mitochondrial markers
Recently Published Documents


TOTAL DOCUMENTS

222
(FIVE YEARS 64)

H-INDEX

26
(FIVE YEARS 4)

Author(s):  
Hamidie Ronald D. Ray ◽  
◽  
Asep Bayu Dani Nandiyanto ◽  
Rita Patriasih ◽  
Abdullah Firmansah ◽  
...  

Curcumin, which comes from the rhizome Curcuma longa L, is known as the polyphenol with a high level content of natural antioxidants and has benefits on pharmacological activities and human health. The purpose of current study was to investigate the effect of nanocurcumin itself and the combination with exercise on 5' adenosine monophosphate-activated protein kinase (AMPK), PGC-1α, and mitochondrial protein expression of cytochrome c oxidase subunit IV (COX-IV), in rat gastrocnemius muscle. Animals separated to be non-endurance exercise and endurance exercise group. Curcumin and nanocurcumin with doses 100 mg per kg-body weight per day were given peroral in both groups for 28 days in order to determine the effect of nanocurcumin on mitochondrial markers including AMPK-PGC-1α and COX-IV. Western blotting (WB) method was applied to investigate the protein expression on skeletal muscle. The result showed that nanocurcumin increased mitochondrial marker protein COX-IV on non exercise and exercise groups. Furthermore, our result demonstrated that nanocurcumin treatment combined with exercise increased the phosphorylation of AMPK and PGC-1α. Addition, nanocurcumin treatment alone, without exercise, also increased PGC-1α protein expression. This current result suggests that nanocurcumin could increase mitochondrial biogenesis markers. When it is used together with exercise, it potentially has the additive effect of exercise to increase mitochondrial markers through AMPK-PGC-1α signaling pathway. In conclusion, nanocurcumin treatment combined with exercise potentially increases mitochondrial biogenesis.


PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12441
Author(s):  
Szilvia Keszte ◽  
Arpad Ferincz ◽  
Katalin Tóth-Ihász ◽  
Réka Enikő Balogh ◽  
Ádám Staszny ◽  
...  

Background Invasive gibel carp, Carassius gibelio (Bloch, 1782) has become well-established in the Hungarian waters and now are spreading in the European waters. On major concern now is the potential hybridization between gibel carp and the other invasive species in the Carassius auratus complex (CAC), which may further accelerate the spread of the whole invasive species complex. The identification of gibel carp and their hybrids is difficult because of its morphological similarity to the other species in CAC. Here we carry out a genomic assessment to understand the history of gibel carp invasion and its phylogenetic relationship with the other species in CAC. Three loci of the mitochondrial genome (D-loop, CoI, Cytb) were used to determine the phylogenetic origin of individuals and relarionship among six gibel carp populations and the other species in the CAC. Methodolgy A total of 132 gibel carp samples from six locations in Southern Transdanubia (Hungary) were collected after phenotypic identification to measure the genetic diversity within and among gibel carp populations of Southern Transdanubia (Hungary). The genetic background was examined by the sequences of the mitochondrial genome: D-loop, Cytochrome c oxidase I (CoI) and Cytochrome b (Cytb). Mitochondrial genetic markers are excellent tools for phylogenetic studies because they are maternally inherited. Successfully identified haplotypes were aligned and with reference sequences in nucleotide databases (i.e., NCBI-BLAST: National Centre for Biotechnology Information and BOLD: Barcode of Life Data System). The phylogenetic relationships among gibel carp populations were then analyzed together with the reference sequences to understand the relationship and the level of hybridization with the species in CAC. Results Among the 132 aligned D-loop sequences 22 haplotypes were identified. Further examination of representative individuals of the 22 haplotypes, six Cytb and four CoI sequences were detected. The largest number of haplotypes of all three loci were found in Lake Balaton, the largest shallow lake in Central Europe. Based on the NCBI-BLAST alignment of the D-loop, haplotypes of Carassius auratus auratus and Carassius a. buergeri in CAC were identified in the C. gibelio samples. Further analysis of haplotypes with the other two mitochondrial markers confirmed the occurrence of intragenus hybridization of C. gibelio in the Hungarian waters. Conclusion By using three mitochondrial markers (D-loop, Cytb, CoI), we genomically characterized a gibel carp-complex in Hungarian waters and assessed the C. gibelio phylogenetic status between them. Hybrid origin of locally invasive Carassius taxon was detected in Hungary. It points out that invasive species are not only present in Hungary but reproduce with each other in the waters, further accelerating their spread.


2021 ◽  
pp. 113-152
Author(s):  
Anna W. McCallum ◽  
Shane T. Ahyong ◽  
Nikos Andreakis

This study reports on new squat lobsters of the genus Munida collected during recent surveys of Australia’s continental margins. We report on 33 species of Munida including seven new species and 14 new range extensions for Australia. More than 500 specimens were collected, mostly from the western continental margin of Australia, but also including a new species from deep water (>2000 m) off Tasmania. We provide new data on the colour patterns of some species and include molecular data from two mitochondrial markers (16S rRNA and COI) to support the taxonomic status of the new species.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Johan Fernström ◽  
Synthia H. Mellon ◽  
Marlon A. McGill ◽  
Martin Picard ◽  
Victor I. Reus ◽  
...  

AbstractMitochondrial dysfunction has been implicated in major depressive disorder (MDD). A measure of mitochondrial respiratory chain (RC) enzymatic activity—the Mitochondrial Health Index (MHI)—has previously been found to correlate with stress and emotional states in caregivers. We here report mitochondrial RC activities, mitochondrial DNA copy number (mtDNAcn), and the composite MHI in unmedicated and somatically healthy subjects with MDD (n = 47) and healthy controls (HC) (n = 11). We also explore, in a subset of the MDD sample (n = 33), whether these markers are associated with response to 8 weeks of SSRI treatment. Mitochondrial RC complexes I, II, IV, citrate synthase (CS), mtDNAcn, and the MHI were assayed in peripheral blood mononuclear cells. Treatment response was defined as >50% decrease on the 25-item Hamilton Depression Rating Scale (HRDS-25). There were no significant differences in MHI or any of the mitochondrial markers between MDD subjects and HCs. Compared to SSRI nonresponders, SSRI responders had significantly higher baseline mitochondrial content markers CS (p = 0.02) and mtDNAcn (p = 0.02), and higher complex I activity (p = 0.01). Complex II activity increased significantly over treatment, irrespective of clinical response (p = 0.03). Complex I activity decreased in responders (n = 9), but increased in nonresponders (n = 18) (group x time interaction, p = 0.02). Absolute treatment-associated change in HDRS-25 scores correlated significantly with change in complex I activity between baseline and week 8 (r = 0.47, p = 0.01). Although mitochondrial markers did not distinguish MDD from controls, they did distinguish SSRI responders from nonresponders. If larger studies validate these mitochondrial differences, they may become useful biomarkers and identify new drug targets.


2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Mandy Herzig ◽  
Pavlo Maksimov ◽  
Christoph Staubach ◽  
Thomas Romig ◽  
Jenny Knapp ◽  
...  

Abstract Background Alveolar echinococcosis (AE) is a clinically serious zoonosis caused by the fox tapeworm Echinococcus multilocularis. We studied the diversity and the distribution of genotypes of E. multilocularis isolated from foxes in Brandenburg, Germany, and in comparison to a hunting ground in North Rhine-Westphalia. Methods Echinococcus multilocularis specimens from 101 foxes, 91 derived from Brandenburg and 10 derived from North Rhine-Westphalia, were examined. To detect potential mixed infections with different genotypes of E. multilocularis, five worms per fox were analyzed. For genotyping, three mitochondrial markers, namely cytochrome c oxidase subunit 1 (Cox1), NADH dehydrogenase subunit 1 (Nad1), and ATP synthase subunit 6 (ATP6), and the nuclear microsatellite marker EmsB were used. To identify nucleotide polymorphisms, the mitochondrial markers were sequenced and the data were compared, including with published sequences from other regions. EmsB fragment length profiles were determined and confirmed by Kohonen network analysis and grouping of Sammon’s nonlinear mapping with k-means clustering. The spatial distribution of genotypes was analyzed by SaTScan for the EmsB profiles found in Brandenburg. Results With both the mitochondrial makers and the EmsB microsatellite fragment length profile analyses, mixed infections with different E. multilocularis genotypes were detected in foxes from Brandenburg and North Rhine-Westphalia. Genotyping using the mitochondrial markers showed that the examined parasite specimens belong to the European haplotype of E. multilocularis, but a detailed spatial analysis was not possible due to the limited heterogeneity of these markers in the parasite population. Four (D, E, G, and H) out of the five EmsB profiles described in Europe so far were detected in the samples from Brandenburg and North Rhine-Westphalia. The EmsB profile G was the most common. A spatial cluster of the E. multilocularis genotype with the EmsB profile G was found in northeastern Brandenburg, and a cluster of profile D was found in southern parts of this state. Conclusions Genotyping of E. multilocularis showed that individual foxes may harbor different genotypes of the parasite. EmsB profiles allowed the identification of spatial clusters, which may help in understanding the distribution and spread of the infection in wildlife, and in relatively small endemic areas. Graphical Abstract


Zootaxa ◽  
2021 ◽  
Vol 5047 (5) ◽  
pp. 531-546
Author(s):  
GIOVANNI A. CHAVES-PORTILLA ◽  
ERIKA NATHALIA SALAZAR ◽  
JOSÉ GIL-ACERO ◽  
ADRIANA DORADO-CORREA ◽  
ROBERTO MÁRQUEZ ◽  
...  

A new species of Andinobates (Dendrobatidae) is described from the East Andes of Colombia, just 37 km away from the Colombian capital, Bogotá. Andinobates supata sp. nov., represents the second known species of yellow Andinobates, and can be distinguished from the other, Andinobates tolimensis, by an unique combination of ventral and dorsal color patterns. Our phylogenetic analyses, based on ≈ 1120 bp from two mitochondrial markers (16S rRNA and cytochrome b) showed that this new taxon is sister to a clade formed by A. cassidyhornae, A. bombetes, A. opisthomelas, A. tolimensis and A. virolinensis. The new species appears to be restricted to a handful of small forest fragments (<10 ha) distributed in no more than 5 km2, between 1800–2000 m elevation, where the human activity is high. In addition, more than 90% of the original forest has been logged at the type locality, and its watersheds receive considerable agrochemical discharges. Altogether, the evidence suggests that this new species should be listed as Critically Endangered and should receive immediate attention regarding basic research and urgent conservation measures.  


PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12168
Author(s):  
Roberto-Emiliano Trejo-Salazar ◽  
Gabriela Castellanos-Morales ◽  
DulceCarolina Hernández-Rosales ◽  
Niza Gámez ◽  
Jaime Gasca-Pineda ◽  
...  

Leptonycteris yerbabuenae, the lesser long-nosed bat is an abundant migratory nectar-feeding bat found in most of Mexico, and in some areas of northern Central America and small sections of southwestern USA. We analyzed the distribution of the maternal and paternal lineages of this species with phylogeographic methods based on two mitochondrial markers, Cyt-b and D-loop, and a marker located in the Y chromosome, DBY. We obtained tissue samples from 220 individuals from 23 localities. Levels of genetic diversity (haplotype diversity, Hd) were high (Cyt-b = 0.757; D-loop = 0.8082; DBY = 0.9137). No clear patterns of population genetic structure were found for mitochondrial markers, while male genetic differentiation suggested the presence of two lineages: one from Mexican Pacific coast states and another from central-southern Mexico; in accordance to strong male philopatry and higher female migration. We used genealogical reconstructions based on Bayesian tools to calculate divergence times, and to test coalescent models to explain changes in L. yerbabuenae historical demography. Our results show that recent demographic changes were consistent with global climatic changes (∼130,000 kyr ago for Cyt-b and ∼160,000 kyr for D-loop) and divergence times dated from molecular genealogies exhibited older divergence times, Cyt-b (4.03 mya), D-loop (10.26 mya) and DBY (12.23 mya). Accordingly, the female lineage underwent demographic expansion associated to Pleistocene climate change, whereas the male lineage remained constant.


Pathogens ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1118
Author(s):  
Sokani Sánchez-Montes ◽  
Beatriz Salceda-Sánchez ◽  
Sergio E. Bermúdez ◽  
Gabriela Aguilar-Tipacamú ◽  
Gerardo G. Ballados-González ◽  
...  

The Rhipicephalus sanguineus group encompasses at least 12 validated species of Palearctic and Afrotropical hard ticks, which are relevant in veterinary medicine and public health. The taxonomy of R. sanguineus s.s., has been particularly intensely debated, due to its wide geographic distribution, morphological variants, parasite-host associations, and its capacity and vectorial competence for the transmission of several pathogens. By sequencing mitochondrial markers, it was possible to identify the existence of multiple lineages, among which the Tropical and the Temperate lineages stand out, particularly in America. However, the northern limit between these lineages is not clear due to the lack of extensive sampling across Mexico. For this reason, the aim of the present study was to determine the genetic diversity and structure of the R. sanguineus group in Mexico and to compare it with the populations reported in the Americas, in order to propose the northern limit of the R. sanguineus Tropical lineage and the potential regions of sympatry with R. sanguineus s.s. The findings of this study now confirm the presence of R. sanguineus s.s. in Mexico, showing a subtle genetic structure and high genetic diversity throughout its distribution in the Americas. In contrast, the Tropical lineage seems to be genetically less diverse in its overall distribution in the Americas. The genetic diversity of these two independent lineages could have important epidemiological implications in the transmission of tick pathogens.


2021 ◽  
pp. 105040
Author(s):  
German A. Gutiérrez-Liberato ◽  
Ingrid A. Lotta-Arévalo ◽  
Leydy P. González ◽  
Mario Vargas-Ramírez ◽  
Oscar Rodríguez-Fandiño ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document