A MOLECULAR DYNAMICS STUDY OF OXYGEN GAS IN WATER AT DIFFERENT TEMPERATURES

2013 ◽  
Vol 27 (08) ◽  
pp. 1350023 ◽  
Author(s):  
S. K. THAPA ◽  
N. P. ADHIKARI
Keyword(s):  
Molecular Dynamics ◽  
Diffusion Coefficients ◽  
Distribution Functions ◽  
Self Diffusion ◽  
Water As Solvent ◽  
Different Temperatures ◽  
Oxygen Gas ◽  
Dynamics Simulations ◽  
Solvent Solvent

Molecular dynamics simulations of a binary mixture of oxygen gas and SPC/E water, with oxygen gas ( O 2) as solute and water as solvent, at oxygen mole fraction of 0.019 have been accomplished at different temperatures 288, 293, 298, 302 and 306 K using Groningen Machine for Chemical Simulations. The solvent–solvent, solute–solute and solute–solvent radial distribution functions (RDFs) have been estimated. The solvent–solvent (water–water) RDF has been found to agree with that obtained from NMR/X-ray data within 7%. Self-diffusion coefficients of both the solvent and the solute have been determined by means of mean-squared displacement curves using Einstein's relation. They are found to agree with experimental results very well. Darken's relation has also been invoked for the determination of mutual diffusion coefficients at the respective temperatures. The analysis of temperature dependence of the diffusion coefficients has revealed that they follow Arrhenius equation to a very good extent and are consistent with the nature of RDF's at the respective temperatures. The estimated activation energies are in excellent agreement with the available experimental data.

MOLECULAR DYNAMICS STUDY OF DIFFUSION OF DIFFERENT INERT GASES LIKE NEON AND ARGON IN WATER AT DIFFERENT TEMPERATURES

2012 ◽  
Vol 26 (03) ◽  
pp. 1250016 ◽  
Author(s):  
H. B. MOKTAN ◽  
A. PANDAY ◽  
N. P. ADHIKARI
Keyword(s):  
Molecular Dynamics ◽  
Temperature Dependence ◽  
Radial Distribution ◽  
Diffusion Coefficients ◽  
Mean Square Displacement ◽  
Distribution Functions ◽  
Inert Gases ◽  
Self Diffusion ◽  
Arrhenius Relation ◽  
Different Temperatures

Molecular dynamics study of a binary mixture of inert gases like neon and argon in SPC/E water, with the solute mole fraction of 0.023 have been accomplished at temperatures 288, 293, 298, 303, 308 and 313 K. The solvent–solvent, solute–solute and solute–solvent radial distribution functions have been estimated. The water–water radial distribution function has been found to agree well with the experimental value. Self-diffusion coefficients of both solvent and solutes have been determined by means of respective mean square displacement (MSD) curves using the Einstein's relation. The obtained values for the self-diffusion coefficients of these gases and solvent SPC/E water is found to agree well with available experimental values. The binary diffusion coefficients of these gases in water have then been estimated by using the Darken's relation. The temperature dependence of the diffusion coefficients has also been analyzed. The temperature dependence of estimated values of self-diffusion coefficients of water have been found to obey the Arrhenius relation. Self-diffusion coefficient of neon and argon is found to vary with the temperature according as Arrhenius relation.

scholarly journals Self-Diffusion Coefficients of Methane/n-Hexane Mixtures at High Pressures: An Evaluation of the Finite-Size Effect and a Comparison of Force Fields

2019 ◽  
Author(s):  
Thiago José Pinheiro dos Santos ◽  
Charlles Abreu ◽  
Bruno Horta ◽  
Frederico W. Tavares
Keyword(s):  
Molecular Dynamics ◽  
Diffusion Coefficients ◽  
High Pressures ◽  
Force Fields ◽  
Transport Coefficients ◽  
Finite Size ◽  
Finite Size Effect ◽  
Self Diffusion ◽  
Analytical Correction ◽  
Dynamics Simulations

Mass transport coefficients play an important role in process design and in compositional grading of oil reservoirs. As experimental measurements of these properties can be costly and hazardous, Molecular Dynamics simulations emerge as an alternative approach. In this work, we used Molecular Dynamics to calculate the self-diffusion coefficients of methane/n-hexane mixtures at different conditions, in both liquid and supercritical phases. We evaluated how the finite box size and the choice of the force field affect the calculated properties at high pressures. Results show a strong dependency between self-diffusion and the simulation box size. The Yeh-Hummer analytical correction [J. Phys. Chem. B, 108, 15873 (2004)] can attenuate this effect, but sometimes makes the results depart from experimental data due to issues concerning the force fields. We have also found that different all-atom and united-atom models can produce biased results due to caging effects and to different dihedral configurations of the n-alkane.

Molecular-Dynamics Analysis of the Structural Properties of Silica during Cooling

2008 ◽  
Vol 139 ◽  
pp. 101-106 ◽  
Author(s):  
Byoung Min Lee ◽  
Shinji Munetoh ◽  
Teruaki Motooka ◽  
Yeo Wan Yun ◽  
Kyu Mann Lee
Keyword(s):  
Molecular Dynamics ◽  
Glass Transition ◽  
Transition Temperature ◽  
Structural Properties ◽  
Diffusion Coefficients ◽  
The Self ◽  
Dynamics Analysis ◽  
Self Diffusion ◽  
Dynamics Simulations ◽  
Potential Parameters

The structural properties of SiO2 liquid during cooling have been investigated by molecular dynamics simulations. The interatomic forces acting on the particles are calculated by the modified Tersoff potential parameters. The glass transition temperature and structural properties of the resulting SiO2 system at various temperatures have been investigated. The fivefold coordinations of Si and threefold coordinations of O atoms were observed, and the coordination defects of system decrease with decreasing temperature up to 17 % at 300 K. The self-diffusion coefficients for Si and O atoms drop to almost zero below 3000 K. The structures were distorted at high temperatures, but very stable atomic network persisted up to high temperature in the liquid state.

A Molecular Dynamics Simulation of Molten (Li-Rb)Cl Implying the Chemla Effect of Mobilities

1980 ◽  
Vol 35 (5) ◽  
pp. 493-499 ◽  
Author(s):  
Isao Okada ◽  
Ryuzo Takagi ◽  
Kazutaka Kawamura
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Diffusion Coefficients ◽  
Strong Correlation ◽  
Pair Correlation ◽  
The Self ◽  
Dynamics Simulation ◽  
Self Diffusion ◽  
Pure Salt ◽  
Dynamics Simulations

Abstract A new transport property, the self-exchange velocity (SEV) of neighbouring unlike ions, has been evaluated from molecular dynamics simulations of molten LiCl, RbCl and LiRbCl2 at 1100 K and the mixture at 750 K. From the increase of the SEV's in the order Rb+ (pure salt) <Li+ (mixture) < Rb+ (mixture) < Li+ (pure salt), it is conjectured that there is a strong correlation between the SEV’s and the internal mobilities. An interpretation of the Chemla effect in its dependence on temperature is given. The pair correlation functions and the self-diffusion coefficients are also calculated and discussed.

scholarly journals Molecular-Dynamics Simulation of Self-Diffusion of Molecular Hydrogen in X-Type Zeolite

2013 ◽  
Vol 2013 ◽  
pp. 1-7 ◽  
Author(s):  
Xiaoming Du
Keyword(s):  
Molecular Dynamics ◽  
Diffusion Coefficients ◽  
Hydrogen Diffusion ◽  
Mean Free Path ◽  
The Self ◽  
Dynamics Simulation ◽  
Pulse Field ◽  
Self Diffusion ◽  
Hydrogen Molecules ◽  
Dynamics Simulations

The self-diffusion of hydrogen in NaX zeolite has been studied by molecular-dynamics simulations for various temperatures and pressures. The results indicate that in the temperature range of 77–293 K and the pressure range of 10–2700 kPa, the self-diffusion coefficients are found to range from 1.61 × 10−9 m2·s−1to 3.66 × 10−8 m2·s−1which are in good agreement with the experimental values from the quasielastic neutron scattering (QENS) and pulse field gradients nuclear magnetic resonance (PFG NMR) measurements. The self-diffusion coefficients decrease with increasing pressure due to packing of sorbate-sorbate molecules which causes frequent collusion among hydrogen molecules in pores and increase with increasing temperature because increasing the kinetic energy of the gas molecules enlarges the mean free path of gas molecule. The activated energy for hydrogen diffusion determined from the simulation is pressure-dependent.

scholarly journals Self-Diffusion Coefficients of Methane/n-Hexane Mixtures at High Pressures: An Evaluation of the Finite-Size Effect and a Comparison of Force Fields

2019 ◽  
Author(s):  
Thiago José Pinheiro dos Santos ◽  
Charlles Abreu ◽  
Bruno Horta ◽  
Frederico W. Tavares
Keyword(s):  
Molecular Dynamics ◽  
Diffusion Coefficients ◽  
High Pressures ◽  
Force Fields ◽  
Transport Coefficients ◽  
Finite Size ◽  
Finite Size Effect ◽  
Self Diffusion ◽  
Analytical Correction ◽  
Dynamics Simulations

Mass transport coefficients play an important role in process design and in compositional grading of oil reservoirs. As experimental measurements of these properties can be costly and hazardous, Molecular Dynamics simulations emerge as an alternative approach. In this work, we used Molecular Dynamics to calculate the self-diffusion coefficients of methane/n-hexane mixtures at different conditions, in both liquid and supercritical phases. We evaluated how the finite box size and the choice of the force field affect the calculated properties at high pressures. Results show a strong dependency between self-diffusion and the simulation box size. The Yeh-Hummer analytical correction [J. Phys. Chem. B, 108, 15873 (2004)] can attenuate this effect, but sometimes makes the results depart from experimental data due to issues concerning the force fields. We have also found that different all-atom and united-atom models can produce biased results due to caging effects and to different dihedral configurations of the n-alkane.

Structure and Dynamics of NaCl in Methanol. A Molecular Dynamics Study

1991 ◽  
Vol 46 (10) ◽  
pp. 887-897 ◽  
Author(s):  
D. Marx ◽  
K. Heinzinger ◽  
G. Pálinkás ◽  
I. Bakó
Keyword(s):  
Molecular Dynamics ◽  
Diffusion Coefficients ◽  
Distribution Functions ◽  
Dynamics Simulation ◽  
Nacl Solution ◽  
Geometrical Arrangement ◽  
Self Diffusion ◽  
Site Model ◽  
Structure And Dynamics ◽  
Dynamical Properties

AbstractA recently developed flexible three-site model for methanol was employed to perform a Molecular Dynamics simulation of a 0.6 molal NaCl solution. The ion-methanol and ion-ion potential functions were derived from ab initio calculations. The structural properties of the solution are discussed on the basis of radial and angular distribution functions, the orientation of the methanol molecules, and their geometrical arrangement in the solvation shells of the ions. The dynamical properties of the solution - like self-diffusion coefficients, hindered translations, librations, and internal vibrations of the methanol molecules - are calculated from various autocorrelation functions.

Molecular dynamics study of diffusion of krypton in water at different temperatures

2016 ◽  
Vol 30 (11) ◽  
pp. 1650064 ◽  
Author(s):  
Dipendra Bhandari ◽  
N. P. Adhikari
Keyword(s):  
Molecular Dynamics ◽  
Diffusion Coefficient ◽  
Diffusion Coefficients ◽  
Mean Square Displacement ◽  
Mutual Diffusion ◽  
Arrhenius Behavior ◽  
Self Diffusion ◽  
Velocity Autocorrelation ◽  
Different Temperatures ◽  
Self Diffusion Coefficient

Molecular dynamics study of diffusion of two krypton atoms in 300 SPC/E water molecules at temperatures 293, 303, 313, 323 and 333 K has been carried out. Self-diffusion coefficient of krypton and water along with their mutual diffusion coefficients are estimated. Self-diffusion coefficient for krypton is calculated by using Mean Square Displacement (MSD) method and Velocity Autocorrelation (VACF) method, while that for water is calculated by using MSD method only. The mutual diffusion coefficient is estimated by using the Darken’s relation. The diffusion coefficients are found to follow the Arrhenius behavior. The structural properties of the system have been estimated by the study of solute–solute, solvent–solvent, and solute–solvent Radial Distribution Function (RDF).

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