scholarly journals Phylogeny and Character Evolution of the Neotropical Fern Genus Cyclodium (Dryopteridaceae)

2021 ◽  
Vol 46 (4) ◽  
pp. 916-928
Author(s):  
Amabily Bohn ◽  
Alan R. Smith ◽  
Fernando B. Matos ◽  
Robbin C. Moran ◽  
Paulo H. Labiak
Keyword(s):  
Maximum Likelihood ◽  
Morphological Characters ◽  
Character Evolution ◽  
Main Character ◽  
Phylogenetic Hypothesis ◽  
The Andes ◽  
Rhizome Growth ◽  
Molecular Phylogenetic ◽  
Plastid Markers ◽  
Amazonian Lowlands

Abstract— Cyclodium is a neotropical fern genus with 13 species, most of them distributed in the Amazonian lowlands, particularly in the Guianan region and along the border with the Andes. It belongs to the polybotryoid clade of Dryopteridaceae, being unique within this clade by a combination of characters related to rhizome growth, leaf dimorphism, anastomosing venation, and peltate indusia. Here we present a molecular phylogenetic hypothesis for Cyclodium resulting from Bayesian and maximum likelihood analyses, using molecular sequences of five plastid markers. We also map 12 morphological characters and habit onto the resulting trees. Our results support Cyclodium as monophyletic and sister to Polybotrya. The presence of peltate indusia is the main character distinguishing Cyclodium. Our results also suggest that plesiomorphic conditions in Cyclodium are free venation (vs. anastomosing), creeping rhizomes (vs. erect or decumbent), highly dissected laminae (vs. 1-pinnate), monomorphic sterile and fertile fronds (vs. dimorphic), and pinnatifid apices (vs. conform).

Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico

Zootaxa ◽  
2018 ◽  
Vol 4526 (3) ◽  
pp. 251 ◽  
Author(s):  
VIRGINIA LEÓN-RÈGAGNON ◽  
JANET TOPAN
Keyword(s):  
New Species ◽  
Taxonomic Revision ◽  
Morphological Characters ◽  
Nomen Nudum ◽  
Phylogenetic Hypothesis ◽  
Molecular Phylogenetic ◽  
Phylogenetic Hypotheses ◽  
Three New Species ◽  
Host Parasite ◽  
Species Inquirendae

Lung flukes of the genus Haematoloechus Looss, 1899 are common parasites of anurans worldwide, but the taxonomy of the group has been confusing. In this taxonomic revision, 89 species of Haematoloechus (= Pneumonoeces Looss, 1902, Ostioloides Odening, 1960, Ostiolum Pratt, 1903, Skrjabinoeces Sudarikov, 1950, Neohaematoloechus Odening, 1960, Metahaematoloechus Yamaguti, 1971) are listed. Of these, 70 are considered valid, three are species inquirendae (H. legrandi Mañé–Garzón & Gil, 1959, H. latoricensis Kozák, 1968 & H. vitelloconfluentum (Rai, 1962) Saeed, Al–Barwari & Al-Harmni, 2007), one is a nomen nudum H. sudarikovi Belouss, 1962, 14 are junior synonyms and one belongs to Ostioloides. This publication also describes three new species, H. occidentalis n. sp., H. veracruzanus n. sp. and H. mexicanus n. sp., parasitizing species of Rana Linnaeus in Mexico and redescribes Haematoloechus caballeroi (Skrjabin & Antipin, 1962) Yamaguti, 1971. The phylogenetic hypotheses based on sequences of mitochondrial and ribosomal DNA of Haematoloechus spp. show that genera proposed on the basis of morphological characters are not supported. The host records for species of Haematoloechus, together with the phylogenetic hypothesis of the genus, suggest that this host-parasite association predates the ranid diversification in the Cretaceous. 

scholarly journals Phylogenetic placement of enigmatic Astianthus (Bignoniaceae) based on molecular data, wood and bark anatomy

2021 ◽  
Vol 99 (2) ◽  
pp. 398-412
Author(s):  
Marcelo R. Pace ◽  
Brenda Hernández-Hernández ◽  
Esteban M. Martínez Salas ◽  
Lúcia G. Lohmann ◽  
N. Ivalu Cacho
Keyword(s):  
Pacific Coast ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Molecular Data ◽  
Phylogenetic Placement ◽  
The Pacific ◽  
Molecular Phylogenetic ◽  
Phloem Fibers ◽  
Plastid Markers ◽  
Bark Anatomy

Background: Astianthus is a monospecific arborescent genus of Bignoniaceae that occur in the Pacific Coast of central Mexico and northern Central America, where it grows in dense populations along riversides. Its phylogenetic placement has remained controversial since Astianthus has unusual morphological characters such as a four-loculed ovary, and simple, pulvinate, verticillate leaves. Methods: Here we used three plastid markers ndhF, rbcL, and trnL-F, wood, and bark anatomical data to investigate the phylogenetic placement of Astianthus and assign it to one of Bignoniaceae’s main clades. Results: Our molecular phylogenetic analyses indicated that Astianthus belongs in tribe Tecomeae s.s., where other charismatic Neotropical Bignoniaceae genera such as Campsis and Tecoma are currently placed. Wood and bark anatomy support this placement, as Astianthus reunites a unique combination of features only known from members of Tecomeae s.s., such as storied axial parenchyma, the co-occurrence of homo- and heterocellular rays, septate fibers, and scattered phloem fibers in the bark. Conclusions: The placement of Astianthus within Tecomeae s.s. provides further support to previous proposals for the Neotropical origin of this Pantropical tribe.

Paris lihengiana (Melanthiaceae: Parideae), a new species from Yunnan, China

Phytotaxa ◽  
2019 ◽  
Vol 392 (1) ◽  
pp. 45 ◽  
Author(s):  
ZHUN XU ◽  
NENG WEI ◽  
YING TAN ◽  
SHUAI PENG ◽  
VERONICAH MUTELE NGUMBAU ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Yunnan Province ◽  
Leaf Surface ◽  
Morphological Characters ◽  
Molecular Data ◽  
Abaxial Leaf Surface ◽  
Molecular Phylogenetic ◽  
Plastid Markers ◽  
A New Species

Paris lihengiana (Melanthiaceae), a new species from Yunnan Province, China, is described and illustrated based on evidence from morphological characters and molecular phylogeny. It differs from other species of Paris in its pubescent stem, pedicel and abaxial leaf surface, as well as other characters. Molecular phylogenetic analysis of 33 taxa in Paris was conducted based on nuclear ribosomal ITS and six plastid markers. Paris lihengiana is supported as a new species by both morphological characters and molecular data.

scholarly journals Phylogeny of the Labeoninae (Teleostei, Cypriniformes) based on nuclear DNA sequences and implications on character evolution and biogeography

2012 ◽  
Vol 58 (6) ◽  
pp. 837-850 ◽  
Author(s):  
Lanping Zheng ◽  
Junxing Yang ◽  
Xiaoyong Chen
Keyword(s):  
Molecular Phylogeny ◽  
Dna Sequences ◽  
Nuclear Dna ◽  
Morphological Characters ◽  
Character Evolution ◽  
Lower Lip ◽  
Molecular Phylogenetic Tree ◽  
Systematic Exploration ◽  
Molecular Phylogenetic ◽  
History Of

Abstract The Labeoninae is a subfamily of the family Cyprinidae, Order Cypriniformes. Oromandibular morphology within the Labeoninae is the greatest among cyprinid fishes. Although several phylogenetic studies about labeonines have been undertaken the results have been inconsistent and a comprehensive phylogeny is needed. Further, an incongruence between morphological and molecular phylogeny requires a systematic exploration of the significance of morphological characters on the basis of the molecular phylogeny. In this study, a total of 292 nucleotide sequences from 73 individuals (representing 24 genera and 73 species) of Labeoninae were analyzed. The results of the phylogenetic analysis indicate that there are four major clades within Labeoninae and three monophyletic lineages within the fourth clade. Results of the character evolution show that all oroman-dibular morphological characters are homoplastically distributed on the molecular phylogenetic tree and suggests that these characters evolved several times during the history of labeonines. In particular, the labeonine , a specific disc on the lower lip, has been acquired three times and reversed twice. These morphological characters do not have systematic significance but can be useful for taxonomy. The results of biogeography suggest that the Labeoninae originated from Southeast Asia and separately dispersed to Africa, East Asia and South Asia.

scholarly journals Unravelling interspecific relationships among highland lizards: first phylogenetic hypothesis using total evidence of the Liolaemus montanus group (Iguania: Liolaemidae)

2019 ◽  
Vol 189 (1) ◽  
pp. 349-377 ◽  
Author(s):  
Cristian Simón Abdala ◽  
Andrés Sebastián Quinteros ◽  
Romina Valeria Semhan ◽  
Ana Lucia Bulacios Arroyo ◽  
James Schulte ◽  
...  
Keyword(s):  
Molecular Diversity ◽  
Taxonomic Status ◽  
Morphological Diversity ◽  
Morphological Characters ◽  
Total Evidence ◽  
South American ◽  
Phylogenetic Hypothesis ◽  
Mitochondrial Markers ◽  
The Andes ◽  
Molecular Characters

Abstract The South American lizard genus Liolaemus comprises > 260 species, of which > 60 are recognized as members of the Liolaemus montanus group, distributed throughout the Andes in central Peru, Bolivia, Chile and central Argentina. Despite its great morphological diversity and complex taxonomic history, a robust phylogenetic estimate is still lacking for this group. Here, we study the morphological and molecular diversity of the L. montanus group and present the most complete quantitative phylogenetic hypothesis for the group to date. Our phylogeny includes 103 terminal taxa, of which 91 are members of the L. montanus group (58 are assigned to available species and 33 are of uncertain taxonomic status). Our matrix includes 306 morphological and ecological characters and 3057 molecular characters. Morphological characters include 48 continuous and 258 discrete characters, of which 70% (216) are new to the literature. The molecular characters represent five mitochondrial markers. We performed three analyses: a morphology-only matrix, a molecular-only matrix and a matrix including both morphological and molecular characters (total evidence hypothesis). Our total evidence hypothesis recovered the L. montanus group as monophyletic and included ≥ 12 major clades, revealing an unexpectedly complex phylogeny.

The Decursivum Group of Elaphoglossum sect. Polytrichia (Dryopteridaceae): Non-subulate Species Nested in an Otherwise Subulate-scaled Clade

2019 ◽  
Vol 104 (3) ◽  
pp. 400-428
Author(s):  
Fernando B. Matos ◽  
Paulo H. Labiak ◽  
Robbin C. Moran
Keyword(s):  
Phylogenetic Analysis ◽  
West Indies ◽  
Southeastern Brazil ◽  
Morphological Similarity ◽  
The West ◽  
Distribution Maps ◽  
The Andes ◽  
Molecular Phylogenetic ◽  
Plastid Markers ◽  
A New Species

Elaphoglossum Schott ex J. Sm. sect. Polytrichia Christ is characterized by the presence of subulate scales and the absence of hydathodes. We did a molecular phylogenetic analysis using three non-coding plastid markers and found that five species thought to belong to section Elaphoglossum are actually members of section Polytrichia. The five species were previously thought to belong to section Elaphoglossum because they lack the characteristic subulate scales of section Polytrichia. We refer to these species as the Decursivum Group. We assign two other species to this group based on their morphological similarity to the known members of the group. Besides lacking subulate scales on the laminae, the seven species of the Decursivum Group are distinctive by having a submarginal connecting vein, a character otherwise absent in section Polytrichia. The group is entirely Neotropical, occurring at middle elevations and extending from the West Indies and Mexico to Bolivia and southeastern Brazil. For the Decursivum Group, we provide a taxonomic treatment including a key, descriptions, illustrations, distribution maps, discussion, and lists of specimens examined. Lectotypes are designated for Acrostichum miersii Baker and A. papyraceum Fée. A new species from the Andes, E. vascoae F. B. Matos & R. C. Moran, is described and illustrated.

scholarly journals Sporades jaechi sp. nov. with comments on classification of the New Caledonian genus Sporades Fauvel (Coleoptera, Carabidae, Trechini, Trechodina)

ZooKeys ◽  
2020 ◽  
Vol 908 ◽  
pp. 123-136
Author(s):  
James К. Liebherr
Keyword(s):  
New Caledonia ◽  
Morphological Characters ◽  
Phylogenetic Hypothesis ◽  
Locality Record ◽  
Molecular Phylogenetic ◽  
Increasing Knowledge ◽  
Phylogenetic Hypotheses

Sporades jaechisp. nov. from Poum, New Caledonia is newly described and shown to be a member of the monophyletic Sporades subgenus Perileptosporades Deuve, 2010. Sporades millei Giachino and S. schuhi Donabauer are newly recognized as members of the subgenus Perileptosporades, and a key to its species is provided. Although Perileptosporades can be defined monophyletically relative to the rest of the genus, genitalic variation among species assigned to the nominate subgenus Sporades Fauvel, 1882 leave monophyly of that taxon ambiguously supported. Several morphological characters of long- standing use have been proposed to define the mutual monophyly of Sporadess. l. and its putative adelphotaxon, Trechodes Blackburn, 1901. Increasing knowledge concerning the diversity of male genitalic characters among Sporades spp. lends support to a recently proposed molecular phylogenetic hypothesis positing that Sporades evolved from within Trechodes. The consequences of the alternate phylogenetic hypotheses on their attendant nomenclature are discussed. An additional locality record for S. sexpunctatus Fauvel expands the known distribution of this species to include most of Grande Terre, New Caledonia.

A five-marker molecular phylogeny of the Styphelieae (Epacridoideae, Ericaceae) supports a broad concept of Styphelia

2015 ◽  
Vol 28 (6) ◽  
pp. 368 ◽  
Author(s):  
Caroline Puente-Lelièvre ◽  
Michael Hislop ◽  
Mark Harrington ◽  
Elizabeth A. Brown ◽  
Maria Kuzmina ◽  
...  
Keyword(s):  
Internal Transcribed Spacer ◽  
Sequence Data ◽  
Morphological Diversity ◽  
Morphological Characters ◽  
Bayesian Analyses ◽  
Close Phylogenetic Relationship ◽  
Broad Concept ◽  
Molecular Phylogenetic ◽  
Large Genus ◽  
Plastid Markers

The Styphelieae is the largest of the seven tribes within the subfamily Epacridoideae Arn. (Ericaceae Juss.). Recent molecular phylogenetic work has resulted in the recircumscription of some genera and the erection of new ones, but several non-monophyletic genera remain. Most of them are concentrated in the well-supported Styphelia–Astroloma clade, which contains species currently assigned to Leucopogon R.Br., Styphelia Sm., Astroloma R.Br., Croninia J.M. Powell and Coleanthera Stschegl. Parsimony and Bayesian analyses of sequence data from four plastid markers (rbcL, matK, trnH–psbA, and atpB–rbcL), and the nuclear ribosomal internal transcribed spacer (ITS) for 207 taxa corroborate the polyphyly of the genera Astroloma, Leucopogon and Styphelia and resolve 12 well supported groups. Of these groups, two can be distinguished by unique morphological features and another six by different character combinations. The remaining groups are morphologically heterogeneous and inconsistent, and not readily distinguishable. A number of species remain ungrouped either because their phylogenetic relationships are not clear or because they do not show strong morphological affinities with the group to which they have a close phylogenetic relationship. Translating the results into a phylogenetic classification is a choice between accepting a single, large genus or at least 12 smaller genera. The first option would result in a heterogeneous assemblage conveying limited morphological information. The multi-generic option would be a better reflection of the morphological diversity of the clade, but would result in many genera lacking readily observable, diagnostic morphological characters. We prioritise the nomenclatural stability inherent in the former approach and advocate expanding Styphelia to include all taxa in the Styphelia–Astroloma clade.

Transfer of the Kobresia taxa of the flora of Russia and adjacent countries to the genus Carex (Cyperaceae)

2020 ◽  
pp. 125-129
Author(s):  
D. G. Melnikov ◽  
L. I. Krupkina
Keyword(s):  
International Collaboration ◽  
Morphological Characters ◽  
Published Data ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
New Nomenclatural Combinations

Based on the published data of molecular phylogenetic studies of the tribe Cariceae Dumort. genera (Cyperaceae), obtained by an international collaboration (The Global Carex Group, 2016; et al.), and morphological characters of the genera (Kukkonen, 1990; and others), new nomenclatural combinations and replacement names in the genus Carex L. are published for 11 species, one subspecies and two sections previously included in the genus Kobresia Willd.

scholarly journals Disentangling relationships among eastern Mediterranean Cymbalaria including description of a novel species from the southern Peloponnese (Greece)

2021 ◽  
Vol 307 (2) ◽  
Author(s):  
Pau Carnicero ◽  
Núria Garcia-Jacas ◽  
Llorenç Sáez ◽  
Theophanis Constantinidis ◽  
Mercè Galbany-Casals
Keyword(s):  
Eastern Mediterranean ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Distribution Patterns ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Data ◽  
Long Distance ◽  
Aegean Islands ◽  
Molecular Phylogenetic

AbstractThe eastern Mediterranean basin hosts a remarkably high plant diversity. Historical connections between currently isolated areas across the Aegean region and long-distance dispersal events have been invoked to explain current distribution patterns of species. According to most recent treatments, at least two Cymbalaria species occur in this area, Cymbalaria microcalyx and C. longipes. The former comprises several intraspecific taxa, treated at different ranks by different authors based on morphological data, evidencing the need of a taxonomic revision. Additionally, some populations of C. microcalyx show exclusive morphological characters that do not match any described taxon. Here, we aim to shed light on the systematics of eastern Mediterranean Cymbalaria and to propose a classification informed by various sources of evidence. We performed molecular phylogenetic analyses using ITS, 3’ETS, ndhF and rpl32-trnL sequences and estimated the ploidy level of some taxa performing relative genome size measures. Molecular data combined with morphology support the division of traditionally delimited C. microcalyx into C. acutiloba, C. microcalyx and C. minor, corresponding to well-delimited nrDNA lineages. Furthermore, we propose to combine C. microcalyx subsp. paradoxa at the species level. A group of specimens previously thought to belong to Cymbalaria microcalyx constitute a well-defined phylogenetic and morphological entity and are described here as a new species, Cymbalaria spetae. Cymbalaria longipes is non-monophyletic, but characterized by being glabrous and diploid, unlike other eastern species. The nrDNA data suggest at least two dispersals from the mainland to the Aegean Islands, potentially facilitated by marine regressions.

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