scholarly journals Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping

BMC Genomics ◽  
2008 ◽  
Vol 9 (1) ◽  
pp. 129 ◽  
Author(s):  
Marine Douaud ◽  
Katia Fève ◽  
Marie Gerus ◽  
Valérie Fillon ◽  
Suzanne Bardes ◽  
...  
2015 ◽  
Vol 14 (4) ◽  
pp. 13096-13104 ◽  
Author(s):  
N.B. Stafuzza ◽  
B.C.M. Naressi ◽  
E. Yang ◽  
J.J. Cai ◽  
M.E.J. Amaral-Trusty

BMC Genomics ◽  
2012 ◽  
Vol 13 (1) ◽  
pp. 585 ◽  
Author(s):  
Bertrand Servin ◽  
Thomas Faraut ◽  
Nathalie Iannuccelli ◽  
Diana Zelenika ◽  
Denis Milan

BMC Genomics ◽  
2007 ◽  
Vol 8 (1) ◽  
pp. 310 ◽  
Author(s):  
Aparna Prasad ◽  
Thomas Schiex ◽  
Stephanie McKay ◽  
Brenda Murdoch ◽  
Zhiquan Wang ◽  
...  

Genes ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 518
Author(s):  
Zequn Chen ◽  
Xiwu Qi ◽  
Xu Yu ◽  
Ying Zheng ◽  
Zhiqi Liu ◽  
...  

Terpenoids are a wide variety of natural products and terpene synthase (TPS) plays a key role in the biosynthesis of terpenoids. Mentha plants are rich in essential oils, whose main components are terpenoids, and their biosynthetic pathways have been basically elucidated. However, there is a lack of systematic identification and study of TPS in Mentha plants. In this work, we genome-widely identified and analyzed the TPS gene family in Mentha longifolia, a model plant for functional genomic research in the genus Mentha. A total of 63 TPS genes were identified in the M. longifolia genome sequence assembly, which could be divided into six subfamilies. The TPS-b subfamily had the largest number of genes, which might be related to the abundant monoterpenoids in Mentha plants. The TPS-e subfamily had 18 members and showed a significant species-specific expansion compared with other sequenced Lamiaceae plant species. The 63 TPS genes could be mapped to nine scaffolds of the M. longifolia genome sequence assembly and the distribution of these genes is uneven. Tandem duplicates and fragment duplicates contributed greatly to the increase in the number of TPS genes in M. longifolia. The conserved motifs (RR(X)8W, NSE/DTE, RXR, and DDXXD) were analyzed in M. longifolia TPSs, and significant differentiation was found between different subfamilies. Adaptive evolution analysis showed that M. longifolia TPSs were subjected to purifying selection after the species-specific expansion, and some amino acid residues under positive selection were identified. Furthermore, we also cloned and analyzed the catalytic activity of a single terpene synthase, MlongTPS29, which belongs to the TPS-b subfamily. MlongTPS29 could encode a limonene synthase and catalyze the biosynthesis of limonene, an important precursor of essential oils from the genus Mentha. This study provides useful information for the biosynthesis of terpenoids in the genus Mentha.


2010 ◽  
Vol 8 (1) ◽  
pp. 61-65 ◽  
Author(s):  
Can Alkan ◽  
Saba Sajjadian ◽  
Evan E Eichler

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Gereon Schares ◽  
Pratap Venepally ◽  
Hernán A. Lorenzi

ABSTRACT The apicomplexan parasite Besnoitia besnoiti is the causative agent of bovine besnoitiosis that affects livestock, particularly cattle. The definitive host of B. besnoiti is unknown and its transmission only partially understood. Here, we report the first draft genome sequence, assembly, and annotation of this parasite.


Heredity ◽  
2005 ◽  
Vol 94 (6) ◽  
pp. 567-568 ◽  
Author(s):  
P Jensen

Computer ◽  
2002 ◽  
Vol 35 (7) ◽  
pp. 47-54 ◽  
Author(s):  
M. Pop ◽  
S.L. Salzberg ◽  
M. Shumway

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