Species richness and diversity in shrub savanna using ordinary kriging

Abstract: The objective of this work was to analyze the spatial distribution and the behavior of species richness and diversity in a shrub savanna fragment, in 2003 and 2014, using ordinary kriging, in the state of Minas Gerais, Brazil. In both evaluation years, the measurements were performed in a fragment with 236.85 hectares, in which individual trees were measured and identified across 40 plots (1,000 m2). Species richness was determined by the total number of species in each plot, and diversity by the Shannon diversity index. For the variogram study, spatial models were fitted and selected. Then, ordinary kriging was applied and the spatial distribution of the assessed variables was described. A strong spatial dependence was observed between species richness and diversity by the Shannon diversity index (<25% spatial dependence degree). Areas of low and high species diversity and richness were found in the shrub savanna fragment. Spatial distribution behavior shows relative stability regarding the number of species and the Shannon diversity index in the evaluated years.

Download Full-text

A checklist of gilled mushrooms (Basidiomycota: Agaricomycetes) with diversity analysis in Hollongapar Gibbon Wildlife Sanctuary, Assam, India

Journal of Threatened Taxa ◽

10.11609/jott.1770.7.15.8272-8287 ◽

2015 ◽

Vol 7 (15) ◽

pp. 8272 ◽

Cited By ~ 1

Author(s):

Girish Gogoi ◽

Vipin Parkash

Keyword(s):

Species Richness ◽

Diversity Index ◽

Abundant Species ◽

Shannon Diversity Index ◽

Diversity Analysis ◽

Wildlife Sanctuary ◽

Shannon Diversity ◽

Number Of Species ◽

Simpson Diversity Index ◽

Richness Index

Hollongapar Gibbon Wildlife Sanctuary is comprised of five distinct compartments. A total of 138 species of gilled mushrooms belonging to 48 genera, 23 families, five orders of the class Agaricomycetes, division Basidiomycota, have been collected and analyzed. The order Agaricales was was found with the highest number of species (113), followed by Russulales (14), Polyporales (5), Cantharellales (4) and Boletales (2). The species Coprinellus disseminatus and Megacollybia rodmani have shown the highest (8.26) and the lowest density (0.05), respectively. A total of 24 species, e.g., Termitomyces albuminosus, Marasmius curreyi, Marasmiellus candidus, Leucocoprinus medioflavus, Mycena leaiana, Hygrocybe miniata, Collybia chrysoropha, Gymnopus confluens were common with frequency percentage of 11.9, whereas Megacollybia rodmani with less frequency percentage (2.4) was found only in few quadrates of the sanctuary. The highly abundant species were Termitomyces medius (91.7) and Coprinellus disseminatus (86.8), and less abundant species were Psilocybe wayanadensis (1.0) and Lepiota sp. (1.0) in the study site. The order of the species richness index (R) compartment wise was 2>3>4>5>1. Both the Shannon diversity index and Simpson diversity index of agarics was maximum (1.88, 0.98) in compartment 2, whereas minimum (1.72, 0.95) in compartment 1 and 5, respectively. Moreover, the compartment 2 was found very much similar with compartment 3 and very less similar with compartment 1.<div> </div>

Download Full-text

The Effects of Landscape Change on Plant Diversity and Structure in the Bale Mountains National Park, Southeastern Ethiopia

10.21203/rs.3.rs-125113/v2 ◽

2020 ◽

Author(s):

Annissa Muhammed ◽

Eyasu Elias

Keyword(s):

Species Richness ◽

Landscape Change ◽

National Park ◽

Diversity Index ◽

Basal Area ◽

Economic Benefits ◽

Shannon Diversity Index ◽

Anthropogenic Factors ◽

Conservation Action ◽

Shannon Diversity

Abstract Background: This study aimed to determine the effects of landscape change on floristic composition, diversity, and structure in the Bale mountains national park, which faces a critical challenge from anthropogenic factors. The park is one of the 34 International Biodiversity Hotspots that comprise a variety of life forms. The vegetation data were collected systematically from 96 sample plots laid along 24 line transects. Vegetation composition and landscape structural analysis were made using R software version 3.5.2 and FRAGSTATS version 4.2.1, respectively.Results: Patch number was strong and positively affected species richness (r = -0.90, p < 0.05) and Shannon diversity index (r = -0.96, p < 0.01), and basal area (r = -0.96, p < 0.001), whereas mean patch size was strong and positively influenced species richness (r = 0.95, p < 0.05), diversity (r = 0.87, p < 0.05), and basal area (r = 0.82, p < 0.05). The overall species richness, Shannon diversity index, and Margalef index were significantly higher in the edge habitat than the interior at p < 0.05. However, the mean basal area of woody species in the interior habitat (11.16 ± 1.82 m2 ha-1) was significantly higher than the edge (3.99 ± 0.54 m2 ha-1) at p < 0.05.Conclusion: This study revealed that the park was a biologically diverse and ecologically significant area that provides a variety of ecological and economic benefits to the surrounding communities. Though its habitats are changing alarmingly and urgent restoration and conservation action need to be taken to reverse this situation.

Download Full-text

Diversity of Ground-Dwelling Ants (Hymenoptera: Formicidae) in Phulchowki Hill, Lalitpur, Nepal

Tribhuvan University Journal ◽

10.3126/tuj.v35i1.35829 ◽

2020 ◽

Vol 35 (1) ◽

pp. 11-20

Author(s):

Tulsi Raj Adhikari ◽

Shubha Ratna Shakya ◽

Shambhu Adhikari ◽

Indra Prasad Subedi

Keyword(s):

Species Richness ◽

Diversity Index ◽

Species Abundance ◽

Similarity Index ◽

Shannon Diversity Index ◽

Pitfall Traps ◽

Species Evenness ◽

Shannon Diversity ◽

Altitudinal Range ◽

Collection Methods

The study assesses the diversity of ground-dwelling ants (Hymenoptera: Formicidae) in Phulchowki Hill, Lalitpur, Nepal focusing their species richness altitudinally and seasonally. Ants were sampled from June 2018 to February 2019using pitfall traps, bait traps and hand collection methods covering an altitudinal range from 1500 m to 2700 m in five selected sites (1500 m, 1800 m, 2100 m,2400 m, and 2700 m). A total of 1443 specimens representing four subfamilies, 12genera and 18 morph species were collected. Formicinae (57.58%) was recorded as the most abundant subfamily followed by Myrmicinae (38.53%), Ponerinae (2.21%) and Pseudomyrmicinae (1.66%). Camponotus was the most speciose (4morphospecies) genus and was most abundant in all seasons. The highest Similarity index (0.667) was recorded between the first and second sites among five sites. Species richness (16), Shannon diversity index (1.504) and abundance (631) were the highest in autumn. Similarly, species richness (12), Shannon diversity index (1.399) and species evenness (0.563) were recorded highest at 2100 m altitude, while species abundance (519) was maximum at 1500 m.

Download Full-text

The system of faunacomponents conception and its application to qualify the degree of naturalness of fish assemblages

Acta Agraria Debreceniensis ◽

10.34101/actaagrar/25/3041 ◽

2007 ◽

pp. 93-101

Author(s):

Péter Sály

Keyword(s):

Species Richness ◽

Endemic Species ◽

Native Species ◽

Fish Assemblages ◽

Diversity Index ◽

Shannon Diversity Index ◽

Human Influence ◽

Shannon Diversity ◽

Biogeographic Regions ◽

Special Case

The increase of species richness in communities of natural biogeographic regions in an anthropogenic way can be expressed as biogeographic pollution. Where there is contaminated fauna, one must investigate how this occured. I studied how the members of Hungarian fishfauna could be present resident and have managed to workout a so-called system of fauna component conception which is suitable for this requirement.The expression of ’faunacomponent’ includes other expressions. That kind of species belong to a certain faunacomponent that reached the studied area in the same way. Species reached the studied area without an anthropogenious contribution are qualified as native fauna components. These kind of species are endemic species, occasional species and settlers. In contrast to native faunacomponents, some kind of human influence is always detectable in connection with the way reached the studied area by non-native species. Accordingly, group of non-native species includes directly or indirectly facilitated settlers, species that are introduced accidentally and those introduced intentionally. It is obvious that classifying a given species could be construed solely in connection with a certain area.Applying Shannon diversity index I have initiated the assemblage natural index (ANI) in order to show a way how to use the system of faunacomponent conception in practice. ANI refers to the degree of naturalness of faunistical samples. If ANI > 1 it means there are not any non-native species and ANI < 1 it means there are some non-native species in the sample respectively. In the latter case ANI decreases proportionally with the number of non-native species and specimens. In that special case when only one specimen of only one non-native species can be found in the faunistical sample ANI = 1.

Download Full-text

Floristic Composition, Diversity and Plant Community Along Elevational Gradients in the Afro-alpine Vegetation of Abohoy Gara Mountain, northern Ethiopia

10.21203/rs.3.rs-1198475/v1 ◽

2022 ◽

Author(s):

Muhidin Tahir ◽

Yemane G. Egzabher ◽

Meheretu Yonas ◽

Kidane Giday ◽

Hayal Lemma ◽

...

Keyword(s):

Species Richness ◽

Plant Diversity ◽

Diversity Index ◽

Floristic Composition ◽

Elevational Gradient ◽

Shannon Diversity Index ◽

Community Type ◽

Northern Ethiopia ◽

Alpine Vegetation ◽

Shannon Diversity

Abstract This research was conducted in Afro-alpine vegetation of Abohoy Gara Mountain in northern Ethiopia with the aim of analyzing floristic composition along elevational gradients, threats and conservation methods. Data were collected from 53 quadrats (15 m x 15 m) laid at 100 m interval along parallel vertical transects spaced at 500m to each other to record shrubs and trees, whereas 1 m x 1 m plots were used to record herbs. Cover abundance data were used to do community analysis using R version 3.1.2 software. Analysis of variance (ANOVA) was employed to determine significant level of species richness; abundance and Shannon diversity index along elevational gradient, whereas pearson’s correlation test was applied to check the relationship between environmental variables with species richness, species abundance and Shannon diversity index (H’) using SPSS v20. Ninety-seven plant species composed of 82 genera under 40 families were recorded. The mean number of plant species showed significant difference along elevational gradient (P < 0.05). Besides, significant (P < 0.05) negative correlation of elevation with the plant richness, abundance as well as Shannon diversity index had been observed. Based on dominant species, a total of five plant communities were identified. The maximum plant diversity occurred in community type III (3.79), whereas the least plant diversity occurred in community type IV and community type V. Vegetation cover and species composition of Abohoy Gara Mountain is being endangered by agricultural expansion, over grazing and logging of wood for construction material. Hence, it needs application of complementary on-site and offsite conservation approaches. This calls for further joint management of the Abohoy Gara Mountain by the local people and administrative bodies in the overall conservation actions that can save and rehabilitate the plant resources and their habitats.

Download Full-text

On a Variational Definition for the Jensen-Shannon Symmetrization of Distances Based on the Information Radius

Entropy ◽

10.3390/e23040464 ◽

2021 ◽

Vol 23 (4) ◽

pp. 464

Author(s):

Frank Nielsen

Keyword(s):

Diversity Index ◽

Diversity Indices ◽

Shannon Diversity Index ◽

Probability Measures ◽

Variational Optimization ◽

Shannon Diversity ◽

Concept Of Information ◽

Jensen Shannon Divergence

We generalize the Jensen-Shannon divergence and the Jensen-Shannon diversity index by considering a variational definition with respect to a generic mean, thereby extending the notion of Sibson’s information radius. The variational definition applies to any arbitrary distance and yields a new way to define a Jensen-Shannon symmetrization of distances. When the variational optimization is further constrained to belong to prescribed families of probability measures, we get relative Jensen-Shannon divergences and their equivalent Jensen-Shannon symmetrizations of distances that generalize the concept of information projections. Finally, we touch upon applications of these variational Jensen-Shannon divergences and diversity indices to clustering and quantization tasks of probability measures, including statistical mixtures.

Download Full-text

Scavenging in the Anthropocene: Human impact drives vertebrate scavenger species richness at a global scale

10.26686/wgtn.12469334.v1 ◽

2020 ◽

Author(s):

E Sebastián-González ◽

JM Barbosa ◽

JM Pérez-García ◽

Z Morales-Reyes ◽

F Botella ◽

...

Keyword(s):

Species Richness ◽

Human Impact ◽

Large Scale ◽

Diversity Index ◽

Global Scale ◽

Climatic Conditions ◽

Ecosystem Functions ◽

Number Of Species ◽

Terrestrial Vertebrate ◽

Latitudinal Patterns

© 2019 John Wiley & Sons Ltd Understanding the distribution of biodiversity across the Earth is one of the most challenging questions in biology. Much research has been directed at explaining the species latitudinal pattern showing that communities are richer in tropical areas; however, despite decades of research, a general consensus has not yet emerged. In addition, global biodiversity patterns are being rapidly altered by human activities. Here, we aim to describe large-scale patterns of species richness and diversity in terrestrial vertebrate scavenger (carrion-consuming) assemblages, which provide key ecosystem functions and services. We used a worldwide dataset comprising 43 sites, where vertebrate scavenger assemblages were identified using 2,485 carcasses monitored between 1991 and 2018. First, we evaluated how scavenger richness (number of species) and diversity (Shannon diversity index) varied among seasons (cold vs. warm, wet vs. dry). Then, we studied the potential effects of human impact and a set of macroecological variables related to climatic conditions on the scavenger assemblages. Vertebrate scavenger richness ranged from species-poor to species rich assemblages (4–30 species). Both scavenger richness and diversity also showed some seasonal variation. However, in general, climatic variables did not drive latitudinal patterns, as scavenger richness and diversity were not affected by temperature or rainfall. Rainfall seasonality slightly increased the number of species in the community, but its effect was weak. Instead, the human impact index included in our study was the main predictor of scavenger richness. Scavenger assemblages in highly human-impacted areas sustained the smallest number of scavenger species, suggesting human activity may be overriding other macroecological processes in shaping scavenger communities. Our results highlight the effect of human impact at a global scale. As species-rich assemblages tend to be more functional, we warn about possible reductions in ecosystem functions and the services provided by scavengers in human-dominated landscapes in the Anthropocene.

Download Full-text

Baseline Assessments of Wildlife Biodiversity Within Selected Areas of Central Visayas, Philippines

Journal of Biodiversity Conservation and Bioresource Management ◽

10.3329/jbcbm.v6i2.55244 ◽

2021 ◽

Vol 6 (2) ◽

pp. 27-34

Author(s):

RP Jose ◽

WA Aureo ◽

CI Narido ◽

TD Reyes Jr ◽

MB Sarnowski

Keyword(s):

Species Richness ◽

Species Diversity ◽

Diversity Index ◽

Population Trends ◽

Species Richness And Diversity ◽

Natural Park ◽

Biodiversity Inventories ◽

Baseline Information ◽

High Diversity ◽

Areas Of Protection

A comprehensive inventory of faunal biodiversity was conducted within three Key Biodiversity Areas of Central Visayas. Mt. Bandilaan Natural Park (MBNP), Balinsasayao Twin Lakes Natural Park (BTLNP), and Rajah Sikatuna Protected Landscape (RSPL). Three primary wildlife groups were surveyed: bats, birds and amphibians. Species diversity and population trends were then analyzed to assess areas of biodiversity importance. RSPL generally had the highest species richness and diversity index while MBNP consistently had the lowest. When pooled. The surveyed areas resulted in a high diversity index and rate of endemicity showing the importance of multiple areas of protection. These findings can be utilized to prioritize habitat protection as well as to serve as a baseline information for future biodiversity inventories. J. Biodivers. Conserv. Bioresour. Manag. 2020, 6(2): 27-34

Download Full-text

Modeling Soil Erosion and Landscape Metric Analysis of River Catchments in Pulau Pinang, Malaysia

Journal of Southwest Jiaotong University ◽

10.35741/issn.0258-2724.55.3.19 ◽

2020 ◽

Vol 55 (3) ◽

Author(s):

Sumayyah Aimi Mohd Najib

Keyword(s):

Land Use ◽

Soil Erosion ◽

Soil Loss ◽

Diversity Index ◽

Land Use Changes ◽

Shannon Diversity Index ◽

Universal Soil Loss Equation ◽

Data Sampling ◽

Shannon Diversity ◽

Soil Loss Equation

To determine the soil erosion in ungauged catchments, the author used 2 methods: Universal Soil Loss Equation model and sampling data. Sampling data were used to verify and validate data from model. Changing land use due to human activities will affect soil erosion. Land use has changed significantly during the last century in Pulau Pinang. The main rapid changes are related to agriculture, settlement, and urbanization. Because soil erosion depends on surface runoff, which is regulated by the structure of land use and brought about through changes in slope length, land-use changes are one of many factors influencing land degradation caused by erosion. The Universal Soil Loss Equation was used to estimate past soil erosion based on land uses from 1974 to 2012. Results indicated a significant increase in three land-use categories: forestry, built-up areas, and agriculture. Another method to evaluate land use changes in this study was by using landscape metrics analysis. The mean patch size of built-up area and forest increased, while agriculture land use decreased from 48.82 patches in 1974 to 22.46 patches in 2012. Soil erosion increased from an estimated 110.18 ton/km2/year in 1974 to an estimated 122.44 ton/km2/year in 2012. Soil erosion is highly related (R2 = 0.97) to the Shannon Diversity Index, which describes the diversity in land-use composition in river basins. The Shannon Diversity Index also increased between 1974 and 2012. The findings from this study can be used for future reference and for ungauged catchment research studies.

Download Full-text

Impacts of Different Tree Species of Different Sizes on Spatial Distribution of Herbaceous Plants in the Nigerian Guinea Savannah Ecological Zone

Scientifica ◽

10.1155/2015/106930 ◽

2015 ◽

Vol 2015 ◽

pp. 1-8 ◽

Cited By ~ 2

Author(s):

Toma Buba

Keyword(s):

Spatial Distribution ◽

Species Richness ◽

Open Field ◽

Tree Species ◽

Herbaceous Species ◽

Ecological Zone ◽

Vitellaria Paradoxa ◽

Parkia Biglobosa ◽

Species Richness And Diversity ◽

Individual Trees

This study was aimed at finding the impacts of different tree species and individual trees of different sizes on species richness, diversity, and composition of the herbaceous layer. All the three tree species have greatly increased species richness and diversity both within and outside their crown zones compared with the open grassland. Both species richness and diversity were found to be higher under all the three tree species than outside their crowns, which was in turn higher than the open field.Daniella oliverihas the highest species richness and diversity both within and outside its crown zone followed byVitellaria paradoxaand thenParkia biglobosa. The result also revealed that the same tree species with different sizes leads to different herbaceous species richness, diversity, and composition under and around the trees’ crowns.P. biglobosaandV. paradoxatrees with smaller sizes showed higher species richness and diversity under their crowns than the bigger ones. The dissimilarity of species composition differs between the inside and outside crown zones of the individuals of the same tree species and among the different trees species and the open field.

Download Full-text