scholarly journals High-throughput sequencing analysis of microbial community diversity in response to indica and japonica bar-transgenic rice paddy soils

PLoS ONE ◽  
2019 ◽  
Vol 14 (9) ◽  
pp. e0222191 ◽  
Author(s):  
Meidan He ◽  
Jiachao Zhang ◽  
Linbo Shen ◽  
Lixin Xu ◽  
Wenjie Luo ◽  
...  
Keyword(s):  
Microbial Community ◽  
Transgenic Rice ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Rice Paddy ◽  
Paddy Soils ◽  
Community Diversity ◽  
Sequencing Analysis ◽  
Microbial Community Diversity ◽  
Rice Paddy Soils

scholarly journals High-Throughput Sequencing of Microbial Community Diversity and Dynamics during Douchi Fermentation

PLoS ONE ◽  
2016 ◽  
Vol 11 (12) ◽  
pp. e0168166 ◽  
Author(s):  
Lin Yang ◽  
Hui-lin Yang ◽  
Zong-cai Tu ◽  
Xiao-lan Wang
Keyword(s):  
Microbial Community ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Community Diversity ◽  
Microbial Community Diversity

scholarly journals High-throughput sequencing of microbial community diversity in soil, grapes, leaves, grape juice and wine of grapevine from China

PLoS ONE ◽  
2018 ◽  
Vol 13 (3) ◽  
pp. e0193097 ◽  
Author(s):  
Yu-jie Wei ◽  
Yun Wu ◽  
Yin-zhuo Yan ◽  
Wan Zou ◽  
Jie Xue ◽  
...  
Keyword(s):  
Microbial Community ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Grape Juice ◽  
Community Diversity ◽  
Microbial Community Diversity

High-throughput sequencing reveals microbial community diversity of Tibetan naturally fermented yak milk

2015 ◽  
Vol 65 (3) ◽  
pp. 1741-1751 ◽  
Author(s):  
Wenjun Liu ◽  
Xiaoxia Xi ◽  
Qimuge Sudu ◽  
Laiyu Kwok ◽  
Zhuang Guo ◽  
...  
Keyword(s):  
Microbial Community ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Community Diversity ◽  
Microbial Community Diversity ◽  
Yak Milk

scholarly journals Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China

2018 ◽  
Vol 20 (4) ◽  
pp. 673-685 ◽  
Author(s):  
Tatiana A. Vishnivetskaya ◽  
Haiyan Hu ◽  
Joy D. Van Nostrand ◽  
Ann M. Wymore ◽  
Xiaohang Xu ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Gene Diversity ◽  
Rice Paddy ◽  
Paddy Soils ◽  
Rice Paddies ◽  
Sulfate Reducing ◽  
Rice Paddy Soils ◽  
Reducing Bacteria

Sulfate-reducing bacteria and methanogens are the primary Hg-methylators in Chinese rice paddies.

Analysis of microbial changes in the rhizosphere of unplanted and planted Atractylodes lancea via high-throughput sequencing

2020 ◽  
Author(s):  
Yan Xu ◽  
Junfeng Niu ◽  
Lijun Chen ◽  
Xiaoqiang Wu ◽  
Zhongmin Dong ◽  
...  
Keyword(s):  
Microbial Community ◽  
High Throughput ◽  
Relative Abundance ◽  
High Throughput Sequencing ◽  
Community Diversity ◽  
Continuous Cropping ◽  
Pests And Diseases ◽  
Atractylodes Lancea ◽  
Bacteria And Fungi ◽  
The Relationship

Abstract Background Atractylodes lancea is a traditional Chinese medicine, which typically requires more than 3–4 years of continuous cropping to obtain the underground medicinal components. With continuous cropping years, the quality and yields of A. lancea medicinal materials decrease, while pests and diseases increase. These aspects are intimately correlated with rhizospheric microorganisms. Methods This research paper employed high-throughput sequencing for its detection in soil that was cultivated for three years and never cultivated to clarify the relationship between the microbial diversity of the rhizosphere and continuous A. lancea cropping. Results The rhizosphere microbial community was altered following the continuous cropping of A. lancea. The bacterial diversity and richness were observed to decrease, while the fungal community diversity increased, and richness decreased. The total OUTs of the soil bacteria and fungi of unplanted and planted A. lancea were 59.58% and 37.65%, respectively. At the phylum level, the relative abundance of Proteobacteria, Gemmatimonadetes, Acidobacteria and Chloroflexi decreased, whereas the relative abundance of Mortierellomycota increased. At the genus level, Bradyrhizobium, Striaticonidium, Dactylonectria, Sphingomonas, Burkholderiaceae, Rhodanobacter, Arthrobacter, Scleroderma, Mortierella and Penicillium were significantly different between the two sample groups. Conclusions Our results revealed that following the cultivation of A. lancea, the rhizospheric microbial community was altered. This study preliminarily determined the

scholarly journals High-throughput sequencing analysis of the microbial community in coastal intensive mariculture systems

2018 ◽  
Vol 83 ◽  
pp. 93-102 ◽  
Author(s):  
Jian-Hua Wang ◽  
Jian Lu ◽  
Yu-Xuan Zhang ◽  
Jun Wu ◽  
Cui Zhang ◽  
...  
Keyword(s):  
Microbial Community ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Sequencing Analysis

scholarly journals PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data

2011 ◽  
Vol 7 (1) ◽  
pp. e1001061 ◽  
Author(s):  
Thomas J. Sharpton ◽  
Samantha J. Riesenfeld ◽  
Steven W. Kembel ◽  
Joshua Ladau ◽  
James P. O'Dwyer ◽  
...  
Keyword(s):  
Microbial Community ◽  
High Throughput ◽  
Community Diversity ◽  
Metagenomic Data ◽  
Microbial Community Diversity ◽  
Novel Taxa

scholarly journals Effects of Andrographolide on Mouse Intestinal Microflora Based on High-Throughput Sequence Analysis

2021 ◽  
Vol 8 ◽  
Author(s):  
Haigang Wu ◽  
Xian Wu ◽  
Li Huang ◽  
Chongmei Ruan ◽  
Jinni Liu ◽  
...  
Keyword(s):  
Microbial Community ◽  
Gut Microbiota ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Bacterial Resistance ◽  
Microbial Community Composition ◽  
Intestinal Flora ◽  
Sequencing Analysis ◽  
Beneficial Bacteria ◽  
Intestinal Microbes

The intestinal flora is a micro-ecosystem that is closely linked to the overall health of the host. We examined the diversity and abundance of intestinal microorganisms in mice following the administration of andrographolide, a component of the Chinese medical herb Andrographis paniculata. Administration of andrographolide produces multiple beneficial effects including anti-inflammatory, antiviral and antibacterial effects but whether it directly influences the gut microbiota is not known. This study investigated whether the oral administration of andrographolide influences the intestinal microbiota and was compared with amoxicillin treatment as a positive control and water only as a negative control. We examined 21 cecal samples and conducted a high-throughput sequencing analysis based on V3-V4 variable region of the 16S rDNA genes. We found that the diversity and abundance of mouse gut microbiota decreased in direct proportion with the amoxicillin dose whereas andrographolide administration did not affect intestinal microbial community structure. The composition of intestinal microbes following andrographolide treatment was dominated by the Firmicutes while Bacteroidetes dominated the amoxicillin treatment group compared with the negative controls. Specifically, the f__Lachnospiraceae_ Unclassified, Lachnospiraceae_ NK4A136_group and Ruminococcaceae_ UCG-014 were enriched with andrographolide administration while Bacteroides, Klebsiella and Escherichia-Shigella significantly increased in the amoxicillin test groups. Amoxicillin administration altered the microbial community composition and structure by increasing the proportion of pathogenic to beneficial bacteria whereas andrographolide administration led to increases in the proportions and abundance of beneficial bacteria. This study provides a theoretical basis for finding alternatives to antibiotics to decrease bacterial resistance and restore intestinal floral imbalances.

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