scholarly journals Coding-Complete Genome Sequence of a Partitivirus Isolated from Pine Processionary Moth Eggs

2021 ◽  
Vol 10 (8) ◽  
Author(s):  
Franck Dorkeld ◽  
Réjane Streiff ◽  
Carole Kerdelhué ◽  
Mylène Ogliastro
Keyword(s):  
Coat Protein ◽  
Complete Genome Sequence ◽  
Open Reading Frame ◽  
Thaumetopoea Pityocampa ◽  
Data Sets ◽  
Rna Dependent Rna Polymerase ◽  
Content Type ◽  
Reading Frame ◽  
Pine Processionary Moth ◽  
Transcriptomic Data

ABSTRACT Two coding-complete nucleotide sequences of a partitivirus (family Partitiviridae) were discovered in transcriptomic data sets obtained from eggs of the Lepidoptera Thaumetopoea pityocampa. Each segment encodes a single open reading frame, and these two segments are predicted to encode an RNA-dependent RNA polymerase and a coat protein, respectively.

scholarly journals Coding-Complete Genome Sequences of an Iteradensovirus and an Alphapermutotetra-Like Virus Identified from the Pine Processionary Moth (Thaumetopoea pityocampa) in Portugal

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Franck Dorkeld ◽  
Réjane Streiff ◽  
Carole Kerdelhué ◽  
Mylène Ogliastro
Keyword(s):  
Complete Genome ◽  
Open Reading Frames ◽  
Thaumetopoea Pityocampa ◽  
Data Sets ◽  
Genome Sequences ◽  
Virus Family ◽  
Content Type ◽  
Pine Processionary Moth ◽  
Transcriptomic Data ◽  
Reading Frames

ABSTRACT The coding-complete genome sequences of an iteradensovirus (family Parvoviridae) and an alphapermutotetra-like virus (family Permutotetraviridae) were discovered from transcriptomic data sets obtained from Thaumetopoea pityocampa larvae collected in Portugal. Each of the coding-complete genome sequences of these viruses contains three main open reading frames (ORFs).

scholarly journals Complete Genome Sequence of a Novel Type of Human Parechovirus Strain Reveals Natural Recombination Events

2012 ◽  
Vol 86 (16) ◽  
pp. 8892-8893 ◽  
Author(s):  
Guangming Sun ◽  
Yong Wang ◽  
Gang Tao ◽  
Quan Shen ◽  
Weiping Cao ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Recombination Event ◽  
Open Reading Frame ◽  
Human Parechovirus ◽  
Content Type ◽  
Reading Frame ◽  
Natural Recombination ◽  
Genomic Recombination

Human parechoviruses (HPeVs) are a species in theParechovirusgenus of thePicornaviridaefamily. We report a complete genome sequence of a novel HPeV strain, CH-ZJ1, that was found in an infant with gastroenteritis in Zhenjiang City, China. The complete genome consists of 7,298 nucleotides (nt), excluding the 3′ poly(A) tail; the open reading frame is mapped between nucleotide positions 654 and 7211 and encodes a 2,185-amino acid (aa) polyprotein. The phylogenetic tree obtained for the complete genome of this HPeV strain and the other HpeV strains available in GenBank indicated that CH-ZJ1 is intervenient between HpeV type 4 (HpeV4) and HpeV5. Phylogenetic analysis based on the 3D and VP1 genes reveals two incongruent trees. Recombination detection indicated that CH-ZJ1 might be a recombinant which was produced by more than one genomic recombination event that occurred among HPeV1, HPeV4, and HPeV3 strains.

scholarly journals Transcriptomic Data Sets To Determine Gene Expression Changes Mediated by the Presence of PBT2 in Growth Medium of Multidrug-Resistant Neisseria gonorrhoeae WHO Z

2020 ◽  
Vol 9 (21) ◽  
Author(s):  
Freda E.-C. Jen ◽  
Ibrahim M. El-Deeb ◽  
John M. Atack ◽  
Mark von Itzstein ◽  
Michael P. Jennings
Keyword(s):  
Neisseria Gonorrhoeae ◽  
Transcriptome Sequencing ◽  
Multidrug Resistant ◽  
Data Sets ◽  
Sequencing Data ◽  
Transmitted Infection ◽  
High Coverage ◽  
Content Type ◽  
Sexually Transmitted ◽  
Transcriptomic Data

ABSTRACT Neisseria gonorrhoeae causes the sexually transmitted infection gonorrhea. High-coverage (∼3,300-fold) transcriptome sequencing data have been collected from multidrug-resistant N. gonorrhoeae strain WHO Z grown in the presence and absence of PBT2.

scholarly journals SatR Is a Repressor of Fluoroquinolone Efflux Pump SatAB

2013 ◽  
Vol 57 (7) ◽  
pp. 3430-3433 ◽  
Author(s):  
Jose Antonio Escudero ◽  
Alvaro San Millan ◽  
Natalia Montero ◽  
Belen Gutierrez ◽  
Cristina Martinez Ovejero ◽  
...  
Keyword(s):  
Abc Transporter ◽  
High Mortality ◽  
Human Population ◽  
Efflux Pump ◽  
Streptococcus Suis ◽  
Open Reading Frame ◽  
Fluoroquinolone Resistance ◽  
Content Type ◽  
Reading Frame

ABSTRACTStreptococcus suisis an emerging zoonotic agent responsible for high-mortality outbreaks among the human population in China. In this species, the ABC transporter SatAB mediates fluoroquinolone resistance when overexpressed. Here, we describe and characterizesatR, an open reading frame (ORF) encoding a MarR superfamily regulator that acts as a repressor ofsatAB. satRis cotranscribed withsatAB, and its interruption entails the overexpression of the pump, leading to a clinically relevant increase in resistance to fluoroquinolones.

scholarly journals Complete Genome Sequence of a Novel Human Gammapapillomavirus Isolated from Skin

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Rosario N. Brancaccio ◽  
Alexis Robitaille ◽  
Sankhadeep Dutta ◽  
Dana E. Rollison ◽  
Nicole Fischer ◽  
...  
Keyword(s):  
Human Papillomavirus ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frame ◽  
Next Generation ◽  
Degenerate Pcr ◽  
Reading Frame ◽  
Generation Sequencing

ABSTRACT A novel human papillomavirus (HPV ICB1) was fully characterized from a skin swab by using a sensitive degenerate PCR protocol combined with next-generation sequencing. The L1 open reading frame of HPV ICB1 shares 70.54% nucleotide homology with its closest relative, HPV164, and thus constitutes a novel human gammapapillomavirus.

scholarly journals Complete Genome Sequence of Human Coronavirus NL63 CN0601/14, First Isolated in South Korea

2018 ◽  
Vol 6 (12) ◽  
Author(s):  
Jeong-Min Kim ◽  
Seung-Tae Kim ◽  
Jeong-Sun Yang ◽  
Sung Soon Kim ◽  
Hyang-Min Cheong
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frame ◽  
Genome Sequences ◽  
Human Coronavirus ◽  
Reading Frame

ABSTRACT We report here the complete genome sequence of the human coronavirus NL63 CN0601/14 strain, first isolated from South Korea. It contains 18-nucleotide discontinuous deletions of the open reading frame 1a (ORF1a) and spike regions. This study will aid in our understanding of the complete genome sequences of isolated coronaviruses in South Korea.

scholarly journals Molecular Organization of Small Plasmids BearingblaTEM-1and Conferring Resistance to β-Lactams in Haemophilus influenzae

2012 ◽  
Vol 56 (9) ◽  
pp. 4958-4960 ◽  
Author(s):  
Annette Søndergaard ◽  
Alvaro San Millan ◽  
Alfonso Santos-Lopez ◽  
Signe M. Nielsen ◽  
Bruno Gonzalez-Zorn ◽  
...  
Keyword(s):  
Haemophilus Influenzae ◽  
Open Reading Frame ◽  
Molecular Organization ◽  
Gram Positive ◽  
Content Type ◽  
Reading Frame ◽  
Enzyme Gene ◽  
Gram Positive Bacteria ◽  
Resistant Phenotype ◽  
Plasmid Recombination

ABSTRACTTEM-1 is the dominant β-lactamase ofHaemophilus influenzaeand can be located on small plasmids. Three distinct plasmids with sizes from 4,304 to 5,646 nucleotides (nt) were characterized: pA1606, pA1209, and pPN223. In addition to TEM-1 and a replication enzyme of the Rep 3 superfamily, pA1606 carries a Tn3resolvase gene and pA1606 and pA1209 carry an open reading frame (ORF) similar to a plasmid recombination enzyme gene described in Gram-positive bacteria. The plasmids transformed strain Rd to the ampicillin-resistant phenotype.

scholarly journals Complete Genome Sequence of a Novel Human Betapapillomavirus Isolated from a Skin Sample

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Sankhadeep Dutta ◽  
Alexis Robitaille ◽  
Dana E. Rollison ◽  
Massimo Tommasino ◽  
Tarik Gheit
Keyword(s):  
Human Papillomavirus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genetic Characterization ◽  
Open Reading Frame ◽  
Skin Sample ◽  
Reading Frame ◽  
Beta 2

ABSTRACT We report the genetic characterization of a new papillomavirus (HPV_MTS1) isolated and fully cloned from a skin swab. The L1 open reading frame of HPV_MTS1 was 85% identical to its closest human papillomavirus (HPV) type 80, which belongs to the species beta-2 of the genus Betapapillomavirus, hence qualifying it as a new HPV type.

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