Molecular profiling of cancer outliers.

2017 ◽  
Vol 35 (15_suppl) ◽  
pp. e13025-e13025 ◽  
Author(s):  
Kyungsuk Jung ◽  
Marijo Bilusic ◽  
Jianming Pei ◽  
Michael Slifker ◽  
Yan Zhou ◽  
...  

e13025 Background: A few patients with metastatic cancer survive exceptionally longer than others under the same treatment. We hypothesized that there is a specific biologic signature in genetic profiles of long-term survivors that plays a key role in sensitivity to systemic treatment. Methods: Twenty-six patients with metastatic cancer treated at Fox Chase cancer center with exceptional response were included in the study. Exceptional response was defined as complete response > 1 year or stable disease/partial response > 2 years at any time during the disease course. Archived tumor specimens of 16 patients were sequenced and analyzed using Ambry Genetics 142 gene panel. In addition, genes expressions in tumor tissues from 23 exceptional responders and 23 matched controls (age, sex and tumor type) were analyzed using two NanoString nCounter PanCancer panels (Pathway and Immune Profiling). Results: See Table. Conclusions: Multiple common mutations of NOTCH2, NF1, FANCD2, PIK3CB and EPHA5 were found in tumors that responded exceptionally well to treatments. Additionally, certain genes were significantly over-expressed or under-expressed in these tumors compared to matched controls. Underlying mechanisms that these genetic alterations foster, leading to susceptibility to treatment and prolonged patient survival, should be further studied. [Table: see text]

2004 ◽  
Vol 22 (4) ◽  
pp. 640-647 ◽  
Author(s):  
Gunar K. Zagars ◽  
Matthew T. Ballo ◽  
Andrew K. Lee ◽  
Sara S. Strom

Purpose To determine the incidence of potentially treatment-related mortality in long-term survivors of testicular seminoma treated by orchiectomy and radiation therapy (XRT). Patients and Methods From all 477 men with stage I or II testicular seminoma treated at The University of Texas M.D. Anderson Cancer Center (Houston, TX) with postorchiectomy megavoltage XRT between 1951 and 1999, 453 never sustained relapse of their disease. Long-term survival for these 453 men was evaluated with the person-years method to determine the standardized mortality ratio (SMR). SMRs were calculated for all causes of death, cardiac deaths, and cancer deaths using standard US data for males. Results After a median follow-up of 13.3 years, the 10-, 20-, 30-, and 40-year actuarial survival rates were 93%, 79%, 59%, and 26%, respectively. The all-cause SMR over the entire observation interval was 1.59 (99% CI, 1.21 to 2.04). The SMR was not excessive for the first 15 years of follow-up: SMR, 1.30 (95% CI, 0.93 to 1.77); but beyond 15 years the SMR was 1.85 (99% CI, 1.30 to 2.55). The overall cardiac-specific SMR was 1.61 (95% CI, 1.21 to 2.24). The cardiac SMR was significantly elevated only beyond 15 years (P < .01). The overall cancer-specific SMR was 1.91 (99% CI, 1.14 to 2.98). The cancer SMR was also significant only after 15 years of follow-up (P < .01). An increased mortality was evident in patients treated with and without mediastinal XRT. Conclusion Long-term survivors of seminoma treated with postorchiectomy XRT are at significant excess risk of death as a result of cardiac disease or second cancer. Management strategies that minimize these risks but maintain the excellent hitherto observed cure rates need to be actively pursued.


1993 ◽  
Vol 11 (3) ◽  
pp. 400-407 ◽  
Author(s):  
H I Scher ◽  
N L Geller ◽  
T Curley ◽  
Y Tao

PURPOSE To evaluate the received dose-intensity in a mature data set of patients with advanced urothelial cancer who received at least one cycle of the methotrexate (M), vinblastine (V), Adriamycin ([A], doxorubicin; Adria Laboratories, Columbus, OH), and cisplatin (C) regimen (M-VAC). PATIENTS AND METHODS Received dose-intensity was evaluated over time by summing doses over cycles for each patient, cumulating treatment times, and assuming four cycles of chemotherapy were planned. Relative cumulative dose-intensity was then calculated for individual patients at the end of each cycle. To assess a relationship with survival, relative cumulative dose-intensity was then used as a time-dependent covariate in Cox regression. RESULTS The median follow-up was 6 years and median survival 13.3 months, with 20 patients alive at the time of analysis. Out of a maximum of 1.0, the median relative dose-intensity for the M-VAC combination decreased from .69 to .59 from cycle 1 to cycle 4. Similarly, a decrease from .68 to .62 and from .80 to .72 was observed for A and C, respectively. The median received dose-intensity for A was 6.0 mg/m2/wk, and for C 14 mg/m2/wk. Neither the four-cycle relative cumulative dose-intensity for the M-VAC combination, nor the relative cumulative dose-intensities for A or C were found to be significant prognostic factors. CONCLUSION The absence of an effect for received dose-intensity on survival may reflect the low dose-intensities of the components of the regimen actually delivered in this study. The results question whether the individual agents can be escalated sufficiently, with growth factor support, to improve significantly complete response proportions, a prerequisite for increasing the proportion of long-term survivors.


Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 1510-1510
Author(s):  
Katerina Pokorna ◽  
Carole Le Pogam ◽  
Martine Chopin ◽  
Bruno Cassinat ◽  
Pierre Fenaux ◽  
...  

Abstract Abstract 1510 Background: Relapses are now relatively rare in APL and occur mainly in the bone marrow (BM) within 3 years of complete response achievement, but later BM relapses can also occur (Kelaidi, Leukemia 2006), while a few cases of extramedullary (EM) relapse are observed, particularly in the central nervous system (CNS) (De Botton, Leukemia 2006). The transplantable transgenic mouse model of APL is a well characterized preclinical model which mimics human APL in its biological characteristics. We have previously reported the response of these mice to ATRA and a combination of ATRA with a DNA vaccine (Padua, Nat Med 2003, Fuguraki, Blood 2010). We analyzed in those treated mice the presence of PML-RARα transcripts in the peripheral blood (PB), BM and various organs and tissues. Methods: The reproducible APL development was obtained, as previously described (Padua Nat Med 2003) by intravenous injection of 104 spleen cells from APL transgenic mice expressing the human PML-RARα cDNA (bcr1) into syngeneic recipients. ATRA and the DNA vaccine (a plasmid containing PML-RARα cDNA (bcr1) sequence fused to the tetanus toxin fragment C) were administered as described (Padua Nat Med 2003). In this model, ATRA alone gives transient remissions, while about 30 % of APL mice treated with ATRA combined with a DNA vaccine achieve long-term remissions. A standardized RT-qPCR MRD monitoring protocol was applied to assess PML-RARα-positive cell clearance in PB and BM. In this assay, the number of PML-RARα transcripts was normalized (normalized copy number or NCN) to 106 copies of 18S rRNA transcripts, allowing us to detect up to 1 PML-RARα-positive cell among 104 negative cells. Taking advantage of the presence of PML-RARα cDNA transgene in the transplanted leukemia cells, we next used genomic DNA as template for a qPCR assay, allowing us to use 10 times more template and increased sensitivity (1 in 105) in order to examine the presence of PML-RARα-positive cells in various organs and tissues of long-term survivors (LTS, ie with survival > 120 days). Results: APL mice treated with ATRA alone (n=55), ATRA combined with PML-RARαFrC DNA (n=94) or untreated (n=65) were analyzed. Untreated APL mice always remained positive in the PB and BM for PML-RARα transcripts, and in organs and tissues positive for PML-RARα cDNA. On day 60, in the surviving ATRA-treated mice (n=21), 15 (71%) had PB PML-RARα normalized copy number (NCN)>100, 6 (29 %) an NCN between 10–100 and none an NCN<10, while in ATRA+DNA-treated mice (n=35), 11 (31%) had NCN>100, 9 (26%) NCN between 10–100 and 15 (43%) NCN<10 (p<0.01). ATRA+DNA-treated mice achieving NCN<10 (43%) constituted the group with the best survival (p<0.0001). To further assess tumour burden, LTS were sacrificed at different time intervals. No PML-RARα transcripts were detected in PB and BM of any LTS (n=15) suggesting complete molecular remission. On the other hand, while PML-RARα cDNA, analyzed by qPCR in skin, salivary glands, thymus, kidney, muscle, heart, spleen, liver, lung and CNS was negative in all tissues in 10 (67%) LTS, it was positive in 5 (33%) LTS, including 4 in the CNS (2 of them were also positive in the spleen) and 1 in the spleen only. Conclusion: In this preclinical model, analyzed with sensitive molecular assays, while two thirds treated long-term survivors were in molecular remission in PB, BM and other organs studied, about one third still had leukemic cells, mainly in the CNS and to a lesser extent in the spleen. This model could be of interest to better understand relapses in APL patients, especially late and CNS relapses and to evaluate drugs aimed at eliminating those reservoirs of residual cells. Disclosures: No relevant conflicts of interest to declare.


2019 ◽  
Vol 37 (15_suppl) ◽  
pp. 11560-11560
Author(s):  
Maria Alma Rodriguez ◽  
Guadalupe R. Palos ◽  
Katherine Ramsey Gilmore ◽  
Paula A. Lewis-Patterson ◽  
Patricia Chapman ◽  
...  

11560 Background: Disease specific Survivorship Care Clinics (SCs) have been established within a comprehensive cancer center. Clinics are staffed by Advanced Practice Providers (APPs), Physician Assistants and Advanced Practice Registered Nurses, with experience in the management of each disease type. To determine the sustainability of this model of survivorship care, we analyzed the professional fees’ revenue generated by APPs’ billings for 6 clinics and then compared the APPs’ salaries across all clinics. Methods: A retrospective analysis was conducted of 6 survivorship clinic’s patient volumes and clinic days supported by APPs from 9/1/16-4/30/17. The full FTE salary of the APPs, including benefits were prorated to the time dedicated to each of the SCs. Institutional financial data was used to align professional fees to actual reimbursements received. Salary recovery percentage was calculated as the ratio of reimbursement received to prorated FTE salary. Results: Table shows variation in APPs’ salary commensurate to FTE proportion. Results also indicate there was an average of 99% professional fee recovery. Clinics with an FTE proportion > 0.5 had recovery higher than the anticipated prorated salary, suggesting there is a threshold to maximize efficacy and sustainability. Conclusions: APPs professional fees for care provided to cancer survivors are reimbursable, across disease types or payers, and proportionally supports their salaries. Our findings suggest delivery models based on APPs to manage care of long-term survivors can be self-supporting.[Table: see text]


Diagnostics ◽  
2019 ◽  
Vol 9 (4) ◽  
pp. 209 ◽  
Author(s):  
Daniele Armocida ◽  
Alessandro Pesce ◽  
Federico Di Giammarco ◽  
Alessandro Frati ◽  
Antonio Santoro ◽  
...  

Background: Glioblastomas (GBM) are generally burdened, to date, by a dismal prognosis, although long term survivors have a relatively significant incidence. Our specific aim was to determine the exact impact of many surgery-, patient- and tumor-related variables on survival parameters. Methods: The surgical, radiological and clinical outcomes of patients have been retrospectively reviewed for the present study. All the patients have been operated on in our institution and classified according their overall survival in long term survivors (LTS) and short term survivors (STS). A thorough review of our surgical series was conducted to compare the oncologic results of the patients in regard to: (1) surgical-(2) molecular and (3) treatment-related features. Results: A total of 177 patients were included in the final cohort. Extensive statistical analysis by means of univariate, multivariate and survival analyses disclosed a survival advantage for patients presenting a younger age, a smaller lesion and a better functional status at presentation. From the histochemical point of view, Ki67 (%) was the strongest predictor of better oncologic outcomes. A stepwise analysis of variance outlines the existence of eight prognostic subgroups according to the molecular patterns of Ki67 overexpression and epidermal growth factor receptor (EGFR), p53 and isocitrate dehydrogenase (IDH) mutations. Conclusions: On the grounds of our statistical analyses we can affirm that the following factors were significant predictors of survival advantage: Karnofsky performance status (KPS), age, volume of the lesion, motor disorder at presentation and/or a Ki67 overexpression. In our experience, LTS is associated with a gross total resection (GTR) of tumor correlated with EGFR and p53 mutations with regardless of localization, and poorly correlated to dimension. We suppose that performing a standard molecular analysis (IDH, EGFR, p53 and Ki67) is not sufficient to predict the behavior of a GBM in regards to overall survival (OS), nor to provide a deeper understanding of the meaning of the different genetic alterations in the DNA of cancer cells. A fine molecular profiling is feasible to precisely stratify the prognosis of GBM patients.


2012 ◽  
Vol 30 (5_suppl) ◽  
pp. 297-297
Author(s):  
Farshid Dayyani ◽  
Mark F. Munsell ◽  
Arlene O. Siefker-Radtke

297 Background: PUC are a rare subset of urothelial cancers with a paucity of available literature regarding their clinical behavior. Methods: Retrospective analysis of outcomes among all patients (pts) with predominant PUC (pPUC) seen at MDACC from 1999-2010. Results: 31 pts with pPUC histology were identified (median age:63.5yrs; 83.3% male; TNM stage:cT1N0,n=4;cT2N0,n=8;cT3b-4aN0,n=6; cT4b, N+ or M+ n = 13). Median survival for all pts was 17.7mo (Stage I-III vs IV: 38.1 vs 13.3mo). Of 18 pts with potentially surgically resectable PUC (<=pT4aN0M0) 7 received neoadjuvant chemotherapy,10 had initial surgery, and one was treated with TURBT alone. Despite pathologic downstaging in 67% of pts treated with neoadjuvant chemotherapy relapses were common and there was no difference in survival between pts treated with neoadjuvant chemotherapy compared to initial surgery, even though adjuvant chemotherapy was given in 7 patients. Only 1 pt in pCR remains in remission >18 mo after surgery. The most common site of recurrence was in the peritoneum (13/18pts), with relapses occurring even in those with pCR at surgery. At least 4 pts developed CNS involvement with lepto-meningeal disease. In pts presenting with metastatic disease who were treated with chemotherapy, the median survival was 12.6 months. Conclusions: Plasmacytoid bladder tumors are a very aggressive subset with overall poor outcomes. Though chemotherapy sensitive with downstaging seen with neoadjuvant chemotherapy, there are few long-term survivors. There is a strong predilection for recurrences along the peritoneal lining, and peritoneal carcinomatosis should remain high on a clinician’s differential when patients develop obstructive bowel symptoms.


2015 ◽  
Vol 33 (7_suppl) ◽  
pp. 504-504 ◽  
Author(s):  
Amishi Yogesh Shah ◽  
Matthew T. Campbell ◽  
Kirtan Das Nautiyal ◽  
Neda Hashemi ◽  
Surena F. Matin ◽  
...  

504 Background: Overall survival (OS) in mRCC has improved with targeted therapy; however, metastasectomy is still an important tool in select patients. This study evaluated outcomes of patients managed with metastasectomy ± systemic therapies. Methods: After IRB approval, we retrospectively reviewed records of mRCC patients who were treated at MDACC between 1/1/2001 and 12/31/2008 and report on those who survived >4 years with metastatic disease. OS was calculated from diagnosis of metastatic disease to death or last follow-up. Descriptive statistics were used. Results: 168 long-term survivors were identified; 101 patients were treated with metastasectomy at some point (total 205 resections). 42 patients had single metastasectomy; 59 had multiple resections (most common in lung and bone). 12 patients underwent serial metastasectomy alone (no systemic therapy), and 8 remain alive (range 4.6-12.9 years from met diagnosis). Conclusions: Patients with mRCC selected for metastasectomy had a significantly longer OS than those who received systemic therapies only. Whether this reflects tumor biology, therapeutic effect, or selection bias is unknown in this retrospective study. However, the prolonged survival in this group supports continued use of metastasectomy in carefully selected patients. [Table: see text] [Table: see text] [Table: see text]


Thyroid ◽  
2016 ◽  
Vol 26 (9) ◽  
pp. 1336-1337 ◽  
Author(s):  
Fabiana Pani ◽  
Francesco Atzori ◽  
Germana Baghino ◽  
Francesco Boi ◽  
Maria Teresa Ionta ◽  
...  

2021 ◽  
Vol 39 (15_suppl) ◽  
pp. 3121-3121
Author(s):  
Li Ma ◽  
Kai Treuner ◽  
Jenna Wong ◽  
David R. Spigel ◽  
Catherine A. Schnabel ◽  
...  

3121 Background: Unless tumor type and genetic alterations can be identified, metastatic cancer patients with unknown or uncertain diagnoses may be limited to empiric chemotherapy. The 92-gene assay (CancerTYPE ID) is a validated gene expression classifier of 50 tumor types and subtypes for patients with cancer of unknown primary (CUP) or ambiguous diagnoses. Multimodal molecular biomarker testing by next-generation sequencing (NGS), tumor mutational burden (TMB), fluorescent in situ hybridization (FISH), microsatellite instability (MSI), and immunohistochemistry (IHC) can identify genetic targets. A database integrating tumor typing with biomarker analysis in metastatic cases was utilized to identify the most prevalent genetic alterations by tumor type. Methods: MOSAIC (Molecular Synergy to Advance Individualized Cancer Care) is an IRB-approved database of cases with CancerTYPE ID testing plus multimodal biomarker testing. The current study determined molecular tumor type followed by molecular profiling by NGS for up to 323 genes, (NeoTYPE profiles, Neogenomics). Results: Tumor type was determined in 1992 of 2151 cases (92.7%), comprised of 27 different tumor types. 72% of cases were comprised of the 7 tumor types shown in the table,which also shows the frequency of the 10 most commonly mutated genes by tumor type. Bolded are genes with actionable genetic mutations for which FDA-approved therapies are not currently indicated in the identified tumor type. Conclusions: Precise targeted treatment for many patients with CUP or ambiguous diagnoses requires accurate diagnosis of the cancer origin combined with multimodal molecular testing to identify actionable genetic alterations in the appropriate cellular context. Future studies will evaluate additional biomarker profiles, including TMB, FISH, MSI, and IHC for cases in the MOSAIC database.[Table: see text]


2018 ◽  
Vol 21 (2) ◽  
pp. 323-334 ◽  
Author(s):  
Michele Masetti ◽  
Giorgia Acquaviva ◽  
Michela Visani ◽  
Giovanni Tallini ◽  
Adele Fornelli ◽  
...  

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