scholarly journals Characterization of genomic clones using circulating tumor DNA in patients with hepatocarcinoma

2018 ◽  
Vol 7 (2) ◽  
pp. 321-329
Author(s):  
Yan Sun ◽  
Rui Meng ◽  
Zheng-Yu Cheng ◽  
Chen Fan ◽  
Xiao-Ming Wei ◽  
...  
Medicine ◽  
2020 ◽  
Vol 99 (33) ◽  
pp. e21196
Author(s):  
Yin Kang ◽  
Xiaohua Lin ◽  
Dezhi Kang

Cancers ◽  
2022 ◽  
Vol 14 (2) ◽  
pp. 288
Author(s):  
Hesam Abouali ◽  
Seied Ali Hosseini ◽  
Emma Purcell ◽  
Sunitha Nagrath ◽  
Mahla Poudineh

During cancer progression, tumors shed different biomarkers into the bloodstream, including circulating tumor cells (CTCs), extracellular vesicles (EVs), circulating cell-free DNA (cfDNA), and circulating tumor DNA (ctDNA). The analysis of these biomarkers in the blood, known as ‘liquid biopsy’ (LB), is a promising approach for early cancer detection and treatment monitoring, and more recently, as a means for cancer therapy. Previous reviews have discussed the role of CTCs and ctDNA in cancer progression; however, ctDNA and EVs are rapidly evolving with technological advancements and computational analysis and are the subject of enormous recent studies in cancer biomarkers. In this review, first, we introduce these cell-released cancer biomarkers and briefly discuss their clinical significance in cancer diagnosis and treatment monitoring. Second, we present conventional and novel approaches for the isolation, profiling, and characterization of these markers. We then investigate the mathematical and in silico models that are developed to investigate the function of ctDNA and EVs in cancer progression. We convey our views on what is needed to pave the way to translate the emerging technologies and models into the clinic and make the case that optimized next-generation techniques and models are needed to precisely evaluate the clinical relevance of these LB markers.


2016 ◽  
Vol 34 (15_suppl) ◽  
pp. 2023-2023 ◽  
Author(s):  
Nadia Faiq ◽  
Sandip Pravin Patel ◽  
Lyudmila Bazhenova ◽  
Barbara A. Parker ◽  
Steven C. Plaxe ◽  
...  

2019 ◽  
Vol 37 (15_suppl) ◽  
pp. 9063-9063 ◽  
Author(s):  
Sai-Hong Ignatius Ou ◽  
Russell Madison ◽  
Jacqulyne Ponville Robichaux ◽  
Jeffrey S. Ross ◽  
Vincent A. Miller ◽  
...  

9063 Background: EGFR and HER2 ( ERBB2) exon 20 insertion (ex20ins) mutations represent a subset of driver alterations in NSCLC, which historically have largely not responded to available targeted therapies. Recently, inhibitors specifically targeting ex20ins have shown efficacy in the clinic. Previous studies have described the landscape of EGFR ex20ins in NSCLC (PMID: 29981927), but similar descriptions of HER2 ex20ins are lacking. Methods: Hybrid capture-based comprehensive genomic profiling (CGP) was performed on 39,644 tissue and 4,062 blood-based circulating tumor DNA (ctDNA) samples from 43,706 unique patients with advanced NSCLC. Tumor mutational burden (TMB) was determined on 0.8-1.1 Mbp of sequenced DNA for tissue samples and reported as mutations/Mb. Results: HER2 ex20ins were detected in 1.5% (648/43,706) of NSCLC cases (614 tissue and 34 ctDNA). HER2 ex20ins represented 35% (648/1,845) of HER2-altered NSCLCs overall, while 46% (843/1,845) of cases had HER2 amplification (≥5 copies), 17% (320/1,845) had a non-ex20ins HER2 short variant (SV; most commonly S310F in 84 cases and V659E in 29 cases), and 1.8% (34/1,845) had HER2 amplification + SV. There were 28 unique ex20ins including most commonly A775_G776insYVMA (69%, 450/648), G776 > VC (12%, 76/648) and P780_Y781insGSP (8.6%, 56/648). Cases with HER2 ex20ins were significantly enriched for adenocarcinoma histology (89% vs 66%), female gender (64% vs 51%) and low TMB (95% vs 65% TMB < 10 mut/Mb) compared to HER2 wild-type cases (all p < 0.0001). HER2 amplification (7 median copies, range 5-39) co-occurred in 16% (103/648) of HER2 ex20ins cases. Co-occurrence of other known NSCLC drivers in HER2 ex20ins cases was rare (0.8%, 5/648). In contrast, non- HER2ex20ins cases with HER2 amplification or other HER2 SVs each had co-occurring known driver alterations in ~30% of cases. There was no significant difference in histology, gender, age, HER2 co-amplification or TMB in cases with YVMA vs non-YVMA ex20ins. Conclusions: HER2 ex20ins are found in 1.5% of NSCLCs and are generally mutually exclusive of other known drivers. Detection of these alterations may be critical to identify matched targeted therapy options for this subset of patients.


2020 ◽  
Vol 31 ◽  
pp. S280-S281
Author(s):  
J. Lee ◽  
J.H. Chung ◽  
J. Venstrom ◽  
B. Alexander ◽  
A.B. Schrock ◽  
...  

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