scholarly journals Structural Comparison of Ten Serotypes of Staphylocoagulases in Staphylococcus aureus

2005 ◽  
Vol 187 (11) ◽  
pp. 3698-3707 ◽  
Author(s):  
S. Watanabe ◽  
T. Ito ◽  
F. Takeuchi ◽  
M. Endo ◽  
E. Okuno ◽  
...  
Keyword(s):  
Amino Acids ◽  
Staphylococcus Aureus ◽  
Tandem Repeats ◽  
Signal Sequence ◽  
Housekeeping Genes ◽  
Terminal Sequence ◽  
Phylogenetic Relations ◽  
Central Regions ◽  
Terminal Amino ◽  
Flanking Regions

ABSTRACT Staphylocoagulase detection is the hallmark of a Staphylococcus aureus infection. Ten different serotypes of staphylocoagulases have been reported to date. We determined the nucleotide sequences of seven staphylocoagulase genes (coa) and their surrounding regions to compare structures of all 10 staphylocoagulase serotypes, and we inferred their derivations. We found that all staphylocoagulases are comprised of six regions: signal sequence, D1 region, D2 region, central region, repeat region, and C-terminal sequence. Amino acids at both ends, 33 amino acids in the N terminal (the signal sequences and the seven N-terminal amino acids in the D1 region) and 5 amino acids in the C terminal, were exactly identical among the 10 serotypes. The central regions were conserved with identities between 80.6 and 94.1% and similarities between 82.8 and 94.6%. Repeat regions comprising tandem repeats of 27 amino acids with a 92% identity on average were polymorphic in the number of repeats. On the other hand, D1 regions other than the seven N-terminal amino acids and D2 regions were less homologous, with diverged identities from 41.5 to 84.5% and 47.0 to 88.9%, respectively, and similarities from 53.5 to 88.7% and 56.8 to 91.9%, respectively, although the predicted prothrombin-binding sites were conserved among them. In contrast, flanking regions of coa were highly homologous, with nucleotide identities of more than 97.1%. Phylogenetic relations among coa did not correlate with those among the flanking regions or housekeeping genes used for multilocus sequence typing. These data indicate that coa could be transmitted to S. aureus, while the less homologous regions in coa presumed to be responsible for different antigenicities might have evolved independently.

scholarly journals Characterization of human torsinA and its dystonia-associated mutant form

2003 ◽  
Vol 374 (1) ◽  
pp. 117-122 ◽  
Author(s):  
Zhonghua LIU ◽  
Anna ZOLKIEWSKA ◽  
Michal ZOLKIEWSKI
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Signal Sequence ◽  
Eukaryotic Cells ◽  
Membrane Association ◽  
S2 Cells ◽  
Wild Type ◽  
Hydrophobic Region ◽  
Terminal Amino ◽  
Membrane Anchoring

Deletion of a single glutamate in torsinA correlates with early-onset dystonia, the most severe form of a neurological disorder characterized by uncontrollable muscle contractions. TorsinA is targeted to the ER (endoplasmic reticulum) in eukaryotic cells. We investigated the processing and membrane association of torsinA and the dystonia-associated Glu-deletion mutant (torsinAΔE). We found that the signal sequence of torsinA (residues 1–20 from the 40 amino-acid long N-terminal hydrophobic region) is cleaved in Drosophila S2 cells, as shown by the N-terminal sequencing after partial protein purification. TorsinA is not secreted from S2 cells. Consistently, sodium carbonate extraction and Triton X-114 treatment showed that torsinA is associated with the ER membrane in CHO (Chinese-hamster ovary) cells. In contrast, a variant of torsinA that contains the native signal sequence without the hydrophobic region Ile24–Pro40 does not associate with the membranes in CHO cells, and a truncated torsinA without the 40 N-terminal amino acids is secreted in the S2 culture. Thus the 20-amino-acid-long hydrophobic segment in torsinA, which remains at the N-terminus after signal-peptide cleavage, is responsible for the membrane anchoring of torsinA. TorsinAΔE showed similar cleavage of the 20 N-terminal amino acids and membrane association properties similar to wild-type torsinA but, unlike the wild-type, torsinAΔE was not secreted in the S2 culture even after deletion of the membrane-anchoring segment. This indicates that the dystonia-associated mutation produces a structurally distinct, possibly misfolded, form of torsinA, which cannot be properly processed in the secretory pathway of eukaryotic cells.

NUCLEOTIDE SEQUENCE OF THE STAPHYLOCOAGULASE GENE FROM STAPHYLOCOCCUS AUREUS STRAIN BB

1987 ◽  
Author(s):  
S Kaida ◽  
T Miyata ◽  
S Kawabata ◽  
T Morita ◽  
Y Yoshizawa ◽  
...  
Keyword(s):  
Amino Acids ◽  
Staphylococcus Aureus ◽  
Amino Acid ◽  
Tandem Repeats ◽  
Molar Ratio ◽  
Clotting Factor ◽  
Aureus Strain ◽  
Activation Process ◽  
Coding Region ◽  
Flanking Region

Staphylocoagulase (SC) is a secretary protein produced by several strains of Staphylococcus aureus (S. aureus). This protein forms a molecular complex ("staphylothrombin") with human prothrombin in a molar ratio of 1:1. The complex displays the ability to clot fibrinogen and to hydrolyze the synthetic tripeptide substrates for α-thrombin. The formation of staphylothrombin does not require proteolytic cleavage of the prothrombin molecule, and this mechanism differs markedly from the activation process by either blood-clotting factor Xa or snake venom procoagulant.In the present studies, a pAT153 library containing partial Mbo I-digested DNA prepared from aureus strain BB has been screened with a fibrin gel formation method. The identity of these clones with SC was confirmed by DNA sequence analysis and by comparison of the derived amino acid sequence with that determined for the purified SC protein. One of the positive colonies was isolated and 3.1 Kb of the insert DNA was determined by the dideoxy chain termination method. The results indicated that the insert DNA consists of 148 bp 5' flanking region, protein coding region of 715 amino acids and 746 bp 3' flanking region, and that SC from strain BB is synthesized as a precursor with a signal peptide of 26 amino acids. Thus, the mature form was composed of 689 amino acids with a molecular weight of 77,337- The NH2-terminal sequence (324 amino acids) of SC isolated from S. aureus strain 213 (S. Kawabata et al. (1986): J. Biol. Chem. 261, 527-531) was compared with that of SC derived from strain BB. The sequence homology between them was found to show 57 %. It was also found that SC derived from strain BB was composed of 8 tandem repeats (27 amino acid residues in length) in the COOH-terminal region, although their functions are not known.

scholarly journals Accurate processing and secretion in the baculovirus expression system of an erythroid-cell-stimulating factor consisting of a chimaera of insulin-like growth factor II and an insect insulin-like peptide

1994 ◽  
Vol 299 (1) ◽  
pp. 101-107 ◽  
Author(s):  
L F Congote ◽  
Q Li
Keyword(s):  
Amino Acids ◽  
Growth Factor ◽  
Insect Cells ◽  
Expression System ◽  
Recombinant Baculovirus ◽  
Erythroid Cell ◽  
Insulin Like Growth Factor ◽  
Terminal Sequence ◽  
Factor Ii ◽  
Terminal Amino

A synthetic gene encoding the signal peptide and the N-terminal sequence of bombyxin, an insect insulin-like peptide, and the 58 amino acids of the C-terminal sequence of human insulin-like growth factor II (IGF II) has been expressed using the baculovirus system. This synthetic chimaera was obtained by amplification of four overlapping oligonucleotides using Taq polymerase and cloning into the transfer vector pBluebac. The construct was integrated by homologous recombination into the Autographa californica nuclear polyhedrosis genome. Spodoptera frugiperda Sf9 insect cells infected with the recombinant baculovirus secreted an accurately processed peptide consisting of the ten N-terminal amino acids of bombyxin and the 58 C-terminal amino acids of IGF II. The N-terminal glutamine of bombyxin was changed to asparagine to facilitate sequencing of the synthetic peptide. The chimaera was five times more potent than human recombinant IGF II in its capacity to stimulate thymidine incorporation into erythroid cells of fetal bovine liver in a serum-free medium. It stimulated erythroid colony formation in the presence of 2 microunits/ml erythropoietin in cells cultured over a monolayer of stromal cells of fetal liver. Artificial chimaeras as described here may prove useful for the production of insulin, IGF I and other peptides as secreted proteins in insect cells.

scholarly journals Impact of C-terminal amino acid composition on protein expression in bacteria

2019 ◽  
Author(s):  
Marc Weber ◽  
Raul Burgos ◽  
Eva Yus ◽  
Jae-Seong Yang ◽  
Maria Lluch-Senar ◽  
...  
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Protein Expression ◽  
Translation Termination ◽  
Terminal Sequence ◽  
Bacterial Taxonomy ◽  
Terminal Amino Acid ◽  
Protein Levels ◽  
Terminal Amino ◽  
The Impact

AbstractThe C-terminal sequence of a protein is involved in processes such as efficiency of translation termination and protein degradation. However, the general relationship between features of this C-terminal sequence and levels of protein expression remains unknown. Here, we identified C-terminal amino acid biases that are ubiquitous across the bacterial taxonomy (1582 genomes). We showed that the frequency is higher for positively charged amino acids (lysine, arginine) while hydrophobic amino acids and threonine are lower. In highly abundant proteins, the C-terminal residue is more conserved. We then studied the impact of C-terminal composition on protein levels in a library of M. pneumoniae mutants, covering all possible combinations of the two last codons. We found that charged and polar residues, in particular lysine, led to higher expression, while hydrophobic and aromatic residues led to lower expression, with a difference in protein levels up to 4-fold. Our results demonstrate that the identity of the last amino acids has a strong influence on protein expression levels and is under selective pressure in highly expressed proteins.

scholarly journals Staphylococcus aureus causing osteomyelitis binds to a nonapeptide sequence in bone sialoprotein

1997 ◽  
Vol 327 (3) ◽  
pp. 825-829 ◽  
Author(s):  
Cecilia RYDÉN ◽  
Hui-Shan TUNG ◽  
Victor NIKOLAEV ◽  
Åke ENGSTRÖM ◽  
Åke OLDBERG
Keyword(s):  
Amino Acids ◽  
Staphylococcus Aureus ◽  
Extracellular Matrix ◽  
Synthetic Peptides ◽  
Core Protein ◽  
Bone Sialoprotein ◽  
Amino Acid Residues ◽  
Terminal Part ◽  
Terminal Amino Acid ◽  
Terminal Amino

Bone sialoprotein is a glycoprotein of the bone and dentine extracellular matrix. This protein consists of 320 amino acids, of which 25% are glutamic and aspartic acid residues. Sialic acid, containing oligosaccharides and tyrosine sulphate residues, supplies additional polyanionic properties. Staphylococcal cells, isolated from patients suffering from infection of bone tissue, bind the bone-derived sialoprotein, an interaction which is specifically inhibited by the recombinant bone sialoprotein core protein. We have previously shown that the 150 N-terminal amino acid residues of bone sialoprotein are responsible for the binding to staphylococcal cells. By using recombinant deleted variants of bone sialoprotein and synthetic peptides, we have now localized the staphylococcal binding site to less than 10 residues within the N-terminal part of the protein.

Purification of the delta toxin of Staphylococcus aureus

1970 ◽  
Vol 16 (8) ◽  
pp. 703-708 ◽  
Author(s):  
J. D. Caird ◽  
G. M. Wiseman
Keyword(s):  
Amino Acids ◽  
Staphylococcus Aureus ◽  
Amino Acid ◽  
Ammonium Sulphate ◽  
Deae Cellulose ◽  
Aureus Strain ◽  
Terminal Amino Acid ◽  
Terminal Amino ◽  
Two Peaks

An improved procedure for the purification of the delta toxin of Staphylococcus aureus strain E-delta has been devised which relies upon precipitation at pH 4.0 and further treatment with ammonium sulphate. A final step consists of passage twice through a column of DEAE-cellulose. Toxin obtained by this method appeared to be homogeneous on the basis of immunodiffusion and electrophoresis studies. However, two peaks with sedimentation coefficients of 2.8 S and 9.8 S were obtained when toxin was examined in the ultracentrifuge. Proline was identified as the N-terminal amino acid. No other N-terminal amino acids were detected in the purified toxin.

Amino acid sequence of penicillopepsin. IV. Myxobacter AL-1 protease II and Staphylococcus aureus protease fragments and homology with pig pepsin and chymosin

1976 ◽  
Vol 54 (10) ◽  
pp. 902-914 ◽  
Author(s):  
Anne Cunningham ◽  
Hsin-Min Wang ◽  
Stephen R. Jones ◽  
Alexander Kurosky ◽  
Leticia Rao ◽  
...  
Keyword(s):  
Amino Acids ◽  
Staphylococcus Aureus ◽  
Amino Acid ◽  
Amino Acid Sequence ◽  
Sequence Data ◽  
Amino Acid Residues ◽  
Terminal Sequence ◽  
Fungal Enzyme ◽  
Fungal Protease ◽  
And Staphylococcus Aureus

The digest of penicillopepsin (EC 3.4.23.7) with protease II from Myxobacter AL-1 gave five fragments which were separated on a Biogel P-100 column in 70% formic acid. The fragments were from 16 to 125 amino acids long. Two fragments were also isolated from a digest with a protease from Staphylococcus aureus. The analysis of these fragments by automatic sequencer gave a number of overlaps of the chymotryptic and thermolytic peptides. The available amino acid sequence data for penicillopepsin described in this paper and the accompanying papers (Kurosky, A. &Hofmann, T.: Can. J. Biochem. 54, 872 (1976); Rao, L. &Hofmann, T.: Can. J. Biochem. 54, 885 (1976); Harris, C. I., Rao, L., Shutsa, P., Kurosky, A. &Hofmann, T.: Can. J. Biochem. 54, 895 (1976)) have been combined and yield 15 fragments which range in lengths from 3 to 112 amino acid residues. These unique fragments account for virtually all the amino acids of the fungal protease. Four of the fragments with a total of 194 residues (about 60% of the molecule) have been aligned with corresponding sections of pig pepsin (EC 3.4.23.1) and with part of the N-terminal sequence available for calf chymosin (EC 3.4.23.4). In the alignments about 37% of the residues in the fungal enzyme are identical with at least one of the mammalian enzymes. An additional 20% are chemically similar. These results, together with previously reported active-site directed modifications, show conclusively that penicillopepsin is an evolutionary homologue of the mammalian acid proteases.

scholarly journals Post-translational Regulation Using Anti-peptide Antibody of 22-Kilodalton Potato Proteinase Inhibitors

HortScience ◽  
1995 ◽  
Vol 30 (4) ◽  
pp. 878A-878
Author(s):  
Sang-Gon Suh ◽  
Yong-Sun Moon ◽  
David J. Hannapel
Keyword(s):  
Amino Acids ◽  
Signal Peptide ◽  
Translational Regulation ◽  
Proteinase Inhibitors ◽  
Signal Sequence ◽  
Cdna Probe ◽  
Amino Terminal ◽  
Synthetic Signal ◽  
Peptide Antibody ◽  
Terminal Amino

The 22-kDa potato proteinase inhibitors (22-kDa PPI) are synthesized as a preprotein with a hydrophobic signal sequence of 40-residue amino acids. The amino-terminal amino acid sequence (10-mer amino acids: 18-Ala-Phe-Ala-Arg-Ser-Phe-Thr-Ser-Glu-Asn-27) of signal peptide of 22-kDa PPI was synthesized. The 22-kDa PPI signal peptide specific anti-peptide antibodies were raised in New Zealand white rabbits against the 22-kDa PPI synthetic signal peptide. Immunoblot and Northern blot analysis were performed by using 22-kDa PPI anti-peptide antibody and cDNA probe, p34021, which codes for the 22-kDa PPI, respectively. In this paper, we determined the process of the 22-kDa potato proteinase inhibitor in tuber and wounded leaves.

C-Terminal amino acid sequence of chicken pepsinogen and its homology with sequences of other acid proteases

1980 ◽  
Vol 45 (4) ◽  
pp. 1144-1154 ◽  
Author(s):  
Miroslav Baudyš ◽  
Helena Keilová ◽  
Vladimír Kostka
Keyword(s):  
Amino Acid ◽  
Amino Acid Sequence ◽  
The Other ◽  
Terminal Sequence ◽  
Terminal Part ◽  
Terminal Amino Acid ◽  
Tryptic Peptides ◽  
Terminal Amino ◽  
High Degree ◽  
Terminal Amino Acid Sequence

To determine the primary structure of the C-terminal part of the molecule of chicken pepsinogen the tryptic, chymotryptic and thermolytic digest of the protein were investigated and peptides derived from this region were sought. These peptides permitted the following 21-residue C-terminal sequence to be determined: ...Ile-Arg-Glu-Tyr-Tyr-Val-Ile-Phe-Asp-Arg-Ala-Asn-Asn-Lys-Val-Gly-Leu-Ser-Pro-Leu-Ser.COOH. A comparison of this structure with the C-terminal sequential regions of the other acid proteases shows a high degree of homology between chicken pepsinogen and these proteases (e.g., the degree of homology with respect to hog pepsinogen and calf prochymosin is about 66%). Additional tryptic peptides, derived from the N-terminal part of the zymogen molecule whose amino acid sequence has been reported before, were also obtained in this study. This sequence was extended by two residues using an overlapping peptide. An ancillary result of this study was the isolation of tryptic peptides derived from other regions of the zymogen molecule.

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