scholarly journals Random Bin for Analyzing Neuron Spike Trains

2012 ◽  
Vol 2012 ◽  
pp. 1-11
Author(s):  
Shinichi Tamura ◽  
Tomomitsu Miyoshi ◽  
Hajime Sawai ◽  
Yuko Mizuno-Matsumoto

When analyzing neuron spike trains, it is always the problem of how to set the time bin. Bin width affects much to analyzed results of such as periodicity of the spike trains. Many approaches have been proposed to determine the bin setting. However, these bins are fixed through the analysis. In this paper, we propose a randomizing method of bin width and location instead of conventional fixed bin setting. This technique is applied to analyzing periodicity of interspike interval train. Also the sensitivity of the method is presented.

Fractals ◽  
1999 ◽  
Vol 07 (01) ◽  
pp. 93-103 ◽  
Author(s):  
A. YU. SHAHVERDIAN ◽  
A. V. APKARIAN

The computational analysis of neuron spike trains shows that the changes in monotony of interspike interval values can be described by a special type of real numbers. As a result of such an arithmetical approach, we establish the presence of chaos in neuron spike trains and arrive at the conclusion that in stationary conditions, brain activity is found asymptotically close to a multidimensional Cantor space with zero Lebesgue measure, which can be understood as the brain activity attractor. The self-affinity, power law dependence, and computational complexity of neuron spike trains are also briefly examined and discussed.


2000 ◽  
Vol 12 (11) ◽  
pp. 2597-2620 ◽  
Author(s):  
Stuart N. Baker ◽  
George L. Gerstein

We outline two improvements to the technique of gravitational clustering for detection of neuronal synchrony, which are capable of improving the method's detection of weak synchrony with limited data. The advantages of the enhancements are illustrated using data with known levels of synchrony and different interspike interval distributions. The novel simulation method described can easily generate such test data. An important dependence of the sensitivity of gravitational clustering to the interspike interval distribution of the analysed spike trains is described.


1979 ◽  
Vol 35 (2) ◽  
pp. 216-217
Author(s):  
S. H. Chung ◽  
J. C. Hwang ◽  
Y. S. Chan ◽  
Y. M. Cheung ◽  
K. B. Fung

2000 ◽  
Vol 84 (4) ◽  
pp. 1770-1780 ◽  
Author(s):  
Stuart N. Baker ◽  
Roger N. Lemon

Precise spatiotemporal patterns in neural discharge are a possible mechanism for information encoding in the brain. Previous studies have found that such patterns repeat and appear to relate to key behavioral events. Whether these patterns occur above chance levels remains controversial. To address this question, we have made simultaneous recordings from between two and nine neurons in the primary motor cortex and supplementary motor area of three monkeys while they performed a precision grip task. Out of a total of 67 neurons, 46 were antidromically identified as pyramidal tract neurons. Sections of recordings 60 s long were searched for patterns involving three or more spikes that repeated at least twice. The allowed jitter for pattern repetition was 3 ms, and the pattern length was limited to 192 ms. In all 11 recordings analyzed, large numbers of repeating patterns were found. To assess the expected chance level of patterns, “surrogate” datasets were generated. These had the same moment-by-moment modulation in firing rate as the experimental spike trains, and matched their interspike interval distribution, but did not preserve the precise timing of individual spikes. The number of repeating patterns in 10 randomly generated surrogates was used to form 99% confidence limits on the repeating pattern count expected by chance. There was close agreement between these confidence limits and the number of patterns seen in the experimental data. Analysis of high complexity patterns was carried out in four long recordings (mean duration 23.2 min, mean number of neurons simultaneously recorded 7.5). This analysis logged only patterns composed of a larger number (7–11) of spikes. The number of patterns seen in the surrogate datasets showed a small but significant excess over those seen in the original experimental data; this is discussed in the context of surrogate generation. The occurrence of repeating patterns in the experimental data were strongly associated with particular phases of the precision grip task; however, a similar task dependence was seen for the surrogate data. When a repeating pattern was used as a template to find inexact matches, in which up to half of the component spikes could be missing, similar numbers of matches were found in experimental and surrogate data, and the time of occurrence of such matches showed the same task dependence. We conclude that the existence of precise repeating patterns in our data are not due to cortical mechanisms that favor this form of coding, since as many, if not more, patterns are produced by spike trains constructed only to modulate their firing rate in the same way as the experimental data, and to match the interspike interval histograms. The task dependence of pattern occurrence is explicable as an artifact of the modulation of neural firing rate. The consequences for theories of temporal coding in the cortex are discussed.


2004 ◽  
Vol 16 (10) ◽  
pp. 2125-2195 ◽  
Author(s):  
B. Scott Jackson

Many different types of integrate-and-fire models have been designed in order to explain how it is possible for a cortical neuron to integrate over many independent inputs while still producing highly variable spike trains. Within this context, the variability of spike trains has been almost exclusively measured using the coefficient of variation of interspike intervals. However, another important statistical property that has been found in cortical spike trains and is closely associated with their high firing variability is long-range dependence. We investigate the conditions, if any, under which such models produce output spike trains with both interspike-interval variability and long-range dependence similar to those that have previously been measured from actual cortical neurons. We first show analytically that a large class of high-variability integrate-and-fire models is incapable of producing such outputs based on the fact that their output spike trains are always mathematically equivalent to renewal processes. This class of models subsumes a majority of previously published models, including those that use excitation-inhibition balance, correlated inputs, partial reset, or nonlinear leakage to produce outputs with high variability. Next, we study integrate-and-fire models that have (non-Poissonian) renewal point process inputs instead of the Poisson point process inputs used in the preceding class of models. The confluence of our analytical and simulation results implies that the renewal-input model is capable of producing high variability and long-range dependence comparable to that seen in spike trains recorded from cortical neurons, but only if the interspike intervals of the inputs have infinite variance, a physiologically unrealistic condition. Finally, we suggest a new integrate-and-fire model that does not suffer any of the previously mentioned shortcomings. By analyzing simulation results for this model, we show that it is capable of producing output spike trains with interspike-interval variability and long-range dependence that match empirical data from cortical spike trains. This model is similar to the other models in this study, except that its inputs are fractional-gaussian-noise-driven Poisson processes rather than renewal point processes. In addition to this model's success in producing realistic output spike trains, its inputs have longrange dependence similar to that found in most subcortical neurons in sensory pathways, including the inputs to cortex. Analysis of output spike trains from simulations of this model also shows that a tight balance between the amounts of excitation and inhibition at the inputs to cortical neurons is not necessary for high interspike-interval variability at their outputs. Furthermore, in our analysis of this model, we show that the superposition of many fractional-gaussian-noise-driven Poisson processes does not approximate a Poisson process, which challenges the common assumption that the total effect of a large number of inputs on a neuron is well represented by a Poisson process.


2000 ◽  
Vol 82 (4) ◽  
pp. 305-311 ◽  
Author(s):  
Hideyuki Suzuki ◽  
Kazuyuki Aihara ◽  
Jun Murakami ◽  
Tateo Shimozawa

Mathematics ◽  
2020 ◽  
Vol 8 (6) ◽  
pp. 1011
Author(s):  
Simone Orcioni ◽  
Alessandra Paffi ◽  
Francesca Apollonio ◽  
Micaela Liberti

Power spectra of spike trains reveal important properties of neuronal behavior. They exhibit several peaks, whose shape and position depend on applied stimuli and intrinsic biophysical properties, such as input current density and channel noise. The position of the spectral peaks in the frequency domain is not straightforwardly predictable from statistical averages of the interspike intervals, especially when stochastic behavior prevails. In this work, we provide a model for the neuronal power spectrum, obtained from Discrete Fourier Transform and expressed as a series of expected value of sinusoidal terms. The first term of the series allows us to estimate the frequencies of the spectral peaks to a maximum error of a few Hz, and to interpret why they are not harmonics of the first peak frequency. Thus, the simple expression of the proposed power spectral density (PSD) model makes it a powerful interpretative tool of PSD shape, and also useful for neurophysiological studies aimed at extracting information on neuronal behavior from spike train spectra.


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