Experimental population genetics in insects: inheritance of ISSR-PCR bands in an artificial population

Zootaxa ◽  
2009 ◽  
Vol 2231 (1) ◽  
pp. 40-46
Author(s):  
ANNA K. HUNDSDOERFER ◽  
MICHAEL WINK

Inter-simple sequence repeat (ISSR)-PCR fingerprints are being increasingly used to establish relationships between closely related animals, although their inheritance patterns have not been examined closely as yet. To better understand the genetics of this relatively novel genomic fingerprint technique and to assess the tokogenetic information content of the data for the Hyles euphorbiae (Linnaeus, 1758) complex (HEC; Lepidoptera: Sphingidae) precisely, we examined five separated pairs of moths of Hyles euphorbiae from Spain (10 moths) and their offspring as an artificial population. ISSR-PCR fingerprints were obtained with four primers and the 0/1 matrix analysed. The cluster algorithm Neighbour Joining was successful in reconstructing the families as monophyletic, although intra-familial cluster formation cannot be represented by a dichotomous branching pattern. In contrast, the band sharing index did not detect significant differences in variability between siblings and individuals of H. euphorbiae from different localities compared at random. Rather high levels of recombination were detected, which surprisingly did not appear to obscure the tokogenetic signal to a significant degree. Thus ISSR-PCR fingerprints appear to be appropriate markers to study relationships between HEC individuals of two consecutive generations, while being too variable for higher levels.

2015 ◽  
Vol 08 (05) ◽  
pp. 1550070 ◽  
Author(s):  
Lan-Ying Zhou ◽  
Xiang-Nan Wang ◽  
Li-Ping Wang ◽  
Yong-Zhong Chen ◽  
Xiao-Cheng Jiang

Genetic diversity of 51 oil-tea camellia germplasms was analyzed using the optimized inter-simple sequence repeat (ISSR)–PCR reaction system with 22 primers screened from a set of 100 ISSR primers. The results showed that 493 discernible loci with distinct electrophoretic bands were obtained, of which, 478 loci (96.78%) were polymorphic. This indicated that oil-tea germplasms possess abundant genetic diversities. By clustering analysis performed using softwares of NTSYS 2.10 and Winboot, 51 oil-tea germplasms were divided into two groups: Group I had 48 lines of Camellia oleifera Abel, while Group II had three C. oleifera Abel related species and their similarity coefficient was 0.62. Group I was further divided into Group I-1 and Group I-2, and their similarity coefficient (Gs) was 0.634. All members of Group I-1 originated from Hunan Province, while Group I-2 included the rest of Hunan lines and those originated from other regions of China. Analyzed by software POPGENE 1.32, the Shannon's information index (I*) of genetic polymorphism was 0.3852, the genetic diversity among different region populations (Ht) was 0.2537, the genetic diversity within populations (Hs) was 0.15545, the differentiation coefficient of genetic diversity among populations (Gst) was 0.3967, and the gene flow among populations (Nm*) was 0.8262. The Nei's genetic distances between the Hunan population and the populations originated from other regions of China implied that geographic isolation strongly influenced genetic differentiation among populations. Meanwhile, seedling rootstock grafting and high grafting for tree crown produced genetic variations among clonal offsprings.


2016 ◽  
Vol 39 (6) ◽  
Author(s):  
Zhiyong Li ◽  
Liu Lei ◽  
Shi Wengui ◽  
Li Hongyan ◽  
Huang Fan ◽  
...  

Alfalfa with cream flowers is differentiable and genetically stable; however, describing it in scientific research is difficult and ambiguous because of its taxonomical status. This research attempts to delimit the taxonomical status of 14 accessions, including Medicago sativa ssp. sativa, alfalfa with cream flowers, Medicago sativa ssp. falcata and Medicago ruthinica L., using morphology, chromosome karyotypes and inter simple sequence repeat (ISSR) markers. From morphology and the ISSR-PCR analysis, three accessions of M. ruthenica L. were clustered into an independent group, and the remaining 11 accessions were clustered into three groups apparently based on flower color. Alfalfa with cream flowers had its own remarkable chromosome karyotype. The genetic distance between alfalfa with cream flowers and M. sativa ssp. sativa was almost equal to that between M. sativa ssp. falcata and M. sativa ssp. sativa. In conclusion, alfalfa with cream flowers may be an independent population just like M. sativa ssp. falcate, representing a subspecies of M. sativa ssp. according to certain taxonomic principles.


2019 ◽  
Vol 78 (2) ◽  
pp. 142-146
Author(s):  
Ramazan Süleyman Göktürk ◽  
Olcay Düşen ◽  
Ergun Kaya ◽  
Betül Gürcan ◽  
Uygar Sarpkaya

Abstract Plocama calabrica (L.f.) M.Backlund & Thulin var. alba Göktürk, O.D.Düşen, B.Gürcan & U. Sarpkaya variety nova is described from South-West Anatolia. The new variety grows on limestone slopes between Akpınar and Yaylapınar villages in the Çameli district in Denizli. It is closely related to P. calabrica var. calabrica, and can be readily distinguished by morphological and molecular characters from the related variety. Taxonomic comments such as descriptive and diagnostic characters, distribution and ecology, phenology and proposed conservation status for this new variety are given in the current study. Morphological affinities and the inter-simple-sequence repeat (ISSR)-PCR based phylogenetic relationships between the new and the related variety are also discussed


HortScience ◽  
2007 ◽  
Vol 42 (2) ◽  
pp. 373-377 ◽  
Author(s):  
Troy D. Carson ◽  
Donald B. White ◽  
Alan G. Smith

Poa annua L. has long been a cultivated weed on golf courses. However, the recent development of improved cultivars of creeping bluegrass (Poa annua reptans Hausskn.) has generated an increasing interest in selection and breeding of this species. Inter-simple sequence repeat (ISSR) PCR is a relatively new method for genotype identification and measuring genetic diversity and was employed in this study for differentiating among creeping bluegrass genotypes. The objectives of this study were to test ISSR primers for production of polymorphic fragments and ascertain the applicability of ISSR PCR to distinguish closely related genotypes. Eight primers produced fragments, of which 77.3% were polymorphic, and primers UBC849, UBC850, and UMN001 produced over 75% of the total polymorphic fragments. These three primers had sufficient resolution to distinguish all but two of the diploid creeping bluegrass accessions. This method was a simple, fast, and relatively inexpensive method to produce useful DNA fragments in creeping bluegrass. It is a robust method for detecting polymorphic loci that can be used in the study of genetic relatedness, heritability, or linkage to important traits, development of linkage maps, and marker-assisted breeding.


2006 ◽  
Vol 92 (3) ◽  
pp. 606-610 ◽  
Author(s):  
F. Fonseca-Salamanca ◽  
J. J. Nogal-Ruiz ◽  
C. Benito ◽  
M. V. Camacho ◽  
A. R. Martínez-Fernández

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