scholarly journals High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research

2009 ◽  
Vol 10 (2) ◽  
pp. R16 ◽  
Author(s):  
Kathrin Reichwald ◽  
Chris Lauber ◽  
Indrajit Nanda ◽  
Jeanette Kirschner ◽  
Nils Hartmann ◽  
...  
2017 ◽  
Author(s):  
Patrick Smith ◽  
David Willemsen ◽  
Miriam Popkes ◽  
Franziska Metge ◽  
Edson Gandiwa ◽  
...  

ABSTRACTGut bacteria occupy the interface between the organism and the external environment, contributing to homeostasis and disease. Yet, the causal role of the gut microbiota during host aging is largely unexplored. Here, using the African turquoise killifish (Nothobranchius furzeri), a naturally short-lived vertebrate, we show that the gut microbiota plays a key role in modulating vertebrate life span. Recolonizing the gut of middle-age individuals with bacteria from young donors resulted in life span extension and delayed behavioral decline. This intervention prevented the decrease in microbial diversity associated with host aging and maintained a young-like gut bacterial community, characterized by overrepresentation of the key genera Exiguobacterium, Planococcus, Propionigenium and Psychrobacter. Our findings demonstrate that the natural microbial gut community of young individuals can causally induce long-lasting beneficial systemic effects that lead to life span extension in a vertebrate model.


2017 ◽  
Author(s):  
Mario Baumgart ◽  
Emanuel Barth ◽  
Aurora Savino ◽  
Marco Groth ◽  
Philipp Koch ◽  
...  

ABSTRACTBackground: The short-lived fish Nothobranchius furzeri is the shortest-lived vertebrate that can be cultured in captivity and was recently established as a model organism for aging research. Small non-coding RNAs, especially miRNAs, are implicated in age-dependent control of gene expression.Results: Here, we present a comprehensive catalogue of miRNAs and several other non-coding RNA classes (ncRNAs) for Nothobranchius furzeri. Analyzing multiple small RNA-Seq libraries, we show most of these identified miRNAs are expressed in at least one of seven Nothobranchius species. Additionally, duplication and clustering of N. furzeri miRNAs was analyzed and compared to the four fish species Danio rerio, Oryzias latipes, Gasterosteus aculeatus and Takifugu rubripes. A peculiar characteristic of N. furzeri as compared to other teleosts was a duplication of the miR-29 cluster.Conclusion: The completeness of the catalogue we provide is comparable to that of zebrafish. This catalogue represents a basis to investigate the role of miRNAs in aging and development in this species.Availability: All supplementary material can be found online at http://www.rna.uni-jena.de/en/supplements/nothobranchius-furzeri-mirnome/.


2021 ◽  
Author(s):  
Jolien Van houcke ◽  
Valerie Mariën ◽  
Caroline Zandecki ◽  
Sophie Vanhunsel ◽  
Lieve Moons ◽  
...  

SummaryThe aging central nervous system (CNS) of mammals displays progressive limited regenerative abilities. Recovery after loss of neurons is extremely restricted in the aged brain. Many research models fall short in recapitulating mammalian aging hallmarks or have an impractically long lifespan. We established a traumatic brain injury model in the African turquoise killifish (Nothobranchius furzeri), a regeneration-competent vertebrate model that evolved to naturally age extremely fast. Stab-wound injury of the aged killifish dorsal telencephalon unveils an impaired and incomplete regeneration response when compared to young individuals. Remarkably, killifish brain regeneration is mainly supported by atypical non-glial progenitors, yet their proliferation capacity appears declined with age. We identified a high inflammatory response and glial scarring to also underlie the hampered generation of new neurons in aged fish. These primary results will pave the way for further research to unravel the factor age in relation to neurorepair, and to improve therapeutic strategies to restore the injured and/or diseased aged mammalian CNS.HighlightsAging impairs neurorepair in the killifish pallium at multiple stages of the regeneration processAtypical non-glial progenitors support the production of new neurons in the naive and injured dorsal palliumThe impaired regeneration capacity of aged killifish is characterized by a reduced reactive proliferation of these progenitors followed by a decreased generation of newborn neurons that in addition, fail to reach the injury siteExcessive inflammation and glial scarring surface as potential brakes on brain repair in the aged killifish pallium


2018 ◽  
Vol 27 ◽  
pp. 15-22
Author(s):  
Hanna Reuter ◽  
Johannes Krug ◽  
Peter Singer ◽  
Christoph Englert

2014 ◽  
Vol 196 (4) ◽  
pp. 183-191 ◽  
Author(s):  
L. D’Angelo ◽  
L. Castaldo ◽  
A. Cellerino ◽  
P. de Girolamo ◽  
C. Lucini

2014 ◽  
Vol 16 (1) ◽  
pp. 63-69 ◽  
Author(s):  
Mario Baumgart ◽  
Emiliano Di Cicco ◽  
Giacomo Rossi ◽  
Alessandro Cellerino ◽  
Eva Terzibasi Tozzini

Aging Cell ◽  
2012 ◽  
Vol 11 (2) ◽  
pp. 252-261 ◽  
Author(s):  
Jeanette Kirschner ◽  
David Weber ◽  
Christina Neuschl ◽  
Andre Franke ◽  
Marco Böttger ◽  
...  

2011 ◽  
Vol 46 (4) ◽  
pp. 249-256 ◽  
Author(s):  
Emiliano Di Cicco ◽  
Eva Terzibasi Tozzini ◽  
Giacomo Rossi ◽  
Alessandro Cellerino

eLife ◽  
2017 ◽  
Vol 6 ◽  
Author(s):  
Patrick Smith ◽  
David Willemsen ◽  
Miriam Popkes ◽  
Franziska Metge ◽  
Edson Gandiwa ◽  
...  

Gut bacteria occupy the interface between the organism and the external environment, contributing to homeostasis and disease. Yet, the causal role of the gut microbiota during host aging is largely unexplored. Here, using the African turquoise killifish (Nothobranchius furzeri), a naturally short-lived vertebrate, we show that the gut microbiota plays a key role in modulating vertebrate life span. Recolonizing the gut of middle-age individuals with bacteria from young donors resulted in life span extension and delayed behavioral decline. This intervention prevented the decrease in microbial diversity associated with host aging and maintained a young-like gut bacterial community, characterized by overrepresentation of the key genera Exiguobacterium, Planococcus, Propionigenium and Psychrobacter. Our findings demonstrate that the natural microbial gut community of young individuals can causally induce long-lasting beneficial systemic effects that lead to life span extension in a vertebrate model.


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