scholarly journals Migration of small ligands in globins: Xe diffusion in truncated hemoglobin N

2017 ◽  
Vol 13 (3) ◽  
pp. e1005450 ◽  
Author(s):  
Polydefkis Diamantis ◽  
Oliver T. Unke ◽  
Markus Meuwly
2016 ◽  
Vol 17 (13) ◽  
pp. 1455-1470 ◽  
Author(s):  
Tomas Majtan ◽  
Angel L. Pey ◽  
June Ereño-Orbea ◽  
Luis Alfonso Martínez-Cruz ◽  
Jan P. Kraus

2014 ◽  
Vol 53 (27) ◽  
pp. 6942-6945 ◽  
Author(s):  
Guillaume Durand ◽  
Samuele Lisi ◽  
Corinne Ravelet ◽  
Eric Dausse ◽  
Eric Peyrin ◽  
...  
Keyword(s):  

2007 ◽  
Vol 189 (8) ◽  
pp. 3063-3071 ◽  
Author(s):  
Annika Rogstam ◽  
Jonas T. Larsson ◽  
Peter Kjelgaard ◽  
Claes von Wachenfeldt

ABSTRACT Bacteria use a number of mechanisms for coping with the toxic effects exerted by nitric oxide (NO) and its derivatives. Here we show that the flavohemoglobin encoded by the hmp gene has a vital role in an adaptive response to protect the soil bacterium Bacillus subtilis from nitrosative stress. We further show that nitrosative stress induced by the nitrosonium cation donor sodium nitroprusside (SNP) leads to deactivation of the transcriptional repressor NsrR, resulting in derepression of hmp. Nitrosative stress induces the sigma B-controlled general stress regulon. However, a sigB null mutant did not show increased sensitivity to SNP, suggesting that the sigma B-dependent stress proteins are involved in a nonspecific protection against stress whereas the Hmp flavohemoglobin plays a central role in detoxification. Mutations in the yjbIH operon, which encodes a truncated hemoglobin (YjbI) and a predicted 34-kDa cytosolic protein of unknown function (YjbH), rendered B. subtilis hypersensitive to SNP, suggesting roles in nitrosative stress management.


2007 ◽  
Vol 282 (18) ◽  
pp. 13627-13636 ◽  
Author(s):  
Changyuan Lu ◽  
Tsuyoshi Egawa ◽  
Laura M. Wainwright ◽  
Robert K. Poole ◽  
Syun-Ru Yeh

2003 ◽  
Vol 3 (1) ◽  
pp. 131-132 ◽  
Author(s):  
A. Kobori ◽  
H. Suda ◽  
K. Nakatani ◽  
I. Saito

2016 ◽  
Vol 94 (8) ◽  
pp. 680-686
Author(s):  
Huiqing Li ◽  
Jing Wei ◽  
Youming Dong ◽  
Zhiyue Yu

The major bovine milk protein β-lactoglobulin (β-LG), a member of the lipocalin superfamily, can bind a wide range of ligands and act as a transporter. In the present study, the combination of the hydrophobic molecule 2-(p-toluidino)-6-naphthalenesulfonic acid sodium salt (TNS) with β-LG was analyzed using fluorescence spectroscopy and AutoDock modeling to discern the major binding sites of the protein and to determine the capacity of other small ligands to bind with β-LG by utilizing TNS as a reference. The experimental data indicate that in a neutral pH environment, TNS is located in the hydrophobic domain of the protein, 2.5 nm away from the Trp19 residues of β-LG. The binding constant of the small molecule to β-LG is (3.30 ± 0.32) × 106 (mol L–1)−1. An interaction model between the ligand and β-LG was developed, and AutoDock modeling also demonstrates that the ligand is located in the central hydrophobic calyx of β-LG within the regions covered by the Förster radius of the Trp19–ligand pair. Although the interaction between the ligand and β-LG is affected by increasing ion strength, pH change, and heat treatment, the complex is maintained until the secondary structure of β-LG is destroyed. Additionally, the ligand binding stabilizes the folding of β-LG. The binding constants of sodium dodecyl sulfate (SDS) and sodium dodecylbenzene sulfonate (SDBS) to β-LG were obtained using competitive ligand binding measurements. With a sensitive fluorescence signal and stable complex, the ligand could be utilized as a reference to detect the binding of other small ligands to β-LG.


2014 ◽  
Vol 589 (1) ◽  
pp. 242-250 ◽  
Author(s):  
V. Gumenyuk ◽  
S. Kutovyy ◽  
T. Sych ◽  
R. Savchuk ◽  
N. Bashmakova
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