scholarly journals PEMANFAATAN PIRAMIDA GEN KETAHANAN TERHADAP PENYAKIT HAWAR DAUN BAKTERI DALAM MENDUKUNG PERAKITAN VARIETAS UNGGUL PADI Application of Gene Pyramiding For Resistance to Bacterial Leaf Blight to Develop New Rice Variety

2020 ◽  
Vol 39 (1) ◽  
pp. 11
Author(s):  
Fatimah Fatimah ◽  
Joko Prasetiyono

<p>Bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv oryzae (Xoo) is an important bacterial disease and very destructive to rice plant. BLB decreased rice production from 20%-30% up to 80%. Host-plant resistance is a cost-effective and environmentally safe approach to reduce yield loss. However the development of new rice variety by conventional selection would take several years. The genetic improvement in rice production considered as a vital program in order to ensure national food security. The availability of corresponding molecular marker makes it more precision and efficient by reducing the time required for selection. This present article highlights the molecular approach in breeding for BLB disease resistant rice varieties. In detail, it will be discussed the application of molecular marker assisted backcrossing and pyramiding gene resistance offered breeders to accelerate the rice breeding program for resistance to BLB. The pyramiding of three resistance BLB genes (xa5, Xa7, and Xa21and one gene (Xa4) as a background into two elite indica rice varieties, Ciherang and Inpari 13, was introduced successfully. The combining of conventional breeding, marker assisted backcrossing, disease evaluation, agronomic performance and yield has led the significant resistance of pyramid lines to Xoo Race III, IV and VIII in vegetative and generative phase while their yield potential was maintained (6-7 ton/ha). The current status of Ciherang-HDB and Inpari 13-HDB pyramid lines is the production of nucleoseeds and breeder seeds. This broad spectrum and durable resistance characteristic may help in controlling BLB disease in different region of Indonesia and it will facilitate the rice self-sustainability program.</p><p>Keywords: Rice, gene pyramiding, plant breeding, molecular marker.</p><p> </p><p><strong>Abstrak</strong></p><p>Penyakit hawar daun bakteri (HDB) yang disebabkan oleh Xanthomonas oryzae pv oryzae (Xoo) merupakan penyakit penting pada tanaman padi karena dapat menurunkan produksi padi rata-rata 20-30% bahkan dapat mencapai 80%. Penggunaan varietas tahan merupakan cara pengendalian yang paling efektif, ramah lingkungan, dan mudah dilakukan. Namun pengembangan varietas unggul baru melalui seleksi konvensional memerlukan waktu lebih lama. Perbaikan varietas padi perlu terus dikembangkan dalam mendukung ketahanan pangan dan kemandirian pangan nasional. Tersedianya marka molekuler membantu proses pemuliaan tanaman menjadi lebih presisi dan lebih efisien sehingga mengurangi waktu seleksi pada tanaman progeni. Tulisan ini memfokuskan pendekatan molekuler dalam pemuliaan varietas tahan penyakit HDB melalui piramida gen ketahanan untuk mempercepat progam pemuliaan padi tahan penyakit HDB. Kegiatan menggabungkan tiga gen ketahanan (xa5, Xa7, dan Xa21) dan satu gen (Xa4) sebagai background ke dalam padi varietas Ciherang dan Inpari-13 telah berhasil dilakukan. Melalui penggabungan beberapa pendekatan yaitu pemuliaan konvensional dan silang balik berbantu marka, evaluasi penyakit dan keragaan agronomi serta komponen hasil telah menunjukkan peningkatan ketahanan yang nyata pada galur-galur piramida Ciherang HDB dan Inpari-13 HDB pada tiga ras Xoo (Ras III, IV, dan VIII), baik pada fase vegetatif maupun generatif dengan potensi hasil tidak berbeda nyata dengan tetuanya (6-7 t/ha). Saat ini sudah diproduksi benih inti (NS) dan benih penjenis (BS) galur-galur piramida Ciherang HDB dan Inpari-13 HDB. Dengan demikian, galur-galur piramida memiliki spektrum yang luas dan mampu bertahan dalam jangka waktu lama sehingga dapat mengontrol penyakit HDB di berbagai wilayah Indonesia dan mendukung target pemerintah untuk mempertahankan swasembada beras secara berkelanjutan.</p><p>Kata kunci: Padi, piramida gen, pemuliaan tanaman, marka molekuler.<br /><br /></p><p> </p>

2021 ◽  
Vol 905 (1) ◽  
pp. 012068
Author(s):  
Hadiwiyono ◽  
S H Poromarto ◽  
S Widono ◽  
R F Rizal

Abstract Bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is one of the limiting factors in rice production. A local cultivar, rice “Pandanwangi” is a superior variety much preferred and cultivated by the farmers in Cianjur, West Java, Indonesia. The information about the response of “Pandangwangi” to Xoo is still poorly understood. This paper reports the results of the evaluation of “Pandanwangi” response against BLB. This research was conducted in a greenhouse with artificial inoculation using Xoo strains III, IV, and VIII with bacterial suspension at 108 cfu.mL−1. The results showed that the response of cv Pandanwangi to Xoo infection was different from the strain of Xoo. “Pandanwangi” cultivar was susceptible to Xoo strain III and VIII and very susceptible to strain IV.


2020 ◽  
Vol 110 (2) ◽  
pp. 267-277
Author(s):  
C. Tekete ◽  
S. Cunnac ◽  
H. Doucouré ◽  
M. Dembele ◽  
I. Keita ◽  
...  

Bacterial leaf blight caused by Xanthomonas oryzae pv. oryzae represents a severe threat to rice cultivation in Mali. Characterizing the pathotypic diversity of bacterial populations is key to the management of pathogen-resistant varieties. Forty-one X. oryzae pv. oryzae isolates were collected between 2010 and 2013 in the major rice growing regions in Mali. All isolates were virulent on the susceptible rice variety Azucena; evaluation of the isolates on 12 near isogenic rice lines, each carrying a single resistance gene, identified six new races (A4 to A9) and confirmed race A3 that was previously reported in Mali. Races A5 and A6, isolated in Office du Niger and Sélingué, were the most prevalent races in Mali. Race A9 was the most virulent, circumventing all of the resistance genes tested. Xa3 controlled six of seven races (i.e., 89% of the isolates tested). The expansion of race A9 represents a major risk to rice cultivation and highlights the urgent need to identify a local source of resistance. We selected 14 isolates of X. oryzae pv. oryzae representative of the most prevalent races to evaluate 29 rice varieties grown by farmers in Mali. Six isolates showed a high level of resistance to X. oryzae pv. oryzae and were then screened with a larger collection of isolates. Based on the interactions among the six varieties and the X. oryzae pv. oryzae isolates, we characterized eight different pathotypes (P1 to P8). Two rice varieties, SK20-28 and Gigante, effectively controlled all of the isolates tested. The low association observed among races and pathotypes of X. oryzae pv. oryzae suggests that the resistance observed in the local rice varieties does not simply rely on single known Xa genes. X. oryzae pv. oryzae is pathogenically and geographically diverse. Both the races of X. oryzae pv. oryzae characterized in this study and the identification of sources of resistance in local rice varieties provide useful information to inform the design of effective breeding programs for resistance to bacterial leaf blight in Mali.


2019 ◽  
Vol 2019 ◽  
pp. 1-8
Author(s):  
Samuel Oppong Abebrese ◽  
Alex Yeboah ◽  
Wilson Dogbe ◽  
Paul Kofi Ayirebi Dartey ◽  
Richard Akromah ◽  
...  

Hybrid rice technology is one of the promising, sustainable, and proven technologies for increasing rice production and productivity with a yield advantage of 15–30% over modern inbred varieties. The potential of hybrid rice has so far not been exploited in Ghana. This study was undertaken to evaluate the yield potential, reaction to diseases, and physical grain attributes of some introduced hybrids. The trials were laid out in a randomized complete block design (RCBD) with three replicates across three locations. Data were taken on grain yield, yield components, reaction to diseases, and grain physical characteristics. Four promising hybrids (SWARNA 2, ARGH 1501, ARGH 1502, and ARGH 1503) with a mean yield advantage of 15–20.8% over the best inbred check “AgraRice” were identified. With few exceptions, the hybrids were broadly adapted and had adequate resistance to blast and bacterial leaf blight. Most of the test hybrids had long slender grains which make them acceptable to the Ghanaian market but lacked aroma.


2020 ◽  
Vol 20 (2) ◽  
pp. 43
Author(s):  
Nafisah Nafisah ◽  
Celvia Roza ◽  
Nani Yunani ◽  
Aris Hairmansis ◽  
Tita Rostiati ◽  
...  

<p class="abstrakinggris">Hundred of high yielding and bacterial leaf blight (<em>Xanthomonas oryzae</em> pv. <em>oryzae, Xoo</em>) resistant rice varieties released since the 1960s are important sources of genetic materials for exploring superior genotypes. The study aimed to evaluate the genetic resistance of 177 rice varieties to <em>Xoo</em> and their agronomic traits. The evaluations were conducted at the Indonesian Center for Rice Research Experimental Station during the wet season (December 2015-March 2016). The bacterial leaf blight resistance was evaluated for <em>Xoo</em> pathotypes III, IV, and VIII using the clipping method. The genetic variation among genotypes was categorized as low (0–10%), medium (10–20%), and high (&gt;20%), whereas the heritability was categorized as low (0-30%), medium (30-60%), and high (&gt;60%). The variability of resistance to <em>Xoo</em> pathotypes, grain yield, and spikelet fertility was low, while the variability of plant height, productive tiller number, filled grain, and total spikelet was medium, and the variability of unfilled grain number was high. The 29 varieties  were categorized as superior based on their agronomic traits or resistance to <em>Xoo</em> pathotypes. In conclusion, Batutegi and Fatmawati were superior in the total spikelet number, while Rojolele and Inpari 2 were supreme in the thousand-grain weight. Dodokan had a very short maturity, and Inpari 24, Conde, Kalimas, Angke, Inpari 17, and Inpara 8 had the highest resistance to <em>Xoo</em> pathotypes. The study implies that the identified rice superior genotypes could be used as genetic materials to design cross combinations for higher yield potential and BLB resistance varietal improvement.</p>


PLoS ONE ◽  
2021 ◽  
Vol 16 (9) ◽  
pp. e0255470
Author(s):  
Phuong Nguyen Duy ◽  
Dai Tran Lan ◽  
Hang Pham Thu ◽  
Huong Phung Thi Thu ◽  
Ha Nguyen Thanh ◽  
...  

TBR225 is one of the most popular commercial rice varieties in Northern Vietnam. However, this variety is highly susceptible to bacterial leaf blight (BLB), a disease caused by Xanthomonas oryzae pv. oryzae (Xoo) which can lead to important yield losses. OsSWEET14 belongs to the SWEET gene family that encodes sugar transporters. Together with other Clade III members, it behaves as a susceptibility (S) gene whose induction by Asian Xoo Transcription-Activator-Like Effectors (TALEs) is absolutely necessary for disease. In this study, we sought to introduce BLB resistance in the TBR225 elite variety. First, two Vietnamese Xoo strains were shown to up-regulate OsSWEET14 upon TBR225 infection. To investigate if this induction is connected with disease susceptibility, nine TBR225 mutant lines with mutations in the AvrXa7, PthXo3 or TalF TALEs DNA target sequences of the OsSWEET14 promoter were obtained using the CRISPR/Cas9 editing system. Genotyping analysis of T0 and T1 individuals showed that mutations were stably inherited. None of the examined agronomic traits of three transgene-free T2 edited lines were significantly different from those of wild-type TBR225. Importantly, one of these T2 lines, harboring the largest homozygous 6-bp deletion, displayed decreased OsSWEET14 expression as well as a significantly reduced susceptibility to a Vietnamese Xoo strains and complete resistance to another one. Our findings indicate that CRISPR/Cas9 editing conferred an improved BLB resistance to a Vietnamese commercial elite rice variety.


2018 ◽  
Vol 22 (1) ◽  
pp. 27 ◽  
Author(s):  
Fatimah Fatimah ◽  
Joko Prasetiyono ◽  
Aqwin Polosoro ◽  
Mushlihatun Baroya

Rice bacterial leaf blight (BLB) disease caused by Xanthomonas oryzae pv. oryzae (Xoo) affected grain yield and decreasing rice production in rice growing countries. Conde, Indonesian rice variety, exhibits high resistance to most of the Indonesian races of (BLB) and has been used in Indonesia for cultivated rice. This study was aimed to conduct the molecular detection between proximal markers in chromosome 6 and relative expression of Conde rice variety compare to IRBB7 in Xa7 region. The population screening, BLB evaluation and molecular detection around the Xa7 region were conducted. The results showed from the collection of individual recombinants between resistant and susceptible parents narrow the region containing the BTBPOZ domain. The sequence alignment of Xa7LD37 in two resistant and three susceptible cultivars demonstrated a perfect association. The sequence alignment in exon region of Loc_Os06g46240 in Nipponbare, IRBB7, and IR64 identified indel/SNPs in this region leading to nucleotide substitution and frameshift resulting in amino acid change between resistant and susceptible cultivars. It was predicted that Conde revealed the similar gene action with Xa7 gene for BLB that encodes a BTB POZ domain.


2016 ◽  
Vol 5 (2) ◽  
pp. 63 ◽  
Author(s):  
Suparyono Suparyono ◽  
Sudir Sudir ◽  
Suprihanto Suprihanto

At present, bacterial leaf blight of rice caused by Xanthomonas oryzae pv. oryzae is highly damaging to rice production in Indonesia as most of the existing commercial rice varieties are susceptible to the existing  pathotypes of the bacteria. To solve  such problems, varietal rotation should be based on information on the existence and dominance of local pathotypes in a particular rice ecosystem. To obtain this information, a total of 117 isolates of X. oryzae pv. oryzae, collected from West Java, Central Java, and Yogyakarta, were evaluated for their pathotype variation on five differential rice varieties during the dry season of 2000. When disease severity was &lt; 10%, the reaction was classified as resistant (R) and when &gt; 11%, was susceptible (S). The data indicated that 3.42% of the isolates were pathotype III, 12.82% were pathotype IV, and 83.76% were pathotype VIII. In West Java, the bacterial pathotypes III, IV, and VIII were 4.94%, 14.81%, and 80.25%, respectively. In low elevation areas, 4.94%, 9.88%, and 45.68% were pathotypes III, IV, and VIII, respectively and in medium areas, 4.94% were pathotypes IV and 34.57% were pathotype VIII. In Central Java, no pathotype III was found, while pathotypes IV and VIII were as much as 4.52% and 90.48%, respectively. In low elevation areas, no pathotypes III was recovered, and a total of 9.53% and 76.19% were identified as pathotypes IV and VIII, respectively, and in medium areas only pathotype VIII (14.29%) was identified. In Yogyakarta, pathotypes IV and VIII were found. In low elevation areas, 6.67% and 93.33% were pathotypes IV and VIII, respectively and in medium areas, 14.29% and 85.71% were pathotypes IV and VIII, respectively. The data indicated that variation in pathotype composition over different locations was obvious and locally specific resistant varieties to the disease are needed in the management of this important bacterial disease in rice.


2016 ◽  
Vol 17 (2) ◽  
pp. 80 ◽  
Author(s):  
Lina Herlina ◽  
Tiur S. Silitonga

<p>Field Selection on Several Rice Varieties for Resistance to Bacterial Leaf Blight strain IV and VIII. Bacterial leaf blight (BLB) on rice (Oryza sativa) caused by Xanthomonas oryzae pv. oryzae (Xoo) is the major obstruction for rice production. Powerful strategy to control BLB is generally conducted by planting resistant plant. Meanwhile, the main way to explore germplasm as the source of resistance gene is conducted by selection a wide rice varieties. Field selection for resistance to BLB on 150 rice-varieties (BB-Biogen collection) was conducted in 2009 in Cianjur. Three leaves and flag leaves of individual hills at vegetative and flowering stage were inoculated by clipping the leaf tip with scissors which had been connected with a suspension bottle of bacterial cells (109- 1010 cells/ml) of the isolates which represented bacterial groups (strain) IV and VIII, respectively. Each plant was inoculated with one race. Two weeks after inoculation, length of the lesion developed on the inoculated leaf was measured, as an index of severity of infection by BLB. This experiment was treated as Factorial-Randomized Completed Block Design (two factor-with 3 replications, respectively). The resistancyreaction to strain IV and VIII was observed as the variable tested, while the factors measured consists of plant-varieties and two bacterial strains. The results showed that 11 varieties with a resistance-reaction to Xoo strain IV, inwhich 5 varieties poses a consistent resistance-reaction, i.e: Pulu Bolong, Pelopor, Gombal, Barito and Kapuas. While resistancereaction to Xoo strain VIII obtained only one variety : IR42 (score-1), while 17 others showed intermediate resistancy (score-3).</p><p> </p><p><strong>Abstrak</strong></p><p>Penyakit hawar daun bakteri (HDB) yang disebabkan oleh Xanthomonas oryzae pv. oryzae (Xoo) pada padi (Oryza sativa) merupakan faktor pembatas upaya peningkatan produksi padi. Pencarian gen-gen tahan terhadap HDB sangat diperlukan untuk pengendalian penyakit tersebut. Seleksi ketahanan terhadap HDB dilakukan di Cianjur pada MT 2009 terhadap 150 varietas padi koleksi Bank Gen, BB-Biogen. Isolat Xoo yang diuji adalah strain IV dan VIII. Inokulasi dilakukan dua kali, yaitu pada fase vegetatif dan generatif dengan cara menggunting 3-5 cm dari ujung daun dan daun bendera dengan gunting yang telah dihubungkan dengan botol berisi suspensi Xoo strain IV dan VIII (109-1010 sel/ml). Rancangan percobaan yang digunakan dalam penelitian ini adalah acak kelompok faktorial dengan tiga ulangan. Sebagai varietas pembanding tahan digunakan IRBB7 dan pembanding rentan varietas Kencana Bali. Reaksi ketahanan tertinggi terhadap Xoo strain IV ditunjukkan oleh 11 varietas terpilih dengan reaksi agak tahan, lima varietas di antaranya menunjukkan reaksi yang konsisten agak tahan, yaitu varietas Pulu Bolong, Pelopor, Gombal, Barito, dan Kapuas. Reaksi &amp;lsquo;tahan&amp;rsquo; terhadap Xoo strain VIII ditunjukkan oleh satu varietas introduksi IR42. Untuk varietas terpilih dengan reaksi &amp;lsquo;agak tahan&amp;rsquo; terdapat 17 varietas.</p>


2021 ◽  
Vol 22 (10) ◽  
Author(s):  
SITI YURIYAH ◽  
DEDY DARNAEDI ◽  
TATANG MITRA SETIA ◽  
GUT WINDARSIH ◽  
Dwinita Wikan Utami

Abstract. Yuriyah S, Darnaedi D, Setia TM, Windarsih G, Utami DW. 2021. Phenotype and genotype variability of interspecific rice lines related to bacterial leaf blight resistance (Xanthomonas oryzae pv. oryzae) character. Biodiversitas 22: 4123-4130. Wild rice species are the source of the gene pool for rice genetic diversity. The cross-species crosses (interspecific crosses) play an important role in breeding, namely in terms of expanding the diversity of desirable characters, such as disease resistance and improvement in yield potential. Currently, the genes from wild rice species have been successfully introgressed into cultivated rice so that they can overcome the rice production constraints, including the introgression of genes for the bacterial leaf blight (BLB) resistance. The purpose of this study was to analyze the variability of phenotype and genotype performance of lines derived from wild rice species for the character of resistance to BLB disease. A total of 33 selected backcross lines derived from wild rice species of O. rufipogon and O. glaberrima as the donor parents and 2 control varieties (resistant and susceptible to BLB disease), were used in this study. The evaluation of phenotype and genotype of resistance characters to BLB disease was carried out during a vegetative phase of the plant. The resistance evaluation was carried out in a greenhouse, while the genotype performance was analyzed using 4 STS markers linked to Xa4, Xa7, and Xa13 genes. The result of the phenotype evaluation showed that there were variations among the resistance of the tested lines. Three lines derived from a Situ Bagendit/Oryza rufipogon cross were resistant to all BLB races used in the testing. Those three lines indicated to have the allele of the Xa7 resistance gene based on the genotype performance which grouped with the Code variety that had the Xa7 resistance gene.


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