scholarly journals A genome-wide survey of mutations in the Jurkat cell line

BMC Genomics ◽  
2018 ◽  
Vol 19 (1) ◽  
Author(s):  
Louis Gioia ◽  
Azeem Siddique ◽  
Steven R. Head ◽  
Daniel R. Salomon ◽  
Andrew I. Su
2017 ◽  
Author(s):  
Louis Gioia ◽  
Azeem Siddique ◽  
Steven R. Head ◽  
Daniel R. Salomon ◽  
Andrew I. Su

The Jurkat cell line has an extensive history as a model of T cell signaling. But at the turn of the 21st century, some irregularities were observed in Jurkat’s expression of central regulators of T cell receptor signaling, which raised doubts about how closely the cell line paralleled normal human T cells. While numerous expression deficiencies have been described in Jurkat, genetic explanations have only been provided for a handful of defects. Here, we report a comprehensive catolog of genomic variation in the Jurkat cell line based on whole-genome sequencing. With this list of all detectable, non-reference sequences, we prioritize potentially damaging mutations by mining public databases for functional effects. We confirm the majority of documented mutations in Jurkat and propose links from detrimental gene variants to observed expression abnormalities in the cell line. This work ties together decades of molecular experiments and serves as a resource that will streamline both the interpretation of past research and the design of future Jurkat studies.


2014 ◽  
Vol 14 (2) ◽  
pp. 333-339 ◽  
Author(s):  
Lingyang Xu ◽  
Yali Hou ◽  
Derek M. Bickhart ◽  
Jiuzhou Song ◽  
Curtis P. Van Tassell ◽  
...  

2021 ◽  
Vol 22 (11) ◽  
pp. 5798
Author(s):  
Shoko Tokumoto ◽  
Yugo Miyata ◽  
Ruslan Deviatiiarov ◽  
Takahiro G. Yamada ◽  
Yusuke Hiki ◽  
...  

The Pv11, an insect cell line established from the midge Polypedilum vanderplanki, is capable of extreme hypometabolic desiccation tolerance, so-called anhydrobiosis. We previously discovered that heat shock factor 1 (HSF1) contributes to the acquisition of desiccation tolerance by Pv11 cells, but the mechanistic details have yet to be elucidated. Here, by analyzing the gene expression profiles of newly established HSF1-knockout and -rescue cell lines, we show that HSF1 has a genome-wide effect on gene regulation in Pv11. The HSF1-knockout cells exhibit a reduced desiccation survival rate, but this is completely restored in HSF1-rescue cells. By comparing mRNA profiles of the two cell lines, we reveal that HSF1 induces anhydrobiosis-related genes, especially genes encoding late embryogenesis abundant proteins and thioredoxins, but represses a group of genes involved in basal cellular processes, thus promoting an extreme hypometabolism state in the cell. In addition, HSF1 binding motifs are enriched in the promoters of anhydrobiosis-related genes and we demonstrate binding of HSF1 to these promoters by ChIP-qPCR. Thus, HSF1 directly regulates the transcription of anhydrobiosis-related genes and consequently plays a pivotal role in the induction of anhydrobiotic ability in Pv11 cells.


10.1038/72799 ◽  
2000 ◽  
Vol 24 (2) ◽  
pp. 144-152 ◽  
Author(s):  
Johannes Zuber ◽  
Oleg I. Tchernitsa ◽  
Bernd Hinzmann ◽  
Anne-Chantal Schmitz ◽  
Martin Grips ◽  
...  

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