scholarly journals Complete Genome Sequence of Arcanobacterium sp. Strain 2701, Isolated from a Harbor Seal

2020 ◽  
Vol 9 (38) ◽  
Author(s):  
Maria Borowiak ◽  
Mazen Alssahen ◽  
Abdulwahed Ahmed Hassan ◽  
Christoph Lämmler ◽  
Osama Sammra ◽  
...  

ABSTRACT Arcanobacterium spp. are Gram-positive bacteria which can be found in a wide range of hosts and can be associated with disease in humans and animals. Here, we announce the complete genome sequence of Arcanobacterium sp. strain 2701, isolated from a harbor seal from the North Sea.

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Jianguo Xu ◽  
Min Xu ◽  
Kai Liu ◽  
Qinyin Peng ◽  
Meifeng Tao

ABSTRACT Streptomyces sp. Sge12 was isolated from forest soil and exhibited remarkable antimicrobial activities against selected fungi and Gram-positive bacteria. Here, we report the complete genome sequence of this strain, which contains 37 putative secondary metabolite gene clusters.


2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Yongjun Wei ◽  
Xiang Gao

ABSTRACT The genus Curtobacterium belongs to the family Microbacteriaceae, within the phylum Actinobacteria. This genus includes a wide range of Gram-positive species associated with plants and soils. Here, we report the genome sequence of a new strain, Curtobacterium sp. strain YC1, which was isolated from the surface of Nostoc flagelliforme colonies. The genome of this strain contains one chromosome and one plasmid, and its size is 3.4 Mb.


2013 ◽  
Vol 1 (3) ◽  
Author(s):  
R. D. de Vries ◽  
R. J. Verburgh ◽  
M. W. G. van de Bildt ◽  
A. D. M. E. Osterhaus ◽  
R. L. de Swart

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
Maria Borowiak ◽  
Mazen Alssahen ◽  
Burkhard Malorny ◽  
Christoph Lämmler ◽  
Ursula Siebert ◽  
...  

Bacteria of the genus Arcanobacterium can be found in a variety of hosts. The species Arcanobacterium phocisimile was originally identified in a free-living harbor seal in the German North Sea in 2004. Here, we announce the complete genome sequence of Arcanobacterium phocisimile strain DSM 26142.


2020 ◽  
Author(s):  
Oceana ◽  
Helena Álvarez ◽  
Allison L. Perry ◽  
Jorge Blanco ◽  
Silvia Garcia ◽  
...  

To help fill gaps in knowledge about marine biodiversity in the North Sea, Oceana carried out two eight week research expeditions, in 2016 and 2017. Oceana’s surveys documented a wide range of habitats and species that are considered priorities for conservation, under national, EU, and international frameworks that recognise them as threatened and/or establish legal requirements for their protection.Oceana’s research has underscored the fact that much remains to be discovered about marine life on the seabed of the North Sea. Continued research is critical for informing efforts to recover biodiversity, an urgent priority in the face of the multiple, intense pressures facing the North Sea’s marine habitats and species.


2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Emma G. Piligrimova ◽  
Rustam M. Buzikov ◽  
Olesya A. Kazantseva ◽  
Andrey M. Shadrin

ABSTRACT Bacillus cereus is a Gram-positive rod-shaped spore-forming bacterium widespread in different environmental niches. Here, we report the complete genome sequence of Bacillus cereus VKM B-370 from the All-Russian Collection of Microorganisms, the host strain for bacteriophages vB_BtS_B83, vB_BcM_Sam46, vB_BcM_Sam112, and Izhevsk.


2018 ◽  
Vol 6 (7) ◽  
Author(s):  
Sondos Badran ◽  
Nathanael Morales ◽  
Phillip Schick ◽  
Brandon Jacoby ◽  
William Villella ◽  
...  

ABSTRACTBacillusspp. are ubiquitous Gram-positive microbes with many ecological and symbiotic interactions and can be pathogens. Phage Leo2 was found to infect aBacillus pumilusstrain isolated from soil. The sequence of phage Leo2 revealed 74 genes; 31% of the genes have associated functions, and 67% of coding regions are unidentified open reading frames.


2019 ◽  
Vol 8 (3) ◽  
Author(s):  
Muyiwa A. Akindolire ◽  
Bukola R. Aremu ◽  
Collins N. Ateba

Here, we announce the complete genome sequence of bacteriophage PhiG17, which is virulent to Escherichia coli O157:H7 strains and was isolated from cattle feces in the North West province of South Africa. This report presents the major genetic features of the phage PhiG17 based on its whole-genome sequence.


Ocean Science ◽  
2017 ◽  
Vol 13 (2) ◽  
pp. 315-335 ◽  
Author(s):  
Robert Marsh ◽  
Ivan D. Haigh ◽  
Stuart A. Cunningham ◽  
Mark E. Inall ◽  
Marie Porter ◽  
...  

Abstract. The European Slope Current provides a shelf-edge conduit for Atlantic Water, a substantial fraction of which is destined for the northern North Sea, with implications for regional hydrography and ecosystems. Drifters drogued at 50 m in the European Slope Current at the Hebridean shelf break follow a wide range of pathways, indicating highly variable Atlantic inflow to the North Sea. Slope Current pathways, timescales and transports over 1988–2007 are further quantified in an eddy-resolving ocean model hindcast. Particle trajectories calculated with model currents indicate that Slope Current water is largely recruited from the eastern subpolar North Atlantic. Observations of absolute dynamic topography and climatological density support theoretical expectations that Slope Current transport is to first order associated with meridional density gradients in the eastern subpolar gyre, which support a geostrophic inflow towards the slope. In the model hindcast, Slope Current transport variability is dominated by abrupt 25–50 % reductions of these density gradients over 1996–1998. Concurrent changes in wind forcing, expressed in terms of density gradients, act in the same sense to reduce Slope Current transport. This indicates that coordinated regional changes of buoyancy and wind forcing acted together to reduce Slope Current transport during the 1990s. Particle trajectories further show that 10–40 % of Slope Current water is destined for the northern North Sea within 6 months of passing to the west of Scotland, with a general decline in this percentage over 1988–2007. Salinities in the Slope Current correspondingly decreased, evidenced in ocean analysis data. Further to the north, in the Atlantic Water conveyed by the Slope Current through the Faroe–Shetland Channel (FSC), salinity is observed to increase over this period while declining in the hindcast. The observed trend may have broadly compensated for a decline in the Atlantic inflow, limiting salinity changes in the northern North Sea during this period. Proxies for both Slope Current transport and Atlantic inflow to the North Sea are sought in sea level height differences across the FSC and between Shetland and the Scottish mainland (Wick). Variability of Slope Current transport on a wide range of timescales, from seasonal to multi-decadal, is implicit in sea level differences between Lerwick (Shetland) and Tórshavn (Faroes), in both tide gauge records from 1957 and a longer model hindcast spanning 1958–2012. Wick–Lerwick sea level differences in tide gauge records from 1965 indicate considerable decadal variability in the Fair Isle Current transport that dominates Atlantic inflow to the northwest North Sea, while sea level differences in the hindcast are dominated by strong seasonal variability. Uncertainties in the Wick tide gauge record limit confidence in this proxy.


Clay Minerals ◽  
2006 ◽  
Vol 41 (1) ◽  
pp. 151-186 ◽  
Author(s):  
M. Wilkinson ◽  
R. S. Haszeldine ◽  
A. E. Fallick

AbstractThe principal clays of the northern and central North Sea are illite (sometimes with interlayered smectite) and kaolin. Chlorite is only locally important. Although it has been proposed that kaolin within North Sea sandstones is detrital in origin, the majority of workers have concluded that it is authigenic, largely the product of feldspar alteration. Kaolin is found within a wide range of sedimentary settings (and within shales) apparently defying the notion that kaolin is an indicator of meteoric water deposition. Within sandstones, the earliest authigenic kaolin has a vermiform morphology, the distribution of which is controlled by the availability of detrital mica to act as a nucleus, and the composition of the post-depositional porewaters. This vermiform kaolin formed in meteoric water, the presence of which is easily accounted for below sub-aerial exposure surfaces in non-marine formations, and below unconformities over marine units. In fully marine sands, and even marine shale units, kaolin still occurs. It has therefore been suggested that even these locations have been flushed with meteoric water.Early vermiform kaolin recrystallizes to a more blocky morphology as burial proceeds, at least in the Brent Group. Blocky kaolin has been reported as growing before, synchronously with, and after the formation of quartz overgrowths, though oxygen isotope studies support low-temperature growth, pre-quartz. Blocky kaolin may form during meteoric flushing associated with lower Cretaceous uplift and erosion, though it is found in fault blocks that are thought to have remained below sea level. Here, the kaolin may form in stagnant meteoric water, relics of the post-depositional porewater. It has also been proposed that the blocky kaolin grew in ascending basinal waters charged with carboxylic acids and CO2, though this hypothesis is not supported by stable oxygen isotope data. Some of the blocky kaolin is dickite, the stable polymorph above ∼100°C.Fibrous illite occurs almost ubiquitously within the clastic sediments of the North Sea. An early pore-lining phase has been interpreted as both infiltrated clastic clay, and as an early diagenetic phase. Early clays may have been quite smectite-rich illites, or even discrete smectites. Later, fibrous illite is undoubtedly neoformed, and can degrade reservoir quality significantly. Both within sandstones and shales, there is an apparent increase in the K content deeper than 4 km of burial, which could be due to dilution of the early smectite-rich phase by new growth illite, or to the progressive illitization of existing I-S. Much of the ‘illite’ that has been dated by the K-Ar method may therefore actually be I-S.The factors that control the formation of fibrous illite are only poorly known, though temperature must play a role. Illite growth has been proposed for almost the entire range of diagenetic temperatures (e.g. 15–20°C, Brent Group; 35–40°C, Oxfordian Sand, Inner Moray Firth; 50–90°C, Brae formation; 100–110°C, Brent Group; 130–140°C, Haltenbanken). It seems unlikely that there is a threshold temperature below which illite growth is impossible (or too slow to be significant), though this is a recurring hypothesis in the literature. Instead, illite growth seems to be an event, commonly triggered by oil emplacement or another change in the physiochemical conditions within the sandstone, such as an episode of overpressure release. Hence fibrous illite can grow at any temperature encountered during diagenesis.Although there is an extensive dataset of K-Ar ages of authigenic illites from the Jurassic of the North Sea, there is no consensus as to whether the data are meaningful, or whether the purified illite samples prepared for analysis are so contaminated with detrital phases as to render the age data meaningless. At present it is unclear about how to resolve this problem, though there is some indication that chemical micro-analysis could help. It is a common belief that illite ages record the timing of oil charge, and so can be used to calibrate basin models.Grain-coating Fe-rich chlorite cements can preserve exceptional porosity during burial. They are found in marginal marine sandstones, formed during diagenesis from precursor Fe-rich clays such as berthierine or verdine.


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