scholarly journals BBX32 Interacts with AGL24 Involved in Flowering Time Control in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)

2018 ◽  
Vol 47 (1) ◽  
pp. 34-45
Author(s):  
Guan-Peng MA ◽  
Da-Qin ZHAO ◽  
Tian-Wen WANG ◽  
Lin-Bi ZHOU ◽  
Gui-Lian LI
Keyword(s):  
Arabidopsis Thaliana ◽  
Circadian Clock ◽  
Flowering Time ◽  
Brassica Rapa ◽  
Chinese Cabbage ◽  
Protein Interactions ◽  
Protein Protein Interactions ◽  
Time Control ◽  
Flowering Time Control ◽  
Molecular Regulatory Mechanisms

B-box (BBX) zinc finger proteins play critical roles in both vegetative and reproductive development in plants. Many BBX proteins have been identified in Arabidopsis thaliana as floral transition regulatory factors, such as CO, BBX7 (COL9), BBX19, and BBX32. BBX32 is involved in flowering time control through repression of COL3 in Arabidopsis thaliana, but it is still elusive that whether and how BBX32 directly interacts with flowering signal integrators of AGAMOUS-LIKE 24 (AGL24) and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1) in Chinese cabbage (Brassica rapa L. ssp. pekinensis) or other plants. In this study, B-box-32(BBX32), a transcription factor in this family with one B-box motif was cloned from B. rapa, acted as a circadian clock protein, showing expression changes during the circadian period. Additional experiments using GST pull-down and yeast two-hybrid assays indicated that BrBBX32 interacts with BrAGL24 and does not interact with BrSOC1, while BrAGL24 does interact with BrSOC1. To investigate the domains involved in these protein-protein interactions, we tested three regions of BrBBX32. Only the N-terminus interacted with BrAGL24, indicating that the B-box domain may be the key region for protein interaction. Based on these data, we propose that BrBBX32 may act in the circadian clock pathway and relate to the mechanism of flowering time regulation by binding to BrAGL24 through the B-box domain. This study will provide valuable information for unraveling the molecular regulatory mechanisms of BrBBX32 in flowering time of B. rapa.

scholarly journals Natural variation in CIRCADIAN CLOCK ASSOCIATED 1 is associated with flowering time in Brassica rapa

Genome ◽  
2017 ◽  
Vol 60 (5) ◽  
pp. 402-413 ◽  
Author(s):  
Hankuil Yi ◽  
Xiaonan Li ◽  
Seong Ho Lee ◽  
Ill-Sup Nou ◽  
Yong Pyo Lim ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Circadian Clock ◽  
Flowering Time ◽  
Brassica Rapa ◽  
Inbred Lines ◽  
Crop Breeding ◽  
Time Control ◽  
Brassica Crop ◽  
Flowering Time Control ◽  
High Level

Flowering time is a very important agronomic trait and the development of molecular markers associated with this trait can facilitate crop breeding. CIRCADIAN CLOCK ASSOCIATED 1 (CCA1), a core oscillator component of circadian rhythms that affect metabolic pathways in plants, has been implicated in flowering time control in species of Brassica. CCA1 gene sequences from three Brassica rapa inbred lines, showing either early flowering or late flowering phenotypes, were analyzed and a high level of sequence variation was identified, especially within the fourth intron. Using this information, three PCR primer sets were designed and tested using various inbred lines of B. rapa. The usage of InDel markers was further validated by evaluation of flowering time and high resolution melting (HRM) analysis. Both methods, PCR and HRM, validated the use of newly developed markers. Additional sequence analyses of Brassica plants with diploid (AA, BB, or CC) and allotetraploid genomes further confirmed a large number of sequence polymorphisms in the CCA1 gene, including insertions/deletions in the fourth intron. Our results demonstrated that sequence variations in CCA1 can be used to develop valuable trait-related molecular markers for Brassica crop breeding.

scholarly journals Translating Flowering Time From Arabidopsis thaliana to Brassicaceae and Asteraceae Crop Species

Plants ◽  
2018 ◽  
Vol 7 (4) ◽  
pp. 111 ◽  
Author(s):  
Willeke Leijten ◽  
Ronald Koes ◽  
Ilja Roobeek ◽  
Giovanna Frugis
Keyword(s):  
Arabidopsis Thaliana ◽  
Flowering Time ◽  
Genetic Network ◽  
Day Length ◽  
High Yield ◽  
Optimal Time ◽  
Vegetable Crops ◽  
Crop Species ◽  
Time Control ◽  
Flowering Time Control

Flowering and seed set are essential for plant species to survive, hence plants need to adapt to highly variable environments to flower in the most favorable conditions. Endogenous cues such as plant age and hormones coordinate with the environmental cues like temperature and day length to determine optimal time for the transition from vegetative to reproductive growth. In a breeding context, controlling flowering time would help to speed up the production of new hybrids and produce high yield throughout the year. The flowering time genetic network is extensively studied in the plant model species Arabidopsis thaliana, however this knowledge is still limited in most crops. This article reviews evidence of conservation and divergence of flowering time regulation in A. thaliana with its related crop species in the Brassicaceae and with more distant vegetable crops within the Asteraceae family. Despite the overall conservation of most flowering time pathways in these families, many genes controlling this trait remain elusive, and the function of most Arabidopsis homologs in these crops are yet to be determined. However, the knowledge gathered so far in both model and crop species can be already exploited in vegetable crop breeding for flowering time control.

New Nucleotide Polymorphisms in the BTC1 gene of Sugar Beet

2020 ◽  
Vol 36 (6) ◽  
pp. 49-54
Author(s):  
A.A. Nalbandyan ◽  
T.P. Fedulova ◽  
I.V. Cherepukhina ◽  
T.I. Kryukova ◽  
N.R. Mikheeva ◽  
...  
Keyword(s):  
Sugar Beet ◽  
Flowering Time ◽  
Molecular Genetic ◽  
Bioinformatic Analysis ◽  
Early Flowering ◽  
Nucleotide Polymorphisms ◽  
Nucleotide Substitutions ◽  
Time Control ◽  
Flowering Time Control ◽  
Exon 10

The flowering time control gene of various sugar beet plants has been studied. The BTC1 gene is a regulator for the suppressor (flowering time 1) and inducer (flowering time 2) genes of this physiological process. The F9/R9 primer pair was used for polymerase chain reaction; these primers are specific to the BTC1 gene region containing exon 9, as well as intron and exon 10. For the first time, nucleotide substitutions in exon 10 of BTC1 gene were identified in bolting sensitive samples (HF1 and BF1), which led to a change in the amino acid composition of the coded polypeptide chain. Based on the results of bioinformatic analysis, it can be assumed that certain nucleotide polymorphisms in the BTC1 gene may determine with a high probability the predisposition of sugar beet genotypes to early flowering. The use of the Geneious Prime tool for the analysis of the BTC1 gene sequences may allow the culling of genotypes prone to early flowering at early stages of selection. sugar beet, flowering gene, BTC1, genetic polymorphism, PCR, molecular genetic markers, selection

scholarly journals Message ends: RNA 3′ processing and flowering time control

2013 ◽  
Vol 65 (2) ◽  
pp. 353-363 ◽  
Author(s):  
Katarzyna Rataj ◽  
Gordon G. Simpson
Keyword(s):  
Flowering Time ◽  
Time Control ◽  
Flowering Time Control

Repeated rearrangement of the GSL‐AOP locus contributed to spatio‐temporal variation in defense chemistry in Arabidopsis

2020 ◽  
Author(s):  
Konrad Weber ◽  
Lucasz Krych ◽  
Meike Burow
Keyword(s):  
Flowering Time ◽  
Regulatory Networks ◽  
Structural Diversity ◽  
Sequence Information ◽  
Sequencing Data ◽  
Defense Compounds ◽  
Caucasus Region ◽  
Time Control ◽  
Spatio Temporal ◽  
Flowering Time Control

Abstract Plants coordinate metabolic and developmental processes with the help of genetically variable, interconnected regulatory networks. The GSL-AOP locus in Arabidopsis thaliana encodes enzymes involved in the biosynthesis of glucosinolate defense compounds and has been attributed regulatory functions e.g. in flowering time control. To correlate genetic and phenotypic variation linked to GSL-AOP, we conducted a phylogenetic analysis across 1135 accessions and found that the available short-read sequencing data does not fully resolve the structural diversity in the locus. We analyzed a selection of 74 accessions for glucosinolate profiles and flowering time under different conditions and acquired long-read sequence information for glucosinolate and flowering time loci. Especially in the Caucasus region, structural variation in GSL-AOP was associated with conditional, tissue-specific glucosinolate profiles. Variation in FLC among the Caucasian accessions correlated with variation in the flowering time response to vernalization, suggesting that local adaptation has shaped defense and development in an orchestrated manner.

scholarly journals Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

BMC Genomics ◽  
2009 ◽  
Vol 10 (1) ◽  
pp. 288 ◽  
Author(s):  
Stefanie De Bodt ◽  
Sebastian Proost ◽  
Klaas Vandepoele ◽  
Pierre Rouzé ◽  
Yves Van de Peer
Keyword(s):  
Arabidopsis Thaliana ◽  
Gene Ontology ◽  
Protein Interactions ◽  
Protein Protein Interactions

Flowering time control in rice by introducing Arabidopsis clock-associated PSEUDO-RESPONSE REGULATOR 5

2020 ◽  
Vol 84 (5) ◽  
pp. 970-979 ◽  
Author(s):  
Norihito Nakamichi ◽  
Toru Kudo ◽  
Nobue Makita ◽  
Takatoshi Kiba ◽  
Toshinori Kinoshita ◽  
...  
Keyword(s):  
Flowering Time ◽  
Response Regulator ◽  
Time Control ◽  
Pseudo Response Regulator ◽  
Flowering Time Control

Flowering time control: gene network modelling and the link to quantitative genetics

2005 ◽  
Vol 56 (9) ◽  
pp. 919 ◽  
Author(s):  
Stephen M. Welch ◽  
Zhanshan Dong ◽  
Judith L. Roe ◽  
Sanjoy Das
Keyword(s):  
Flowering Time ◽  
Quantitative Genetics ◽  
Model Development ◽  
Genetic Network ◽  
Ideal Theory ◽  
Emergent Properties ◽  
Network Modelling ◽  
Crop Models ◽  
Time Control ◽  
Flowering Time Control

Flowering is a key stage in plant development that initiates grain production and is vulnerable to stress. The genes controlling flowering time in the model plant Arabidopsis thaliana are reviewed. Interactions between these genes have been described previously by qualitative network diagrams. We mathematically relate environmentally dependent transcription, RNA processing, translation, and protein–protein interaction rates to resultant phenotypes. We have developed models (reported elsewhere) based on these concepts that simulate flowering times for novel A. thaliana genotype–environment combinations. Here we draw 12 contrasts between genetic network (GN) models of this type and quantitative genetics (QG), showing that both have equal contributions to make to an ideal theory. Physiological dominance and additivity are examined as emergent properties in the context of feed-forwards networks, an instance of which is the signal-integration portion of the A. thaliana flowering time network. Additivity is seen to be a complex, multi-gene property with contributions from mass balance in transcript production, the feed-forwards structure itself, and downstream promoter reaction thermodynamics. Higher level emergent properties are exemplified by critical short daylength (CSDL), which we relate to gene expression dynamics in rice (Oryza sativa). Next to be discussed are synergies between QG and GN relating to the quantitative trait locus (QTL) mapping of model coefficients. This suggests a new verification test useful in GN model development and in identifying needed updates to existing crop models. Finally, the utility of simple models is evinced by 80 years of QG theory and mathematical ecology.

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