scholarly journals Inheritance studies of apple scab resistance and identification of Rvi14, a new major gene that acts together with other broad-spectrum QTL

Genome ◽  
2008 ◽  
Vol 51 (8) ◽  
pp. 657-667 ◽  
Author(s):  
V. Soufflet-Freslon ◽  
L. Gianfranceschi ◽  
A. Patocchi ◽  
C.-E. Durel
Keyword(s):  
Broad Spectrum ◽  
Quantitative Resistance ◽  
Venturia Inaequalis ◽  
Major Gene ◽  
Durable Resistance ◽  
Apple Scab ◽  
Genomic Region ◽  
Scab Resistance ◽  
Common Disease ◽  
Breeding Programmes

Scab, caused by the fungal pathogen Venturia inaequalis , is the most common disease of cultivated apple (Malus ×domestica). The fungal races 6 and 7 have now overcome the major resistance gene Vf, which is widely used in apple breeding programmes. New breeding strategies to achieve durable resistance are thus necessary. The aim of this study was to determine the genetic basis of quantitative resistance of the apple cultivar ‘Dülmener Rosenapfel’, known to be scab resistant under different environmental conditions. An F1 progeny derived from the cross between the susceptible cultivar ‘Gala’ and ‘Dülmener Rosenapfel’ was tested in a greenhouse with a multi-isolate inoculum of V. inaequalis. Rvi14, a new major gene that conditions a chlorotic-type reaction, was mapped on linkage group (LG) 6 in a genomic region not known to be involved in disease resistance. A further three quantitative trait loci (QTL) for resistance were identified. One co-localized with Rvi14 on LG6, whereas the remaining two were detected on LG11 and LG17, in genomic regions already reported to carry broad-spectrum QTL in other genetic backgrounds. Since a selective genotyping approach was used to detect QTL, an expectation-maximization (EM) computation was used to estimate the corrected QTL contributions to phenotypic variation and was validated by entire progeny genotyping.

scholarly journals Ten Years of VINQUEST: First Insight for Breeding New Apple Cultivars With Durable Apple Scab Resistance

Plant Disease ◽  
2020 ◽  
Vol 104 (8) ◽  
pp. 2074-2081 ◽  
Author(s):  
Andrea Patocchi ◽  
Andreas Wehrli ◽  
Pierre-Henri Dubuis ◽  
Annemarie Auwerkerken ◽  
Carmen Leida ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Venturia Inaequalis ◽  
Durable Resistance ◽  
Apple Scab ◽  
Resistance Breeding ◽  
Scab Resistance ◽  
Data Points ◽  
Resistance Breakdown ◽  
Apple Cultivars ◽  
Apple Production

Apple scab, caused by Venturia inaequalis, is a major fungal disease worldwide. Cultivation of scab-resistant cultivars would reduce the chemical footprint of apple production. However, new apple cultivars carrying durable resistances should be developed to prevent or at least slow the breakdown of resistance against races of V. inaequalis. One way to achieve durable resistance is to pyramid multiple scab resistance genes in a cultivar. The choice of the resistance genes to be combined in the pyramids should take into account the frequency of resistance breakdown and the geographical distribution of apple scab isolates able to cause such breakdowns. In order to acquire this information and to make it available to apple breeders, the VINQUEST project ( www.vinquest.ch ) was initiated in 2009. Ten years after launching this project, 24 partners from 14 countries regularly contribute data. From 2009 to 2018, nearly 9,000 data points have been collected. This information has been used to identify the most promising apple scab resistance genes for developing cultivars with durable resistance, which to date are: Rvi5, Rvi11, Rvi12, Rvi14, and Rvi15. As expected, Rvi1, together with Rvi3 and Rvi8, were often overcome, and have little value for scab resistance breeding. Rvi10 may also belong to this group. On the other hand, Rvi2, Rvi4, Rvi6, Rvi7, Rvi9, and Rvi13 are still useful for breeding, but their use is recommended only in extended pyramids of ≥3 resistance genes.

scholarly journals New North American isolates of Venturia inaequalis can overcome apple scab resistance of Malus floribunda 821

2019 ◽  
Author(s):  
David Papp ◽  
Jugpreet Singh ◽  
David Gadoury ◽  
Awais Khan
Keyword(s):  
New York ◽  
Genetic Structure ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Venturia Inaequalis ◽  
Durable Resistance ◽  
Apple Scab ◽  
Scab Resistance ◽  
Breeding Programs ◽  
Malus Floribunda

AbstractApple scab, caused by Venturia inaequalis (Cke.) Wint., is a destructive fungal disease of major apple cultivars worldwide, most of which are moderately to highly susceptible. Thus, development of scab resistant cultivars is one of the highest priorities of apple breeding programs. The principal source of resistance for breeding programs has been the scab resistance gene Rvi6 that originated from the Japanese crabapple Malus floribunda (Sieb.) sel. 821. Isolates of V. inaequalis able to overcome Rvi6 have been identified in Europe, but have not yet been reported on the American continents. We recently discovered scab infection on M. floribunda 821 trees in a research orchard at Geneva, New York, USA, where approximately 10% of the leaves bore profusely sporulating apple scab lesions, many of which had coalesced to cover entire leaves. Chlorosis and pinpoint pitting symptoms typical of failed infections by V. inaequalis on hosts bearing the Rvi6 and Rvi7 genes were also observed. We assessed genetic diversity and population genetic structure of six V. inaequalis isolates collected from M. floribunda 821, one isolate from ‘Nova Easygro’, one isolate from ‘Golden Delicious’ and two isolates from Europe (11 isolates in total) using 16,321 genome-wide SNPs. Population genetic structure and PCA separated the isolates into distinct European and USA groups. The forgoing suggests that the new Rvi6 virulent isolates emerged within USA populations, rather than being transported from Europe. The overcoming of resistance in M. floribunda 821 but not in descendant cultivars suggests that durable resistance to apple scab will require a more comprehensive understanding of Rvi6 mediated resistance in diverse genetic backgrounds.

scholarly journals Mapping of Quantitative Trait Loci for Scab Resistance in Apple (Malus × Domestica)

2021 ◽  
Author(s):  
Saba Mir ◽  
Aafreen Sakina ◽  
Khalid Z. Masoodi ◽  
Khalid M. Bhat ◽  
Bilal A. Padder ◽  
...  
Keyword(s):  
Quantitative Trait Loci ◽  
Quantitative Trait ◽  
Venturia Inaequalis ◽  
Durable Resistance ◽  
Genetic Resistance ◽  
In Silico Analysis ◽  
Genomic Region ◽  
Scab Resistance ◽  
Chromosome 2 ◽  
Trait Loci

Abstract Scab caused by Venturia inaequalis (Cke.) Wint. is the most important fungal disease of apple. Fungicide application is a widely practiced method of disease control. The use of chemicals is however, cost intensive, tedious and ecologically unsafe. Development of genetic resistance and breeding of resistant cultivars is most reliable and a safest option. One such source of scab resistance happens to be the variety ‘Shireen’, released from SKUASTKashmir. However, till date the nature of resistance and its genetic control has not been characterized. The aim of this research was to elucidate the genetic basis of scab resistance in Shireen. The present study helped us to identify two quantitative trait loci (QTLs) on chromosome 2 and 8 and six potential CDGs for the polygenic resistance in ‘Shireen’. The genomic region corresponding to the mapped QTLs in LG 2 and LG 8 of ‘Shireen’ was examined for candidate genes possibly related to scab resistance using in silico analysis. The QTLs mapped in the genetic background of Shireen are the novel QTLs and may be transferred to desirable genetic backgrounds and provide opportunities for isolation and cloning of genes apart from their utility in order to achieve durable resistance to scab.

A study of scab resistance in 16 apple progenies using parents with partial scab resistance

2009 ◽  
Vol 89 (4) ◽  
pp. 693-699 ◽  
Author(s):  
C R Hampson ◽  
H A Quamme ◽  
P L Sholberg
Keyword(s):  
Combining Ability ◽  
Partial Resistance ◽  
Venturia Inaequalis ◽  
Major Gene ◽  
Block Design ◽  
Apple Scab ◽  
Field Resistance ◽  
Specific Combining Ability ◽  
Scab Resistance ◽  
Breeding Value

A study was conducted to examine the inheritance of partial resistance to apple scab [Venturia inaequalis (Cke.) Wint.] using as parents a set of apple (Malus × domestica Borkh.) cultivars that show a range of field resistance to the disease, but are not known to carry any major-gene resistance. Akane, Alkmene, Antonovka, Carola, Chehalis, Goldgelbe, Katja and Summerred were used as pollen parents, and Spartan and an unnamed selection of Splendour × Gala parentage were used as seed parents in a factorial 2 × 8 mating design. One hundred seedlings of each family were planted in a randomized complete block design at a site with heavy annual natural scab infections. Each seedling was rated for infection severity for 3 consecutive years using a six-point categorical scale. A χ2 procedure was used to estimate the contribution of each parent to field resistance (analogous to general combining ability, GCA) and the contribution of the particular male-female combination (analogous to specific combining ability, SCA). Infection severity tended to increase over the 3 yr of the study. Antonovka and Chehalis had the highest analogous GCA for resistance (defined here as absence of sporulating lesions). Specific combining ability was present in 2 of 3 yr, but was small in magnitude relative to GCA. The field resistance of a given parent tended to be a poor predictor of its breeding value. However, 13 of the 16 families had at least 30% of seedlings with a potentially useful degree of partial resistance (low severity of infection). The results are discussed in the context of breeding apples with durable scab resistance.Key words: Fruit breeding, Malus, partial resistance, Venturia inaequalis

scholarly journals New North American Isolates of Venturia inaequalis Can Overcome Apple Scab Resistance of Malus floribunda 821

Plant Disease ◽  
2020 ◽  
Vol 104 (3) ◽  
pp. 649-655 ◽  
Author(s):  
David Papp ◽  
Jugpreet Singh ◽  
David Gadoury ◽  
Awais Khan
Keyword(s):  
Genetic Structure ◽  
Population Genetic Structure ◽  
North American ◽  
Population Genetic ◽  
Venturia Inaequalis ◽  
Durable Resistance ◽  
Apple Scab ◽  
Scab Resistance ◽  
Breeding Programs ◽  
Malus Floribunda

Apple scab, caused by Venturia inaequalis, is a destructive fungal disease of major apple cultivars worldwide, most of which are moderately to highly susceptible. Thus, development of scab resistant cultivars is one of the highest priorities of apple breeding programs. The principal source of resistance for breeding programs has been the scab resistance gene Rvi6 that originated from the Japanese crabapple Malus floribunda (Sieb.) sel. 821. Isolates of V. inaequalis able to overcome Rvi6 have been identified in Europe, but have not yet been reported on the American continents. We recently discovered scab infection on M. floribunda 821 trees in a research orchard at Geneva, NY, U.S.A., where approximately 10% of the leaves bore profusely sporulating apple scab lesions, many of which had coalesced to cover entire leaves. We observed both chlorosis, typical to Rvi6, and pinpoint pitting symptoms typical to failed infections by V. inaequalis on hosts bearing the Rvi7 gene. We assessed genetic diversity and population genetic structure of 11 V. inaequalis isolates in total, of North American and European origin, isolated from M. floribunda 821, ‘Nova Easygro’, ‘Golden Delicious’, TSR33T239, ‘Schone van Boskoop’, and ‘Prima’, using 16,321 genome-wide SNPs. Population genetic structure and PCA separated the isolates into distinct European and U.S. groups. The forgoing suggests that the new Rvi6 virulent isolates emerged within U.S. populations, rather than being transported from Europe. The complete resistance breakdown in M. floribunda 821 but not in descendant cultivars, which kept their field resistance, suggests that durable resistance to apple scab will require a more comprehensive understanding of Rvi6 mediated resistance in diverse genetic backgrounds.

scholarly journals Molecular Markers for the Scab Resistance (Vf) Region in Apple

1998 ◽  
Vol 123 (6) ◽  
pp. 992-996 ◽  
Author(s):  
Minou Hemmat ◽  
Norman F. Weeden ◽  
Herb S. Aldwinckle ◽  
Susan K. Brown
Keyword(s):  
Rapd Markers ◽  
Bulked Segregant Analysis ◽  
Venturia Inaequalis ◽  
Apple Scab ◽  
Scab Resistance ◽  
Resistant Plant ◽  
Tight Linkage ◽  
Test Population ◽  
Rate Selection ◽  
Selection Of

Bulked segregant analysis was used to identify RAPD markers that display tight linkage to the Vf gene in apple (Malus sp.) that confers resistance to five races of apple scab [Venturia inaequalis (Cke.) Wint.]. We identified several new RAPD markers linked to Vf. The most tightly linked marker in the test population, S52500, was cloned and sequenced. A linkage map of the Vf region was developed using these markers, RAPD markers previously described by other laboratories, and the isozyme locus Pgm-1. An assay was developed for Vf by multiplexing the two markers closely flanking the Vf locus. This assay has a theoretical `escape' value (discarding a resistant plant) of 3% and an error rate (selection of a susceptible plant) of 0.02%.

scholarly journals The Rvi15 (Vr2) Apple Scab Resistance Locus Contains Three TIR-NBS-LRR Genes

2010 ◽  
Vol 23 (5) ◽  
pp. 608-617 ◽  
Author(s):  
Paolo Galli ◽  
Andrea Patocchi ◽  
Giovanni Antonio Lodovico Broggini ◽  
Cesare Gessler
Keyword(s):  
Venturia Inaequalis ◽  
Interleukin 1 ◽  
Apple Scab ◽  
Scab Resistance ◽  
Receptor Protein ◽  
Resistance Locus ◽  
Fresh Market ◽  
High Quality ◽  
Bac Clone ◽  
Bac Contig

Scab caused by the pathogen Venturia inaequalis is considered the most important fungal disease of cultivated apple (Malus × domestica Borkh.). In all, 16 monogenic resistances against scab have been found in different Malus spp. and some of them are currently used in apple breeding for scab-resistant cultivars. However, the self incompatibility and the long generation time of Malus spp. together with the high standards of fruit quality demanded from the fresh market render the breeding of high-quality cultivars in apple a long and expensive task. Therefore, the cloning of disease resistance genes and the use of the cloned genes for the transformation of high-quality apple cultivars could be an approach to solve these drawbacks. We report the construction of a bacterial artificial chromosome (BAC) contig spanning the Rvi15 (Vr2) apple scab resistance locus using two GMAL 2473 BAC libraries. A single BAC clone of the contig was sufficient to span the resistance locus. The BAC clone was completely sequenced, allowing identification of a sequence of 48.6 kb going from the two closest markers (ARGH17 and 77G20RP) bracketing Rvi15 (Vr2). Analysis of the 48.6-kb sequence revealed the presence of three putative genes characterized by a Toll and mammalian interleukin-1 receptor protein nucleotide-binding site leucine-rich repeat structure. All three genes were found to be transcribed.

scholarly journals Apple Contains Receptor-like Genes Homologous to the Cladosporium fulvum Resistance Gene Family of Tomato with a Cluster of Genes Cosegregating with Vf Apple Scab Resistance

2001 ◽  
Vol 14 (4) ◽  
pp. 508-515 ◽  
Author(s):  
Boris A. Vinatzer ◽  
Andrea Patocchi ◽  
Luca Gianfranceschi ◽  
Stefano Tartarini ◽  
Hong-Bin Zhang ◽  
...  
Keyword(s):  
Gene Family ◽  
Resistance Gene ◽  
Resistance Genes ◽  
Transmembrane Domain ◽  
Venturia Inaequalis ◽  
Scab Resistance ◽  
Common Disease ◽  
Resistance Locus ◽  
Cladosporium Fulvum ◽  
High Quality

Scab caused by the fungal pathogen Venturia inaequalis is the most common disease of cultivated apple (Malus × domestica Borkh.). Monogenic resistance against scab is found in some small-fruited wild Malus species and has been used in apple breeding for scab resistance. Vf resistance of Malus floribunda 821 is the most widely used scab resistance source. Because breeding a high-quality cultivar in perennial fruit trees takes dozens of years, cloning disease resistance genes and using them in the transformation of high-quality apple varieties would be advantageous. We report the identification of a cluster of receptor-like genes with homology to the Cladosporium fulvum (Cf) resistance gene family of tomato on bacterial artificial chromosome clones derived from the Vf scab resistance locus. Three members of the cluster were sequenced completely. Similar to the Cf gene family of tomato, the deduced amino acid sequences coded by these genes contain an extracellular leucine-rich repeat domain and a transmembrane domain. The transcription of three members of the cluster was determined by reverse transcription-polymerase chain reaction to be constitutive, and the transcription and translation start of one member was verified by 5′ rapid amplification of cDNA ends. We discuss the parallels between Cf resistance of tomato and Vf resistance of apple and the possibility that one of the members of the gene cluster is the Vf gene. Cf homologs from other regions of the apple genome also were identified and are likely to present other scab resistance genes.

scholarly journals Molecular Markers for the Scab Resistance (Vf) Region in Apple

HortScience ◽  
1995 ◽  
Vol 30 (4) ◽  
pp. 855C-855 ◽  
Author(s):  
Minou Hemmat ◽  
Norman F. Weeden ◽  
Susan K. Brown
Keyword(s):  
Molecular Markers ◽  
Bulk Segregant Analysis ◽  
Rapd Markers ◽  
Venturia Inaequalis ◽  
Apple Scab ◽  
Genetic Resistance ◽  
Scab Resistance ◽  
Tight Linkage ◽  
Commercially Important ◽  
The Relationship

Apple scab, Venturia inaequalis (Cke.) Wint., is one of the most damaging diseases of apples. Although fungicide sprays have been used to control the disease, genetic resistance in existing commercially important varieties would be desirable. Identification of molecular marker(s) would be helpful in devising biotechnological approaches to control the disease. We used bulk segregant analysis to identify RAPD markers that cosegregate or display a tight linkage with Vf gene in Prima × Spartan cross. Using this approach, we are saturating the region around the scab resistance gene for the purpose of bracketing the locus. We have identified several markers associated with the Vf locus. The closest markers have been isolated and sequenced to be used as SCARs. The relationship and distances of the markers with the Vf locus and other previously reported markers will be discussed.

scholarly journals A 33-year Evaluation of Resistance and Pathogenicity in the Apple Scab–crabapples Pathosystem

HortScience ◽  
2009 ◽  
Vol 44 (3) ◽  
pp. 599-608 ◽  
Author(s):  
Janna Beckerman ◽  
James Chatfield ◽  
Erik Draper
Keyword(s):  
North America ◽  
Venturia Inaequalis ◽  
Durable Resistance ◽  
Apple Scab ◽  
Apple Breeding ◽  
Residential Landscape ◽  
Ornamental Trees ◽  
First Time ◽  
Trial Plot

Crabapples (Malus spp.) are popular ornamental trees in the commercial and residential landscape. Over a 33-year period at the Secrest Arboretum, Wooster, OH, 287 accessions of ornamental crabapple were evaluated for their resistance to apple scab caused by the fungus Venturia inaequalis. Of these 287 accessions, 31 had no symptoms of scab for longer than a 10-year period and were identified as resistant to the disease. Of these 31 resistant accessions, 14 eventually displayed symptoms, presumably as a result of infection by one or more newly present races of the pathogen in the trial plot. Notable resistance breakdowns in accessions previously classified as resistant include the development of scab on M. × ‘Prairifire’, M. × ‘Bob White’, M. × ‘Red Jewel’, and M. floribunda. Corresponding to these changes of resistance is the putative development of new V. inaequalis races in North America: Race 5, possessing virulence to the Vm gene in ‘Prairifire’; Race 3 that infects M. × ‘Geneva’ but not M. baccata ‘Dolgo’; and the first identification and report of scab on a M. floribunda population that was reported as resistant even before the first 25 years of the evaluation. The detection of scab on this species suggests the presence of Race 7 in North America for the first time. Five named accessions remained free from scab for the entire 33-year trial: M. sargentii ‘Sargent’, M. baccata ‘Jackii’, M. × ‘Beverly’, M. × ‘Silver Moon’, and M. × ‘White Angel’ and may serve as sources of durable resistance in crabapple and commercial apple breeding in the Midwest.

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