Molecular phylogeny of the Fusarium solani species complex (FSSC) isolated from soils in Iran

Members of Fusarium solani species complex (FSSC) are frequently isolated from soils, food, feeds, trees, and to some extent from humans and other animals. The taxonomic status of these fungi is being revised but no attempt has been made to identify those isolated in Iran, a mountainous country with a high biodiversity. The objective of the present research was to study the phylogenetic diversity of FSSC strains recovered from soils in Iran by analyzing morphological characteristics and DNA sequences. A total of 65 strains belonging to the FSSC were recovered from agricultural soils in western Iran. Based on differences in their morphological characters, 25 strains were selected for phylogenetic analysis employing translation elongation factor-1α (tef1) and internal transcribed spacer (ITS) region sequences. Comparisons of DNA sequence data revealed that all isolates belonged to Fusarium falciforme, Fusarium keratoplasticum, Fusarium petroliphilum, the unnamed species FSSC 5, and unknown species of Fusarium, which represents a new lineage within members of Clade 3. Based on morphological features and phylogenetic study, F. keratoplasticum and F. petroliphilum were reported for the first time in Iran.

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First Report of Tuber Rot Disease of Kala Zeera Caused by a Member of the Fusarium solani Species Complex in India

Plant Disease ◽

10.1094/pdis-02-12-0148-pdn ◽

2012 ◽

Vol 96 (7) ◽

pp. 1067-1067 ◽

Cited By ~ 1

Author(s):

V. Gupta ◽

D. John ◽

V. K. Razdan ◽

S. K. Gupta

Keyword(s):

Fusarium Solani ◽

Species Complex ◽

Morphological Characteristics ◽

Distilled Water ◽

Conidial Suspension ◽

Potato Dextrose Broth ◽

First Report ◽

Fusarium Solani Species Complex ◽

Rot Disease ◽

Tuber Rot

Bunium persicum (Kala zeera, also black cumin) is an economically important culinary crop that is cultivated for its seed pods and its tuberlike roots. In India, high-altitude regions of Himachal Pradesh, including the Padder valley and the Gurez area of Jammu and Kashmir, are areas of kalazeera production (3). In 2008 to 2009, tuber rot disease of kala zeera was observed during the late spring season in the Padder valley. Symptomatic plants were distributed in localized areas in the field and the symptoms included drying of foliage and rotting of tubers. White mycelia were found on the tubers at the late stages of disease development. Incidence of infection in the surveyed area was 80 to 90%. Yield losses were 50 to 60%. To isolate the causal pathogen, we cultured tissues from symptomatic tubers. Small bits of the infected tissue were surface disinfested in 0.1% mercuric chloride, followed by rinsing three times in sterile distilled water. The surface disinfested tissues were plated on potato dextrose agar (PDA) and incubated at 27°C for 4 days. Pure cultures of the mycelium from the diseased tissues were transferred to a second set of PDA for species identification. The fungus produced three types of spores: small, one-celled, oval microconidia; large, slightly curved, septate macroconidia; and rounded, thick-walled chlamydospores. Microconidia were mostly non-septate and 8.91 to 15.73 × 2.3 to 3.5 μm, whereas macroconidia were three- to five-septate and were 35.55 to 54.74 × 3.91 to 6.5 μm. On the basis of morphological characteristics (1), the fungus was identified and deposited as a member of the Fusarium solani species complex in the Indian Type Culture Collection, New Delhi (ID No. 8422.11). To confirm pathogenicity, healthy tubers were submerged for 20 min in a conidial suspension of the isolated fungus (1 × 105 cfu/ml), which was prepared in potato dextrose broth, incubated for 10 days at 27°C, and centrifuged at 140 rpm. Noninoculated controls were submerged in distilled water. Inoculated and control tubers were then planted in separate pots filled with sterilized soil and kept in a shade house. Symptoms appeared on inoculated tubers 9 to 10 days after planting. Signs of the pathogen in the form of mycelia were present. The tubers rotted and died 12 to 15 days after inoculation. Control tubers did not display any symptoms. F. solani species complex was reisolated from inoculated tubers, fulfilling Koch's postulates. F. solani has been reported to cause corm rot on gladiolus and saffron (2). To our knowledge, this is the first report of the F. solani species complex as pathogenic to tubers of kalazeera in India. References: (1) C. Booth. The Genus Fusarium. 47, 1971. (2) L. Z. Chen et al. J. Shanghai Agric. College 12:240, 1994. (3) K. S. Panwar et al. Agriculture Situation in India. 48:151, 1993.

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Toward a Natural Classification of Botryosphaeriaceae: A Study of the Type Specimens of Botryosphaeria sensu lato

Frontiers in Microbiology ◽

10.3389/fmicb.2021.737541 ◽

2021 ◽

Vol 12 ◽

Author(s):

Ying Zhang ◽

Yupei Zhou ◽

Wei Sun ◽

Lili Zhao ◽

D. Pavlic-Zupanc ◽

...

Keyword(s):

Dna Sequence ◽

Dna Sequences ◽

Sequence Data ◽

Morphological Characteristics ◽

Taxonomic Status ◽

Morphological Characters ◽

Phylogenetic Position ◽

Type Specimens ◽

Natural Classification ◽

Dna Sequence Data

The genus Botryosphaeria includes more than 200 epithets, but only the type species, Botryosphaeria dothidea and a dozen or more other species have been identified based on DNA sequence data. The taxonomic status of the other species remains unconfirmed because they lack either morphological information or DNA sequence data. In this study, types or authentic specimens of 16 “Botryosphaeria” species are reassessed to clarify their identity and phylogenetic position. nuDNA sequences of four regions, ITS, LSU, tef1-α and tub2, are analyzed and considered in combination with morphological characteristics. Based on the multigene phylogeny and morphological characters, Botryosphaeria cruenta and Botryosphaeria hamamelidis are transferred to Neofusicoccum. The generic status of Botryosphaeria aterrima and Botryosphaeria mirabile is confirmed in Botryosphaeria. Botryosphaeria berengeriana var. weigeliae and B. berengeriana var. acerina are treated synonyms of B. dothidea. Botryosphaeria mucosa is transferred to Neodeightonia as Neodeightonia mucosa, and Botryosphaeria ferruginea to Nothophoma as Nothophoma ferruginea. Botryosphaeria foliicola is reduced to synonymy with Phyllachorella micheliae. Botryosphaeria abuensis, Botryosphaeria aesculi, Botryosphaeria dasylirii, and Botryosphaeria wisteriae are tentatively kept in Botryosphaeria sensu stricto until further phylogenetic analysis is carried out on verified specimens. The ordinal status of Botryosphaeria apocyni, Botryosphaeria gaubae, and Botryosphaeria smilacinina cannot be determined, and tentatively accommodate these species in Dothideomycetes incertae sedis. The study demonstrates the significance of a polyphasic approach in characterizing type specimens, including the importance of using of DNA sequence data.

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Morphology, pathogenicity and molecular identification of Fusarium solani species complex (FSSC) associated with potato tubers

10.21203/rs.3.rs-147809/v1 ◽

2021 ◽

Author(s):

Youssuf Gherbawy ◽

Mohamed Hussein ◽

Nabila Hassany ◽

Yassmin Shebany ◽

Mohamed Awad ◽

...

Keyword(s):

Fusarium Solani ◽

Species Complex ◽

Sequence Data ◽

Solanum Tuberosum L ◽

Elongation Factor ◽

Molecular Characteristics ◽

Potato Tubers ◽

Dry Rot ◽

Upper Egypt ◽

Fusarium Solani Species Complex

Abstract Potato (Solanum tuberosum L.) is among the top five crops growing worldwide following cereals, wheat, rice, corn and barley due to its high carbohydrate content and adaptability. Potatoes are particularly valued in developing countries as a rich source of starch, vitamins C and B6 and essential amino acids. Fusarium solani species complex (FSSC) is common pathogen of potato, causing dry rot in the Upper Egypt. In this study were isolated and identified FSSC from potato tubers based on the morphological and molecular characteristics. 187 isolates of Fusarium solani were obtained from potato tubers collected from different regions in the Upper Egypt. Based on the morphological characters, sequence data from β-tubulin and translation elongation factor (TEF-1α) genes, all of the selected FSSC isolates were divided into three major groups (F. keratoplasticum, F. falciforme and F. solani). All the tested FSSC were able to produce amylases. All of the isolates were evaluated for their pathogenicity on healthy potato tubers; which showed pathogenic effect, lesion sizes were quite variable. F. solani (SVUFs73) had a highly virulent effect.

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Natural occurrence of the Fusarium solani on Tityus stigmurus (Thorell, 1876) (Scorpiones: Buthidae)

Brazilian Journal of Biology ◽

10.1590/s1519-69842010000100021 ◽

2010 ◽

Vol 70 (1) ◽

pp. 151-153 ◽

Cited By ~ 6

Author(s):

PL. Santana-Neto ◽

CMR. Albuquerque ◽

APP. Silva ◽

VM. Svedese ◽

EALA. Lima

Keyword(s):

Fusarium Solani ◽

Species Complex ◽

Morphological Characteristics ◽

Natural Occurrence ◽

Fusarium Solani Species Complex

Members of the Fusarium solani species complex are agents of human mycoses, also affecting plants and other animals. Nevertheless, this fungus has not been reported on scorpions. Ten specimens of Tityus stigmurus collected in the field and showing their surface covered by white mycelia were used to assess fungus presence in the animal after its death. Identification of the fungi was based upon the cultural and morphological characteristics. The fungus was isolated from chelicerae and intersegmental regions. Infected individuals had their behaviour modified by reducing feeding and locomotion. None of the infected individuals survived. It is likely that this fungus may have a role in the regulation of field scorpion populations.

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First Report of Stem Rot of Papaya Caused by Fusarium solani Species Complex in Brazil

Plant Disease ◽

10.1094/pdis-06-12-0519-pdn ◽

2013 ◽

Vol 97 (1) ◽

pp. 140-140 ◽

Cited By ~ 2

Author(s):

K. C. Correia ◽

B. O. Souza ◽

M. P. S. Câmara ◽

S. J. Michereff

Keyword(s):

Dna Sequences ◽

Fusarium Solani ◽

Species Complex ◽

Morphological Characteristics ◽

Molecular Techniques ◽

Northeastern Brazil ◽

Stem Rot ◽

Morphological Identification ◽

Single Spore ◽

First Report

In October 2010, 2-year-old papaya (cv. Hawaii) trees with high incidence of stem rot were observed during a survey conducted in Rio Grande do Norte state, northeastern Brazil. Stems showing reddish brown-to-dark brown symptoms were collected and small pieces (4 to 5 mm) of necrotic tissues were surface sterilized for 1 min in 1.5% NaOCl, washed twice with sterile distilled water, and plated onto potato dextrose agar (PDA) amended with 0.5 g liter–1 streptomycin sulfate. Plates were incubated at 25°C with a 12-h photopheriod for 4 days. Pure cultures with white, fluffy aerial mycelia were obtained by subculturing hyphal tips onto PDA. Identification was made using morphological characteristics and DNA based molecular techniques. Colonies grown on PDA and Spezieller Nährstoffarmer agar (SNA) for 10 days at 25°C with a 12-h photoperiod were used for morphological identification (3). The fungus produced cream sporodochia and two types of spores: microconidia were thin-walled, hyaline, ovoid, one-celled, and 6.8 to 14.6 × 2.3 to 4.2 μm; macroconidia were thick walled, hyaline, slightly curved, 3- to 5-celled, and 25.8 to 53.1 × 3.9 to 5.7 μm. Fifty spores of each type were measured. Rounded, thick-walled chlamydospores were produced, with two to four arranged together. On the basis of morphological characteristics (1), three fungal isolates (CMM-3825, CMM-3826, and CMM-3827) were identified as Fusarium solani (Mart.) Sacc. and were deposited in the Culture Collection of Phytopathogenic Fungi of the Universidade Federal Rural de Pernambuco (Recife, Brazil). Single-spore isolates were obtained and genomic DNA of the isolates was extracted and a portion of the translation elongation factor 1-alpha (EF1-α) gene of the isolates was amplified and sequenced (2). When compared with sequences available in the GenBank and Fusarium-ID databases, DNA sequences of the three isolates shared 99 to 100% sequence identity with F. solani species complex (GenBank Accession Nos. JF740784.1, DQ247523.1, and DQ247017.1). Representative sequences of the isolates were deposited in GenBank (Accession Nos. JQ808499, JQ808500, and JQ808501). Pathogenicity tests were conducted with four isolates on 3-month-old papaya (cv. Hawaii) seedlings. Mycelial plugs taken from the margin of actively growing colonies (PDA) of each isolate were applied in shallow wounds (0.4 cm in diameter) on the stem (center) of each plant. Inoculation wounds were wrapped with Parafilm. Control seedlings received sterile PDA plugs. Inoculated and control seedlings (10 each) were kept in a greenhouse at 25 to 30°C. After 2 weeks, all inoculated seedlings showed reddish brown necrotic lesions in the stems. No symptoms were observed in the control plants. The pathogen was successfully reisolated from symptomatic plants to fulfill Koch's postulates. To our knowledge, this is the first report of F. solani species complex causing papaya stem rot in Brazil. Papaya is an important fruit crop in the northeastern Brazil and the occurrence of this disease needs to be taken into account in papaya production. References: (1) C. Booth. Fusarium Laboratory Guide to the Identification of the Major Species. CMI, Kew, England, 1977. (2) D. M. Geiser et al. Eur. J. Plant Pathol. 110:473, 2004. (3) J. F. Leslie and B. A. Summerell. The Fusarium Laboratory Manual. Blackwell Publishing, Ames, IA, 2006.

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Pathogenicity and Distribution of Fusarium solani Isolates Associated with Erythrina Decline in Japan

Plant Disease ◽

10.1094/pdis-01-19-0044-re ◽

2020 ◽

Vol 104 (3) ◽

pp. 731-742

Author(s):

Kuya Takashina ◽

Izumi Chuma ◽

Hisashi Kajimura ◽

Norikazu Kameyama ◽

Chiaki Goto ◽

...

Keyword(s):

Fusarium Solani ◽

Species Complex ◽

Sequence Data ◽

Its Sequence ◽

Inoculation Experiment ◽

Ambrosia Beetles ◽

Okinawa Island ◽

Fusarium Solani Species Complex ◽

Ishigaki Island ◽

Fusarium Dieback

Erythrina spp. trees have been declining since the 2000s worldwide, and fungi belonging to Fusarium solani species complex (FSSC) have been suggested to be a causal factor of decline and mortality of Erythrina variegata trees in Okinawa Island, Japan. In addition to the FSSC isolate grouped as “it-1” based on ITS sequence data (previously called strain A), we conducted an inoculation experiment with two isolates grouped as “it-2” (previously strain B), which is genetically close to it-1. Two it-2 isolates originating from two islands showed pathogenicity to E. variegata with the same symptoms as those caused by it-1 isolate. We also found the isolates of it-1 and it-2 were widely distributed, including on Ishigaki Island, ∼400 km south of Okinawa Island across the ocean. All isolates of it-1 and it-2 belong to the ambrosia Fusarium clade of the FSSC, a group of symbionts of ambrosia beetles, including the pathogens of Fusarium dieback in avocados and teas. The detection of ambrosia beetles Euwallacea spp. from our specimens provided information on the vectors of the pathogens. Our present results suggest the fungi of the FSSC could be responsible for the Erythrina decline in other areas with damage.

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Morphology, pathogenicity, and molecular identification of Fusarium solani species complex (FSSC) associated with potato tubers

10.21203/rs.3.rs-152393/v1 ◽

2021 ◽

Author(s):

Youssuf A. Gherbawy ◽

Mohamed A. Hussein ◽

Nabila A. Hassany ◽

Mohamed F. Awad ◽

Yassmin M. Shebany ◽

...

Keyword(s):

Fusarium Solani ◽

Species Complex ◽

Sequence Data ◽

Elongation Factor ◽

Morphological Characteristics ◽

Essential Amino Acids ◽

Molecular Characteristics ◽

Potato Tubers ◽

Dry Rot ◽

Upper Egypt

Abstract Potato (Solanum tuberosum L.) is among the top five crops growing worldwide following cereals, rice, wheat, barley and corn due to its high carbohydrate content and adaptability. Potatoes are particularly valued in developing countries as a rich source of vitamins C and B6, starch and essential amino acids. Fusarium solani species complex (FSSC) is a common pathogen of potato, causing dry rot in the Upper Egypt. In this study were isolated and identified FSSC from potato tubers based on the morphological followed by molecular characteristics. 187 isolates of Fusarium solani were achieved from infected and non-infected potato tubers gathered from different markets in the Upper Egypt. Dependent upon the morphological characteristics, sequence data from amplifying β-tubulin and specific translation elongation factor (TEF-1α) genes, all of the selected FSSC isolates were divided into three major groups (F. keratoplasticum, F. falciforme and F. solani). All the tested FSSC were capable of producing amylases. All of the isolates were examined for their pathogenic ability on healthy potato tubers, which showed pathogenic effects; with lesion sizes were quite variable. F. solani SVUFs73 showed a highly virulent effect.

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