scholarly journals On the sensitivity of plankton ecosystem models to the formulation of zooplankton grazing

PLoS ONE ◽  
2021 ◽  
Vol 16 (5) ◽  
pp. e0252033
Author(s):  
Fanny Chenillat ◽  
Pascal Rivière ◽  
Mark D. Ohman

Model representations of plankton structure and dynamics have consequences for a broad spectrum of ocean processes. Here we focus on the representation of zooplankton and their grazing dynamics in such models. It remains unclear whether phytoplankton community composition, growth rates, and spatial patterns in plankton ecosystem models are especially sensitive to the specific means of representing zooplankton grazing. We conduct a series of numerical experiments that explicitly address this question. We focus our study on the form of the functional response to changes in prey density, including the formulation of a grazing refuge. We use a contemporary biogeochemical model based on continuum size-structured organization, including phytoplankton diversity, coupled to a physical model of the California Current System. This region is of particular interest because it exhibits strong spatial gradients. We find that small changes in grazing refuge formulation across a range of plausible functional forms drive fundamental differences in spatial patterns of plankton concentrations, species richness, pathways of grazing fluxes, and underlying seasonal cycles. An explicit grazing refuge, with refuge prey concentration dependent on grazers’ body size, using allometric scaling, is likely to provide more coherent plankton ecosystem dynamics compared to classic formulations or size-independent threshold refugia. We recommend that future plankton ecosystem models pay particular attention to the grazing formulation and implement a threshold refuge incorporating size-dependence, and we call for a new suite of experimental grazing studies.

2015 ◽  
Vol 138 ◽  
pp. 546-558 ◽  
Author(s):  
Kaustubha Raghukumar ◽  
Christopher A. Edwards ◽  
Nicole L. Goebel ◽  
Gregoire Broquet ◽  
Milena Veneziani ◽  
...  

2019 ◽  
Vol 12 (1) ◽  
pp. 441-456 ◽  
Author(s):  
Carlos Rocha ◽  
Christopher A. Edwards ◽  
Moninya Roughan ◽  
Paulina Cetina-Heredia ◽  
Colette Kerry

Abstract. Understanding phytoplankton dynamics is critical across a range of topics, spanning from fishery management to climate change mitigation. It is particularly interesting in the East Australian Current (EAC) system, as the region's eddy field strongly conditions nutrient availability and therefore phytoplankton growth. Numerical models provide unparalleled insight into these biogeochemical dynamics. Yet, to date, modelling efforts off southeastern Australia have either targeted case studies (small spatial and temporal scales) or encompassed the whole EAC system but focused on climate change effects at the mesoscale (with a spatial resolution of 1/10∘). Here we couple a model of the pelagic nitrogen cycle (bio_Fennel) to a 10-year high-resolution (2.5–5 km horizontal) three-dimensional ocean model (ROMS) to resolve both regional and finer-scale biogeochemical processes occurring in the EAC system. We use several statistical metrics to compare the simulated surface chlorophyll to an ocean colour dataset (Copernicus-GlobColour) for the 2003–2011 period and show that the model can reproduce the observed phytoplankton surface patterns with a domain-wide RMSE of approximately 0.2 mg Chl a m−3 and a correlation coefficient of 0.76. This coupled configuration will provide a much-needed framework to examine phytoplankton variability in the EAC system providing insight into important ecosystem dynamics such as regional nutrient supply mechanisms and biogeochemical cycling occurring in EAC eddies.


2006 ◽  
Vol 53 (9) ◽  
pp. 1483-1516 ◽  
Author(s):  
Nicolas Gruber ◽  
Hartmut Frenzel ◽  
Scott C. Doney ◽  
Patrick Marchesiello ◽  
James C. McWilliams ◽  
...  

2020 ◽  
Vol 637 ◽  
pp. 29-43 ◽  
Author(s):  
A Barth ◽  
RK Walter ◽  
I Robbins ◽  
A Pasulka

Variations in the abundance and composition of phytoplankton greatly impact ecosystem structure and function. Within the California Current System (CCS), phytoplankton community structure is tightly coupled to seasonal variability in wind-driven coastal upwelling, a process that drives changes in coastal water temperatures and nutrient concentrations. Based on approximately a decade (2008-2018) of weekly phytoplankton measurements, this study provides the first characterization of the seasonal and interannual variability of phytoplankton abundance and composition in San Luis Obispo (SLO) Bay, an understudied region within the CCS. Overall, the seasonality of phytoplankton in SLO Bay mirrored that of the larger CCS; diatoms dominated the community during the spring upwelling season, whereas dinoflagellates dominated the community during the fall relaxation period. While we observed considerable interannual variability among phytoplankton taxa, of particular note was the absence of a fall dinoflagellate-dominated period from 2010 through 2013, followed by the return of the fall dinoflagellate-dominated period in 2014. This compositional shift coincided with a major phase shift of both the Pacific Decadal Oscillation (PDO) and North Pacific Gyre Oscillation (NPGO). In addition to exerting a strong influence on the seasonality of phytoplankton community succession and transition between diatom- and dinoflagellate-dominated periods, the state of both the PDO and NPGO also influenced the extent to which environmental conditions (temperature and upwelling winds) could predict community type. These results highlight the importance of long-term datasets and the consideration of large-scale climate patterns when assessing local ecosystem dynamics.


2002 ◽  
Vol 30 (1) ◽  
Author(s):  
Patrick Marchesiello ◽  
James C McWilliams ◽  
Keith Stolzenbach ◽  
Nicolas Gruber

2021 ◽  
Vol 8 ◽  
Author(s):  
Mercedes Pozo Buil ◽  
Michael G. Jacox ◽  
Jerome Fiechter ◽  
Michael A. Alexander ◽  
Steven J. Bograd ◽  
...  

Given the ecological and economic importance of eastern boundary upwelling systems like the California Current System (CCS), their evolution under climate change is of considerable interest for resource management. However, the spatial resolution of global earth system models (ESMs) is typically too coarse to properly resolve coastal winds and upwelling dynamics that are key to structuring these ecosystems. Here we use a high-resolution (0.1°) regional ocean circulation model coupled with a biogeochemical model to dynamically downscale ESMs and produce climate projections for the CCS under the high emission scenario, Representative Concentration Pathway 8.5. To capture model uncertainty in the projections, we downscale three ESMs: GFDL-ESM2M, HadGEM2-ES, and IPSL-CM5A-MR, which span the CMIP5 range for future changes in both the mean and variance of physical and biogeochemical CCS properties. The forcing of the regional ocean model is constructed with a “time-varying delta” method, which removes the mean bias of the ESM forcing and resolves the full transient ocean response from 1980 to 2100. We found that all models agree in the direction of the future change in offshore waters: an intensification of upwelling favorable winds in the northern CCS, an overall surface warming, and an enrichment of nitrate and corresponding decrease in dissolved oxygen below the surface mixed layer. However, differences in projections of these properties arise in the coastal region, producing different responses of the future biogeochemical variables. Two of the models display an increase of surface chlorophyll in the northern CCS, consistent with a combination of higher nitrate content in source waters and an intensification of upwelling favorable winds. All three models display a decrease of chlorophyll in the southern CCS, which appears to be driven by decreased upwelling favorable winds and enhanced stratification, and, for the HadGEM2-ES forced run, decreased nitrate content in upwelling source waters in nearshore regions. While trends in the downscaled models reflect those in the ESMs that force them, the ESM and downscaled solutions differ more for biogeochemical than for physical variables.


Author(s):  
Lionel Renault ◽  
James C. McWilliams ◽  
Alexandre Jousse ◽  
Curtis Deutsch ◽  
Hartmut Frenzel ◽  
...  

AbstractThis paper is the first of two that present a 16-year reanalysis solution from a coupled physical and biogeochemical model of the California Current System (CCS) along the U. S. West Coast and validate the solution with respect to mean and seasonal fields and, to a lesser degree, eddy variability. Its companion paper is Deutsch et al. (2019a). The intent is to construct and demonstrate a modeling tool that will be used for mechanistic explanations, attributive causal assessments, and forecasts of future evolution for circulation and biogeochemistry, with particular attention to the increasing oceanic stratification, deoxygenation, and acidification. A well-resolved mesoscale (dx = 4 km) simulation of the CCS circulation is made with the Regional Oceanic Modeling System over a reanalysis period of 16 years from 1995 to 2010. The oceanic solution is forced by a high-resolution (dx = 6 km) regional configuration of the Weather and Research Forecast (WRF) atmospheric model. Both of these high-resolution regional oceanic and atmospheric simulations are forced by lateral open boundary conditions taken from larger-domain, coarser-resolution parent simulations that themselves have boundary conditions from the Mercator and Climate Forecast System reanalyses, respectively. We first show good agreement between the simulated atmospheric forcing of the ocean and satellite observations for the spatial patterns and seasonal variability of the cloud cover and for the surface fluxes of momentum, heat, and freshwater. The simulated oceanic physical fields are then evaluated with satellite and in situ observations. The simulation reproduces the main structure of the climatological upwelling front and cross-shore isopycnal slopes, the mean current patterns (including the California Undercurrent), and the seasonal and interannual variability. It also shows agreement between the mesoscale eddy activity and the wind-work energy exchange between the ocean and atmosphere modulated by influences of surface current on surface stress. Finally, the impact of using a high frequency wind forcing is assessed for the importance of synoptic wind variability to realistically represent oceanic mesoscale activity and ageostrophic inertial currents.


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