scholarly journals Predicting Longitudinal Outcomes of Alzheimer’s Disease via a Tensor-Based Joint Classification and Regression Model

Author(s):  
Lodewijk Brand ◽  
Kai Nichols ◽  
Hua Wang ◽  
Heng Huang ◽  
Li Shen ◽  
...  
2021 ◽  
Vol 16 ◽  
Author(s):  
Anshi Lin ◽  
Wei Kong ◽  
Shuaiqun Wang

Background: Advances in brain imaging and high-throughput genotyping techniques have provided new methods for studying the effects of genetic variation on brain structure and function. Traditionally, a variety of prior information has been added into the multivariate regression method for single nucleotide polymorphisms (SNPs) and quantitative traits (QTs) to improve the accuracy of prediction. In previous studies, brain regions of interest (ROIs) with different types of pathological characteristics (Alzheimer's Disease/Mild Cognitive Impairment/healthy control) can only be randomly dispersed in test cases, greatly limiting the prediction ability of the regression model and failing to obtain optimal global results. Objective: This study proposes a multivariate regression model informed by prior diagnostic information to overcome this limitation. Method: In the prediction model, we first consider traditional prior information and then design a new regularization form to integrate the diagnostic information of different sample ROIs into the model. Results: Experiments demonstrated that this method greatly improves the prediction accuracy of the model compared to other methods and selects a batch of promising pathogenic SNP loci. Conclusion: Taking into account that ROIs with different types of pathological characteristics can be employed as prior information, we propose a new method (Diagnosis-Guided Group Sparse Multitask Learning Method) that improves the ability to predict disease-related quantitative feature sites and select genetic feature factors, applying this model to research on the pathogenesis of Alzheimer's disease.


2017 ◽  
Vol 29 (9) ◽  
pp. 1535-1541 ◽  
Author(s):  
Shih-Wei Lai ◽  
Cheng-Li Lin ◽  
Kuan-Fu Liao

ABSTRACTBackground:The purpose of this paper was to examine whether glaucoma could be a non-memory manifestation of Alzheimer's disease in older people.Methods:We conducted a population-based, retrospective, case-control study to analyze the database of the Taiwan National Health Insurance Program. There were 1,351 subjects ≥65 years old with newly diagnosed Alzheimer's disease as the cases, and 5,329 subjects without any type of dementias as the controls during 2000–2011. The odds ratio (OR) and 95% confidence interval (CI) for the risk of Alzheimer's disease associated with glaucoma was estimated by the multivariable unconditional logistic regression model.Results:After controlling for confounders, the multivariable logistic regression model demonstrated that the adjusted OR of Alzheimer's disease was 1.50 in subjects with glaucoma (95% CI 1.19, 1.89), compared to subjects without glaucoma.Conclusions:Older people with glaucoma are associated with 1.5-fold increased odds of Alzheimer's disease in Taiwan. Glaucoma may be a non-memory manifestation of Alzheimer's disease in older people. Further research is needed to confirm this issue.


2021 ◽  
Vol 11 ◽  
Author(s):  
R'mani Haulcy ◽  
James Glass

Alzheimer's Disease (AD) is a form of dementia that affects the memory, cognition, and motor skills of patients. Extensive research has been done to develop accessible, cost-effective, and non-invasive techniques for the automatic detection of AD. Previous research has shown that speech can be used to distinguish between healthy patients and afflicted patients. In this paper, the ADReSS dataset, a dataset balanced by gender and age, was used to automatically classify AD from spontaneous speech. The performance of five classifiers, as well as a convolutional neural network and long short-term memory network, was compared when trained on audio features (i-vectors and x-vectors) and text features (word vectors, BERT embeddings, LIWC features, and CLAN features). The same audio and text features were used to train five regression models to predict the Mini-Mental State Examination score for each patient, a score that has a maximum value of 30. The top-performing classification models were the support vector machine and random forest classifiers trained on BERT embeddings, which both achieved an accuracy of 85.4% on the test set. The best-performing regression model was the gradient boosting regression model trained on BERT embeddings and CLAN features, which had a root mean squared error of 4.56 on the test set. The performance on both tasks illustrates the feasibility of using speech to classify AD and predict neuropsychological scores.


2020 ◽  
pp. 096228022094153 ◽  
Author(s):  
Jeffrey Lin ◽  
Kan Li ◽  
Sheng Luo

The random survival forest (RSF) is a non-parametric alternative to the Cox proportional hazards model in modeling time-to-event data. In this article, we developed a modeling framework to incorporate multivariate longitudinal data in the model building process to enhance the predictive performance of RSF. To extract the essential features of the multivariate longitudinal outcomes, two methods were adopted and compared: multivariate functional principal component analysis and multivariate fast covariance estimation for sparse functional data. These resulting features, which capture the trajectories of the multiple longitudinal outcomes, are then included as time-independent predictors in the subsequent RSF model. This non-parametric modeling framework, denoted as functional survival forests, is better at capturing the various trends in both the longitudinal outcomes and the survival model which may be difficult to model using only parametric approaches. These advantages are demonstrated through simulations and applications to the Alzheimer’s Disease Neuroimaging Initiative.


PLoS ONE ◽  
2015 ◽  
Vol 10 (5) ◽  
pp. e0128136 ◽  
Author(s):  
Chenhui Hu ◽  
Lin Cheng ◽  
Jorge Sepulcre ◽  
Keith A. Johnson ◽  
Georges E. Fakhri ◽  
...  

2021 ◽  
pp. 1-13
Author(s):  
Mo Li ◽  
Rena Li ◽  
Ji-hui Lyu ◽  
Jian-hua Chen ◽  
Wei Wang ◽  
...  

Background: The choroid is involved directly or indirectly in many pathological conditions such as Alzheimer’s disease (AD), Parkinson’s disease (PD), and multiple sclerosis (MS). Objective: The objective of this study was to investigate the association between retinal choroidal properties and the pathology of AD by determining choroidal thickness, hippocampus volume, cognitive functions, and plasma BACE1 activity. Methods: In this cross-sectional study, 37 patients with AD and 34 age-matched controls were included. Retinal choroidal thickness was measured via enhanced depth imaging optical coherence tomography. Hippocampal volume was measured via 3.0T MRI. Cognitive functions were evaluated using the Mini-Mental State Examination (MMSE) and Alzheimer’s Disease Assessment Scale-cognitive subscale (ADAS-Cog). Plasma BACE1 activity was analyzed using a fluorescence substrate-based plasma assay, and regression model were to analyze the data. Results: Retinal choroidal thickness was significantly thinner in the AD group than in the control group [(114.81±81.30) μm versus (233.79±38.29) μm, p <  0.05]. Multivariable regression analysis indicated that the ADAS-cog scores (β=–0.772, p = 0.000) and age (β=–0.176, p = 0.015) were independently associated with choroidal thickness. The logistic regression model revealed that the subfoveal choroidal thickness was a significant predictor for AD (OR = 0.984, 95% CI: 0.972–0.997). Conclusion: There was a general tendency of choroid thinning as the cognitive function declined. Although choroidal thickness was not a potential indicator for early stage AD, it was valuable in monitoring AD progression.


2021 ◽  
pp. 1-8
Author(s):  
Huimin Wang ◽  
Yanqiu Zhang ◽  
Chengyao Zheng ◽  
Songqi Yang ◽  
Xiuju Chen ◽  
...  

<b><i>Background:</i></b> Alzheimer’s disease (AD) is a chronic neurodegenerative disease. In this study, potential diagnostic biomarkers were identified for AD. <b><i>Methods:</i></b> All AD samples and healthy samples were collected from 2 datasets in the GEO database, in which differentially expressed genes (DEGs) were analyzed by using the limma package of R language. GO and KEGG pathway enrichment was conducted basing on the DEGs via the clusterProfiler package of R. And, the PPI network construction and gene prediction were performed using the STRING database and Cytoscape. Then, a logistic regression model was constructed to predict the sample type. <b><i>Results:</i></b> Bioinformatic analysis of GEO datasets revealed 2,063 and 108 DEGs in GSE5281 and GSE4226 datasets, separately, and 15 overlapping DEGs were found. GO and KEGG enrichment analysis revealed terms associated with neurodevelopment. Then, we built a logistic regression model based on the hub genes from the PPI network and optimized the model to 3 genes (ALDOA, ENC1, and NFKBIA). The values of area under the curve of the training set GSE5281 and testing set GSE4226 were 0.9647 and 0.7857, respectively, which implied the efficacy of this model. <b><i>Conclusion:</i></b> The comprehensive bioinformatic analysis of gene expression in AD patients and the effective logistic regression model built in our study may provide promising research value for diagnostic methods of AD.


Sign in / Sign up

Export Citation Format

Share Document