi Zocca ◽  
...  

2012 ◽  
Vol 23 (5) ◽  
pp. 679-688 ◽  
Author(s):  
Andrew L Chang ◽  
Joshua J Wolf ◽  
Christina D Smolke

Endocrinology ◽  
1998 ◽  
Vol 139 (3) ◽  
pp. 1361-1368 ◽  
Author(s):  
N. Takasuka ◽  
M. R. H. White ◽  
C. D. Wood ◽  
W. R. Robertson ◽  
J. R. E. Davis

The firefly luciferase gene has become widely used as a convenient reporter for studies of gene promoter regulation. Very recently, the development of ultralow-light imaging cameras has enabled the quantitative digital imaging of light signals resulting from luciferase activation in the presence of luciferin substrate. We have applied this technology to the study of PRL promoter activation in individual pituitary tumor cells to study the temporal and spatial characteristics of the expression of a well-characterized pituitary hormone gene. Rat pituitary GH3 cells were transfected by lipofection with a luciferase reporter gene linked to 5000 bp from the human PRL gene 5′-flanking region. A series of stably transfected cell clones were generated, and one of these was chosen for detailed study on the basis of appropriate regulation of high-level luciferase expression by a series of known stimuli including TRH, forskolin, the calcium channel agonist Bay K8644, and basic fibroblast growth factor (bFGF). These cells were subjected to direct imaging of luciferase activity using a Hamamatsu photon-counting camera linked to a Zeiss Axiovert microscope with an Argus-50 image processor. Cells were exposed to 1 mm luciferin, and images were integrated over 30-min periods for up to 72 h. The total photon count over a given field settled to steady levels within 10 h and then remained constant for over 55 h. Addition of forskolin, TRH, or bFGF increased the total photon count of fields of 20–100 cells by 2- to 4-fold consistent with previous data from transient expression assays using the human PRL promoter. Individual cells, on the other hand, showed marked marked temporal and spatial heterogeneity and variability of luciferase expression when studied at 3-h intervals. Unstimulated cells showed variable luciferase expression with up to 40-fold excursions in photon counts per single cell area within 12-h periods. Stimulation of cells with either TRH, forskolin, or bFGF resulted in smooth increases in photon output over fields of 20–100 cells, but again individual cell responses differed widely, with some cells showing slow progressive rises in photon output, others showing phasic or transient responses, and yet others showing no response. In conclusion, we found a surprising degree of heterogeneity and temporal variability in the level of gene expression in individual living pituitary tumor cells over long periods of time, with markedly divergent responses to hormonal or intracellular stimulation. The use of stably transfected clonal cell lines with extended periods of reporter gene imaging offers a valuable insight into control of gene expression in living cells in real time.


2017 ◽  
Vol 176 (2) ◽  
pp. 1694-1708 ◽  
Author(s):  
Edgardo G. Bresso ◽  
Uciel Chorostecki ◽  
Ramiro E. Rodriguez ◽  
Javier F. Palatnik ◽  
Carla Schommer

Biomaterials ◽  
2011 ◽  
Vol 32 (11) ◽  
pp. 3062-3071 ◽  
Author(s):  
Priya R. Baraniak ◽  
Devin M. Nelson ◽  
Cory E. Leeson ◽  
Anand K. Katakam ◽  
Jennifer L. Friz ◽  
...  

Microbiology ◽  
2005 ◽  
Vol 151 (2) ◽  
pp. 399-420 ◽  
Author(s):  
Leif Steil ◽  
Mónica Serrano ◽  
Adriano O. Henriques ◽  
Uwe Völker

Temporal and compartment-specific control of gene expression during sporulation in Bacillus subtilis is governed by a cascade of four RNA polymerase subunits. σ F in the prespore and σ E in the mother cell control early stages of development, and are replaced at later stages by σ G and σ K, respectively. Ultimately, a comprehensive description of the molecular mechanisms underlying spore morphogenesis requires the knowledge of all the intervening genes and their assignment to specific regulons. Here, in an extension of earlier work, DNA macroarrays have been used, and members of the four compartment-specific sporulation regulons have been identified. Genes were identified and grouped based on: i) their temporal expression profile and ii) the use of mutants for each of the four sigma factors and a bofA allele, which allows σ K activation in the absence of σ G. As a further test, artificial production of active alleles of the sigma factors in non-sporulating cells was employed. A total of 439 genes were found, including previously characterized genes whose transcription is induced during sporulation: 55 in the σ F regulon, 154 σ E-governed genes, 113 σ G-dependent genes, and 132 genes under σ K control. The results strengthen the view that the activities of σ F, σ E, σ G and σ K are largely compartmentalized, both temporally as well as spatially, and that the major vegetative sigma factor (σ A) is active throughout sporulation. The results provide a dynamic picture of the changes in the overall pattern of gene expression in the two compartments of the sporulating cell, and offer insight into the roles of the prespore and the mother cell at different times of spore morphogenesis.


2019 ◽  
Author(s):  
Konstadinos Moissoglu ◽  
Kyota Yasuda ◽  
Tianhong Wang ◽  
George Chrisafis ◽  
Stavroula Mili

ABSTRACTLocalization of RNAs to various subcellular destinations is a widely used mechanism that regulates a large proportion of transcripts in polarized cells. In many cases, such localized transcripts mediate spatial control of gene expression by being translationally silent while in transit and locally activated at their destination. Here, we investigate the translation of RNAs localized at dynamic cellular protrusions of human and mouse, migrating, mesenchymal cells. In contrast to the model described above, we find that protrusion-localized RNAs are not locally activated solely at protrusions, but can be translated with similar efficiency in both internal and peripheral locations. Interestingly, protrusion-localized RNAs are translated at extending protrusions, they become translationally silenced in retracting protrusions and this silencing is accompanied by coalescence of single RNAs into larger heterogeneous RNA clusters. This work describes a distinct mode of translational regulation of localized RNAs, which we propose is used to regulate protein activities during dynamic cellular responses.


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