scholarly journals ЗАСТОСУВАННЯ ВІДКРИТОГО ПРОГРАМНОГО КОМПЛЕКСУ ДЛЯ ОБРОБКИ МЕДИЧНИХ ЗОБРАЖЕНЬ MEVISLAB ПРИ ВИВЧЕННІ КУРCУ «МЕДИЧНА ІНФОРМАТИКА»

Author(s):  
N. O. Kravets ◽  
A. V. Semenets ◽  
A. S. Sverstyuk

<p>The main capabilities of the MeVisLab image analysis suite to the medical images processing are shown. The application software package structure and the user interface are described. The methodology of the MeVisLab software package usage<br />to the studying of the corresponded topics of the Medical Informatics course is presented. An approach of the implementation of the image elements recognition algorithm is demonstrated.</p>

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Zachary Sierzega ◽  
Jeff Wereszczynski ◽  
Chris Prior

AbstractWe introduce the Writhe Application Software Package (WASP) which can be used to characterisze the topology of ribbon structures, the underlying mathematical model of DNA, Biopolymers, superfluid vorticies, elastic ropes and magnetic flux ropes. This characterization is achieved by the general twist–writhe decomposition of both open and closed ribbons, in particular through a quantity termed the polar writhe. We demonstrate how this decomposition is far more natural and straightforward than artificial closure methods commonly utilized in DNA modelling. In particular, we demonstrate how the decomposition of the polar writhe into local and non-local components distinctly characterizes the local helical structure and knotting/linking of the ribbon. This decomposition provides additional information not given by alternative approaches. As example applications, the WASP routines are used to characterise the evolving topology (writhe) of DNA minicircle and open ended plectoneme formation magnetic/optical tweezer simulations, and it is shown that the decomponsition into local and non-local components is particularly important for the detection of plectonemes. Finally it is demonstrated that a number of well known alternative writhe expressions are actually simplifications of the polar writhe measure.


Diagnostics ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 1384
Author(s):  
Yin Dai ◽  
Yifan Gao ◽  
Fayu Liu

Over the past decade, convolutional neural networks (CNN) have shown very competitive performance in medical image analysis tasks, such as disease classification, tumor segmentation, and lesion detection. CNN has great advantages in extracting local features of images. However, due to the locality of convolution operation, it cannot deal with long-range relationships well. Recently, transformers have been applied to computer vision and achieved remarkable success in large-scale datasets. Compared with natural images, multi-modal medical images have explicit and important long-range dependencies, and effective multi-modal fusion strategies can greatly improve the performance of deep models. This prompts us to study transformer-based structures and apply them to multi-modal medical images. Existing transformer-based network architectures require large-scale datasets to achieve better performance. However, medical imaging datasets are relatively small, which makes it difficult to apply pure transformers to medical image analysis. Therefore, we propose TransMed for multi-modal medical image classification. TransMed combines the advantages of CNN and transformer to efficiently extract low-level features of images and establish long-range dependencies between modalities. We evaluated our model on two datasets, parotid gland tumors classification and knee injury classification. Combining our contributions, we achieve an improvement of 10.1% and 1.9% in average accuracy, respectively, outperforming other state-of-the-art CNN-based models. The results of the proposed method are promising and have tremendous potential to be applied to a large number of medical image analysis tasks. To our best knowledge, this is the first work to apply transformers to multi-modal medical image classification.


2009 ◽  
Vol 17 (2) ◽  
Author(s):  
L. Ogiela

AbstractThe main subject of this publication is to present a selected class of cognitive categorisation systems - understanding based image analysis systems (UBIAS) which support analyses of data recorded in the form of images. Cognitive categorisation systems operate by following particular type of thought, cognitive, and reasoning processes which take place in a human mind and which ultimately lead to making an in-depth description of the analysis and reasoning process. The most important element in this analysis and reasoning process is that it occurs both in the human ability cognitive/thinking process and in the system’s information/reasoning process that conducts the in-depth interpretation and analysis of data.


Author(s):  
Yves Ligier ◽  
Matthieu Funk ◽  
Osman Ratib ◽  
René Perrier ◽  
Christian Girard

Author(s):  
Karthikeyan P. ◽  
Vasuki S. ◽  
Karthik K.

Noise removal in medical images remains a challenge for the researchers because noise removal introduces artifacts and blurring of the image. Developing medical image denoising algorithm is a difficult operation because a tradeoff between noise reduction and the preservation of actual features of image has to be made in a way that enhances and preserves the diagnostically relevant image content. A special member of the emerging family of multiscale geometric transforms is the contourlet transform which effectively captures the image edges and contours. This overcomes the limitations of the existing method of denoising using wavelet and curvelet. But due to down sampling and up sampling, the contourlet transform is shift-variant. However, shift-invariance is desirable in image analysis applications such as edge detection, contour characterization, and image enhancement. In this chapter, nonsubsampled contourlet transform (shift-invariance transform)-based denoising is presented which more effectively represents edges than contourlet transform.


2012 ◽  
Vol 1 (1) ◽  
pp. 14-38
Author(s):  
Perambur S. Neelakanta ◽  
Deepti Pappusetty

To ascertain specific features in bio-/medical-images, a new avenue of using the so-called Needleman-Wunsch (NW) and Smith-Waterman (SW) algorithms (of bioinformatics) is indicated. In general, NW/SW algorithms are adopted in genomic science to obtain optimal (global and local) alignment of two linear sequences (like DNA nucleotide bases) to determine the similarity features between them and such 1D-sequence algorithms are presently extended to compare 2D-images via binary correlation. The efficacy of the proposed method is tested with synthetic images and a brain scan image. Thus, the way of finding the location of a distinct part in a synthetic image and that of a tumour in the brain scan image is demonstrated.


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