scholarly journals Aggregation-and-Attention Network for brain tumor segmentation

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Chih-Wei Lin ◽  
Yu Hong ◽  
Jinfu Liu
Keyword(s):  
Brain Tumor ◽  
Semantic Information ◽  
Spatial Relationship ◽  
Tumor Segmentation ◽  
Computer Assisted ◽  
Brain Tumor Segmentation ◽  
Attention Network ◽  
Multi Scale ◽  
Assisted Diagnosis ◽  
The Brain

Abstract Background Glioma is a malignant brain tumor; its location is complex and is difficult to remove surgically. To diagnosis the brain tumor, doctors can precisely diagnose and localize the disease using medical images. However, the computer-assisted diagnosis for the brain tumor diagnosis is still the problem because the rough segmentation of the brain tumor makes the internal grade of the tumor incorrect. Methods In this paper, we proposed an Aggregation-and-Attention Network for brain tumor segmentation. The proposed network takes the U-Net as the backbone, aggregates multi-scale semantic information, and focuses on crucial information to perform brain tumor segmentation. To this end, we proposed an enhanced down-sampling module and Up-Sampling Layer to compensate for the information loss. The multi-scale connection module is to construct the multi-receptive semantic fusion between encoder and decoder. Furthermore, we designed a dual-attention fusion module that can extract and enhance the spatial relationship of magnetic resonance imaging and applied the strategy of deep supervision in different parts of the proposed network. Results Experimental results show that the performance of the proposed framework is the best on the BraTS2020 dataset, compared with the-state-of-art networks. The performance of the proposed framework surpasses all the comparison networks, and its average accuracies of the four indexes are 0.860, 0.885, 0.932, and 1.2325, respectively. Conclusions The framework and modules of the proposed framework are scientific and practical, which can extract and aggregate useful semantic information and enhance the ability of glioma segmentation.

scholarly journals Segmentation of MRI Brain Tumor Image using Optimization based Deep Convolutional Neural networks (DCNN)

2021 ◽  
Vol 11 (1) ◽  
pp. 380-390
Author(s):  
Pradipta Kumar Mishra ◽  
Suresh Chandra Satapathy ◽  
Minakhi Rout
Keyword(s):  
Brain Tumor ◽  
Tumor Segmentation ◽  
Gray Wolf ◽  
Deep Convolutional Neural Networks ◽  
Brain Tumor Segmentation ◽  
Swarm Optimization ◽  
Brain Image ◽  
Mri Brain ◽  
Whale Optimization ◽  
The Brain

Abstract Segmentation of brain image should be done accurately as it can help to predict deadly brain tumor disease so that it can be possible to control the malicious segments of brain image if known beforehand. The accuracy of the brain tumor analysis can be enhanced through the brain tumor segmentation procedure. Earlier DCNN models do not consider the weights as of learning instances which may decrease accuracy levels of the segmentation procedure. Considering the above point, we have suggested a framework for optimizing the network parameters such as weight and bias vector of DCNN models using swarm intelligent based algorithms like Genetic Algorithm (GA), Particle Swarm Optimization (PSO), Gray Wolf Optimization (GWO) and Whale Optimization Algorithm (WOA). The simulation results reveals that the WOA optimized DCNN segmentation model is outperformed than other three optimization based DCNN models i.e., GA-DCNN, PSO-DCNN, GWO-DCNN.

scholarly journals Recurrent Multi-Fiber Network for 3D MRI Brain Tumor Segmentation

Symmetry ◽  
2021 ◽  
Vol 13 (2) ◽  
pp. 320
Author(s):  
Yue Zhao ◽  
Xiaoqiang Ren ◽  
Kun Hou ◽  
Wentao Li
Keyword(s):  
Brain Tumor ◽  
Network Architecture ◽  
Contextual Information ◽  
Computational Cost ◽  
Disease Diagnosis ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation ◽  
Fiber Network ◽  
3D Network ◽  
The Brain

Automated brain tumor segmentation based on 3D magnetic resonance imaging (MRI) is critical to disease diagnosis. Moreover, robust and accurate achieving automatic extraction of brain tumor is a big challenge because of the inherent heterogeneity of the tumor structure. In this paper, we present an efficient semantic segmentation 3D recurrent multi-fiber network (RMFNet), which is based on encoder–decoder architecture to segment the brain tumor accurately. 3D RMFNet is applied in our paper to solve the problem of brain tumor segmentation, including a 3D recurrent unit and 3D multi-fiber unit. First of all, we propose that recurrent units segment brain tumors by connecting recurrent units and convolutional layers. This quality enhances the model’s ability to integrate contextual information and is of great significance to enhance the contextual information. Then, a 3D multi-fiber unit is added to the overall network to solve the high computational cost caused by the use of a 3D network architecture to capture local features. 3D RMFNet combines both advantages from a 3D recurrent unit and 3D multi-fiber unit. Extensive experiments on the Brain Tumor Segmentation (BraTS) 2018 challenge dataset show that our RMFNet remarkably outperforms state-of-the-art methods, and achieves average Dice scores of 89.62%, 83.65% and 78.72% for the whole tumor, tumor core and enhancing tumor, respectively. The experimental results prove our architecture to be an efficient tool for brain tumor segmentation accurately.

scholarly journals Learning rich features with hybrid loss for brain tumor segmentation

2021 ◽  
Vol 21 (S2) ◽  
Author(s):  
Daobin Huang ◽  
Minghui Wang ◽  
Ling Zhang ◽  
Haichun Li ◽  
Minquan Ye ◽  
...  
Keyword(s):  
Feature Extraction ◽  
Brain Tumor ◽  
Class Imbalance ◽  
Feature Representation ◽  
Loss Functions ◽  
Radiotherapy Planning ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation ◽  
Scale Feature ◽  
Multi Scale

Abstract Background Accurately segment the tumor region of MRI images is important for brain tumor diagnosis and radiotherapy planning. At present, manual segmentation is wildly adopted in clinical and there is a strong need for an automatic and objective system to alleviate the workload of radiologists. Methods We propose a parallel multi-scale feature fusing architecture to generate rich feature representation for accurate brain tumor segmentation. It comprises two parts: (1) Feature Extraction Network (FEN) for brain tumor feature extraction at different levels and (2) Multi-scale Feature Fusing Network (MSFFN) for merge all different scale features in a parallel manner. In addition, we use two hybrid loss functions to optimize the proposed network for the class imbalance issue. Results We validate our method on BRATS 2015, with 0.86, 0.73 and 0.61 in Dice for the three tumor regions (complete, core and enhancing), and the model parameter size is only 6.3 MB. Without any post-processing operations, our method still outperforms published state-of-the-arts methods on the segmentation results of complete tumor regions and obtains competitive performance in another two regions. Conclusions The proposed parallel structure can effectively fuse multi-level features to generate rich feature representation for high-resolution results. Moreover, the hybrid loss functions can alleviate the class imbalance issue and guide the training process. The proposed method can be used in other medical segmentation tasks.

scholarly journals Brain Tumor Segmentation in MRI Images using Convolution Neural Networks

2019 ◽  
Vol 8 (4) ◽  
pp. 2051-2054
Keyword(s):  
Brain Tumor ◽  
Automatic Segmentation ◽  
Important Task ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation ◽  
Brain Images ◽  
Medical Issues ◽  
Current Scenario ◽  
Exact Position ◽  
The Brain

Medical image processing is an important task in current scenario as more and more humans are diagnosed with various medical issues. Brain tumor (BT) is one of the problems that is increasing at a rapid rate and its early detection is important in increasing the survival rate of humans. Detection of tumor from Magnetic Resonance Image (MRI) of brain is very difficult when done manually and also time consuming. Further the tumors assume different shapes and may be present in any portion of the brain. Hence identification of the tumor poses an important task in the lives of human and it is necessary to identify its exact position in the brain and the affected regions. The proposed algorithm makes use of deep learning concepts for automatic segmentation of the tumor from the MRI brain images. The algorithm is implemented using MATLAB and an accuracy of 99.1% is achieved.

The Brain Tumor Segmentation Using Fuzzy C-Means Technique

2018 ◽  
pp. 2402-2419
Author(s):  
Jyotsna Rani ◽  
Ram Kumar ◽  
Fazal A. Talukdar ◽  
Nilanjan Dey
Keyword(s):  
Image Segmentation ◽  
Brain Tumor ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation ◽  
Fuzzy C Means ◽  
Mri Brain ◽  
Area Of Interest ◽  
Fuzzy C Means Clustering ◽  
Comparative Results ◽  
The Brain

Image segmentation is a technique which divides an image into its constituent regions or objects. Segmentation continues till we reach our area of interest or the specified object of target. This field offers vast future scope and challenges for the researchers. This proposal uses the fuzzy c mean technique to segment the different MRI brain tumor images. This proposal also shows the comparative results of Thresholding, K-means clustering and Fuzzy c- means clustering. Dice coefficient and Jaccards measure is used for accuracy of the segmentation in this proposal. Experimental results demonstrate the performance of the designed method.

scholarly journals Multi-Task Learning for Small Brain Tumor Segmentation from MRI

2020 ◽  
Vol 10 (21) ◽  
pp. 7790
Author(s):  
Duc-Ky Ngo ◽  
Minh-Trieu Tran ◽  
Soo-Hyung Kim ◽  
Hyung-Jeong Yang ◽  
Guee-Sang Lee
Keyword(s):  
Brain Tumor ◽  
Early Stage ◽  
Tumor Segmentation ◽  
Great Success ◽  
Brain Tumor Segmentation ◽  
Dilated Convolution ◽  
Task Learning ◽  
Novel Approach ◽  
New Development ◽  
The Brain

Segmenting brain tumors accurately and reliably is an essential part of cancer diagnosis and treatment planning. Brain tumor segmentation of glioma patients is a challenging task because of the wide variety of tumor sizes, shapes, positions, scanning modalities, and scanner’s acquisition protocols. Many convolutional neural network (CNN) based methods have been proposed to solve the problem of brain tumor segmentation and achieved great success. However, most previous studies do not fully take into account multiscale tumors and often fail to segment small tumors, which may have a significant impact on finding early-stage cancers. This paper deals with the brain tumor segmentation of any sizes, but specially focuses on accurately identifying small tumors, thereby increasing the performance of the brain tumor segmentation of overall sizes. Instead of using heavyweight networks with multi-resolution or multiple kernel sizes, we propose a novel approach for better segmentation of small tumors by dilated convolution and multi-task learning. Dilated convolution is used for multiscale feature extraction, however it does not work well with very small tumor segmentation. For dealing with small-sized tumors, we try multi-task learning, where an auxiliary task of feature reconstruction is used to retain the features of small tumors. The experiment shows the effectiveness of segmenting small tumors with the proposed method. This paper contributes to the detection and segmentation of small tumors, which have seldom been considered before and the new development of hierarchical analysis using multi-task learning.

Hybrid active contour model and deep belief network based approach for brain tumor segmentation and classification

Sensor Review ◽  
2019 ◽  
Vol 39 (4) ◽  
pp. 473-487 ◽  
Author(s):  
Ayalapogu Ratna Raju ◽  
Suresh Pabboju ◽  
Ramisetty Rajeswara Rao
Keyword(s):  
Brain Tumor ◽  
Sensitivity And Specificity ◽  
Active Contour ◽  
Active Contour Model ◽  
Tumor Segmentation ◽  
Brain Tumor Segmentation ◽  
Content Type ◽  
Contour Model ◽  
The Brain ◽  
Mri Image

Purpose Brain tumor segmentation and classification is the interesting area for differentiating the tumorous and the non-tumorous cells in the brain and classifies the tumorous cells for identifying its level. The methods developed so far lack the automatic classification, consuming considerable time for the classification. In this work, a novel brain tumor classification approach, namely, harmony cuckoo search-based deep belief network (HCS-DBN) has been proposed. Here, the images present in the database are segmented based on the newly developed hybrid active contour (HAC) segmentation model, which is the integration of the Bayesian fuzzy clustering (BFC) and the active contour model. The proposed HCS-DBN algorithm is trained with the features obtained from the segmented images. Finally, the classifier provides the information about the tumor class in each slice available in the database. Experimentation of the proposed HAC and the HCS-DBN algorithm is done using the MRI image available in the BRATS database, and results are observed. The simulation results prove that the proposed HAC and the HCS-DBN algorithm have an overall better performance with the values of 0.945, 0.9695 and 0.99348 for accuracy, sensitivity and specificity, respectively. Design/methodology/approach The proposed HAC segmentation approach integrates the properties of the AC model and BFC. Initially, the brain image with different modalities is subjected to segmentation with the BFC and AC models. Then, the Laplacian correction is applied to fuse the segmented outputs from each model. Finally, the proposed HAC segmentation provides the error-free segments of the brain tumor regions prevailing in the MRI image. The next step is to extract the useful features, based on scattering transform, wavelet transform and local Gabor binary pattern, from the segmented brain image. Finally, the extracted features from each segment are provided to the DBN for the training, and the HCS algorithm chooses the optimal weights for DBN training. Findings The experimentation of the proposed HAC with the HCS-DBN algorithm is analyzed with the standard BRATS database, and its performance is evaluated based on metrics such as accuracy, sensitivity and specificity. The simulation results of the proposed HAC with the HCS-DBN algorithm are compared against existing works such as k-NN, NN, multi-SVM and multi-SVNN. The results achieved by the proposed HAC with the HCS-DBN algorithm are eventually higher than the existing works with the values of 0.945, 0.9695 and 0.99348 for accuracy, sensitivity and specificity, respectively. Originality/value This work presents the brain tumor segmentation and the classification scheme by introducing the HAC-based segmentation model. The proposed HAC model combines the BFC and the active contour model through a fusion process, using the Laplacian correction probability for segmenting the slices in the database.

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