scholarly journals Trichoderma juruarense sp. nov. (Hypocreaceae) a new fungal species from sediments of the Amazonian Juruá River with agricultural potential

2022 ◽  
Author(s):  
Raoni Gwinner ◽  
Thiago F. Sousa ◽  
Sandra B. de Sousa ◽  
Izabel C. Bandeira ◽  
Gleucinei dos S. Castro ◽  
...  
Keyword(s):  
Sequence Data ◽  
Plant Protection ◽  
Sclerotium Rolfsii ◽  
Morphological Characteristics ◽  
Its Region ◽  
Fungal Species ◽  
Morphological Data ◽  
Agricultural Potential ◽  
A New Species

Abstract The species of Trichoderma are the most common fungi to be used as biocontrol agents, and their metabolic arsenal has a wide variety of applications that places this genus among those with the potential to provide biotechnological products. The ubiquitous nature of Trichoderma has favored a rapid increase in the number of described species, and significant efforts have been made towards the taxonomy of Trichoderma in order to improve the accuracy of identification. During a study of cultivable microbiota from the Juruá River, Amazon, Brazil. Isolates with morphological characteristics of the genus Trichoderma were screened for their capacity to control phytopathogens. A total of five Trichoderma isolates were identified using morphological data combined with phylogenetic analysis of the ITS region, and partial sequences of TEF and RPB2. Trichoderma juruarense sp. nov. form a monophyletic clade that is closely related to T. cyanodichotomus, a species that occupies an unresolved position in the Trichoderma taxonomy. T. cyanodichotomus and T. juruarense sp. nov. present an intracellular blue-green pigment in potato dextrose agar (PDA) and differ in conidia and chlamydospores sizes. These data support the proposition of a new species, named here as Trichoderma juruarense. The holotype of T. juruarense INPA0108 presents in vitro inhibition against phytopathogens, such as Colletotrichum siamense (50%), Corynespora cassiicola (43%), Fusarium decemcellulare (61%) and Sclerotium rolfsii (51%), which demonstrates desirable traits that warrant further studies on plant protection. In addition, T. cyanodichotomus and T. juruarense formed a new clade based on the sequence data of the RPB2 gene.

scholarly journals Two new species of Undifilum, fungal endophytes of Astragalus (locoweeds) in the United States

Botany ◽  
2012 ◽  
Vol 90 (9) ◽  
pp. 866-875 ◽  
Author(s):  
Deana L. Baucom ◽  
Marie Romero ◽  
Robert Belfon ◽  
Rebecca Creamer
Keyword(s):  
New Species ◽  
New Mexico ◽  
Random Amplified Polymorphic Dna ◽  
Phylogenetic Analyses ◽  
Fungal Endophytes ◽  
Morphological Characteristics ◽  
Its Region ◽  
The United States ◽  
Neighbor Joining

New species of Undifilum , from locoweeds Astragalus lentiginosus Vitman and Astragalus mollissimus Torr., are described using morphological characteristics and molecular phylogenetic analyses as Undifilum fulvum Baucom & Creamer sp. nov. and Undifilum cinereum Baucom & Creamer sp. nov. Fungi were isolated from dried plants of A. lentiginosus var. araneosus , diphysus , lentiginosus , and wahweapensis collected from Arizona, Oregon, and Utah, USA, and A. mollissimus var. biglovii , earleii , and mollissimus collected from New Mexico, Oklahoma, and Texas, USA. Endophytic fungi from Astragalus locoweeds were compared to Undifilum oxytropis isolates obtained from dried plant material of Oxytropis lamberteii from New Mexico and Oxytropis sericea from Arizona, Colorado, New Mexico, Utah, and Wyoming. Extremely slow growth in vitro was observed for all, and conidia, if present, were ellipsoid with transverse septa. However, in vitro color, growth on four different media, and conidium size differed between fungi from Astragalus spp. and U. oxytropis. Neighbor-joining analyses of internal transcribed spacer (ITS) region and glyceraldehyde-3-phosphate dehydrogenase (GPD) gene sequences revealed that U. fulvum and U. cinereum formed a clade distinct from U. oxytropis. This was supported by neighbor-joining analyses of results generated from random amplified polymorphic DNA (RAPD) fragments using two different primers.

Euphorbia mongoliensis (Euphorbiaceae), a new species from Inner Mongolia, China

Phytotaxa ◽  
2021 ◽  
Vol 501 (1) ◽  
pp. 151-161
Author(s):  
ER-HUAN ZANG ◽  
MING-XU ZHANG ◽  
WEN-LE WANG ◽  
CHUN-HONG ZHANG ◽  
MIN-HUI LI
Keyword(s):  
New Species ◽  
Geographical Distribution ◽  
Inner Mongolia ◽  
Pollen Morphology ◽  
Morphological Characteristics ◽  
Euphorbia Esula ◽  
Morphological Data ◽  
New Taxon ◽  
Flora Of China ◽  
A New Species

In May 2020, a new taxon of Euphorbia, Euphorbiaceae was collected from a dry hillside of Dongsheng District, Ordos City, Inner Mongolia. The morphological characteristics of the specimens analyzed differ from those of the known Euphorbia species from this region; therefore, we suspected this may be a new species, and we set to analyze the ITS2 sequences of some Euphorbia species. The results show that the new taxon belongs to the sect. Esula of Euphorbia subg. Esula. It is similar to Euphorbia esula (description from Flora of China) but does not belong to the same species. Concomitantly, plant morphological data and pollen morphology results show significant differences between the new taxon, E. esula and E. caesia, a finding that supports the delimitation of this new taxon, which is named Euphorbia mongoliensis in accordance with its geographical distribution.

Molecular phylogeny of the Fusarium solani species complex (FSSC) isolated from soils in Iran

Botany ◽  
2014 ◽  
Vol 92 (11) ◽  
pp. 815-820 ◽  
Author(s):  
Khosrow Chehri
Keyword(s):  
Dna Sequences ◽  
Fusarium Solani ◽  
Species Complex ◽  
Agricultural Soils ◽  
Sequence Data ◽  
Morphological Characteristics ◽  
Taxonomic Status ◽  
Its Region ◽  
Phylogenetic Study ◽  
Fusarium Solani Species Complex

Members of Fusarium solani species complex (FSSC) are frequently isolated from soils, food, feeds, trees, and to some extent from humans and other animals. The taxonomic status of these fungi is being revised but no attempt has been made to identify those isolated in Iran, a mountainous country with a high biodiversity. The objective of the present research was to study the phylogenetic diversity of FSSC strains recovered from soils in Iran by analyzing morphological characteristics and DNA sequences. A total of 65 strains belonging to the FSSC were recovered from agricultural soils in western Iran. Based on differences in their morphological characters, 25 strains were selected for phylogenetic analysis employing translation elongation factor-1α (tef1) and internal transcribed spacer (ITS) region sequences. Comparisons of DNA sequence data revealed that all isolates belonged to Fusarium falciforme, Fusarium keratoplasticum, Fusarium petroliphilum, the unnamed species FSSC 5, and unknown species of Fusarium, which represents a new lineage within members of Clade 3. Based on morphological features and phylogenetic study, F. keratoplasticum and F. petroliphilum were reported for the first time in Iran.

scholarly journals When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus

2016 ◽  
Vol 85 (4) ◽  
pp. 387-422 ◽  
Author(s):  
Roberto Arrigoni ◽  
Francesca Benzoni ◽  
Danwei Huang ◽  
Hironobu Fukami ◽  
Chaolun Allen Chen ◽  
...  
Keyword(s):  
New Genus ◽  
Nuclear Dna ◽  
New Caledonia ◽  
Sequence Data ◽  
Intergenic Spacer ◽  
Taxonomic Revision ◽  
Its Region ◽  
Distinct Species ◽  
Morphological Data ◽  
Eastern Australia

The scleractinian family Lobophylliidae is undergoing a major taxonomic revision thanks to the combination of molecular and morphological data. In this study, we investigate the evolutionary relationships and the macro- and micromorphology of six nominal coral species belonging to two of the nine molecular clades of the Lobophylliidae, clades A and B, and of Symphyllia wilsoni, a lobophylliid species analyzed from a molecular point of view for the first time. Sequence data from mitochondrial DNA (COI and the intergenic spacer between COI and l-rRNA), and nuclear DNA (histone H3 and ITS region) are used to generate robust molecular phylogenies and a median-joining haplotype network. Molecular results are strongly in agreement with detailed observations of gross- and fine-scale morphology of skeletons, leading to the formal revision of the genera Micromussa and Homophyllia and the description of two newly discovered zooxanthellate shallow-water species, Micromussa pacifica sp. nov. Benzoni & Arrigoni and Micromussa indiana sp. nov. Benzoni & Arrigoni, and a new genus, Australophyllia gen. nov. Benzoni & Arrigoni. In particular, Acanthastrea lordhowensis and Montastraea multipunctata are moved into Micromussa, A. hillae is synonymized with A. bowerbanki and is transferred to Homophyllia, and a revised diagnosis for both genera is provided. Micromussa pacifica sp. nov. is described from the Gambier Islands with its distribution spanning New Caledonia and eastern Australia. Despite a superficial resemblance with Homophyllia australis, it has distinctive macroand micromorphological septal features. Micromussa indiana sp. nov., previously identified as M. amakusensis, is here described from the Gulf of Aden and the southern Red Sea as a distinct species that is genetically separated from M. amakusensis and is morphologically distinct from the latter due to its smaller corallite size and lower number of septa. Finally, molecular trees show that S. wilsoni is closely related, but molecularly separated from clades A and B, and, also based on a unique combination of corallite and sub-corallite characters, the species is moved into Australophyllia gen. nov. These findings confirm the need for using both genetic and morphological datasets for the ongoing taxonomic revision of scleractinian corals.

scholarly journals A new species of the blind cave gudgeon Milyeringa (Pisces: Gobioidei, Eleotridae) from Barrow Island, Western Australia, with a redescription of M. veritas Whitley

Zootaxa ◽  
2013 ◽  
Vol 3616 (2) ◽  
pp. 135-150 ◽  
Author(s):  
HELEN K. LARSON ◽  
RALPH FOSTER ◽  
WILLIAM F. HUMPHREYS ◽  
MARK I. STEVENS
Keyword(s):  
New Species ◽  
Dna Sequence ◽  
Western Australia ◽  
Sequence Data ◽  
Morphological Data ◽  
Unique Form ◽  
Dna Sequence Data ◽  
The Third ◽  
Blind Cave ◽  
A New Species

A new species of the eyeless eleotrid genus Milyeringa is described from wells sunk on Barrow Island, Western Australia. Milyeringa justitia n. sp. is the third species of the genus to be named. Morphological data and cytochrome c oxidase subunit I (COI) DNA sequence data from a wide sample of localities at which the genus occurs was used to evaluate relationships and species limits. Milyeringa veritas is redescribed, and M. brooksi is synonymised with M. veritas. The unique form and ecology of these fishes, plus the threats to their survival, warrants immediate and continuing attention in management.

scholarly journals Two new Lycoperdon species collected from Korea: L. albiperidium and L. subperlatum spp. nov.

Phytotaxa ◽  
2016 ◽  
Vol 260 (2) ◽  
pp. 101 ◽  
Author(s):  
CHANG SUN KIM ◽  
JONG WON JO ◽  
YOUNG-NAM KWAG ◽  
GI-HO SUNG ◽  
JAE-GU HAN ◽  
...  
Keyword(s):  
Sequence Data ◽  
Elongation Factor ◽  
Morphological Characteristics ◽  
Its Region ◽  
Its Sequences ◽  
Translation Elongation ◽  
Protein Coding ◽  
Dna Sequence Data ◽  
Coding Regions ◽  
Elongation Factor 1 Alpha

Thirty-four Lycoperdon specimens from Korea were examined with the internal transcribed spacer (ITS) region of ribosomal DNA sequence data. The result of the ITS sequences phylogenetic analysis indicated that the Korean specimens represented nine different species. To confirm the taxonomic position of these species, we conducted an intensive morphological investigation, and additional phylogenetic investigation of the protein coding regions RNA polymerase subunit II (RPB2) and translation elongation factor 1-alpha (TEF1). We discovered two new species (L. albiperidium and L. subperlatum) and one (L. ericaeum) newly discovered in Korea. Lycoperdon albiperidium is closely related to L. ericaeum based on ITS, RPB2 and TEF1 sequence data, but these species were distinguishable by morphological characteristics, especially the shape of the basidiocarps, the diameter of the eucapillitial threads and the size of the basidospores. Lycoperdon subperlatum is quite similar to the European and American L. perlatum based on morphological characteristics. However, L. subperlatum is clearly distinct from European and American L. perlatum based on ITS, RPB2 and TEF1 sequence data, and somewhat differs from them in macro- and microscopic characteristics. Based on morphological characteristics, L. ericaeum is related to L. subumbrinum and L. lividum but it is distinguishable by the presence of fragile, eucapillitial threads, the diameters of the threads and ITS sequences. Here, we describe four Lycoperdon species collected in Korea.

A new species of Usnea (Parmeliaceae, lichenized Ascomycota) from Southwest China

Phytotaxa ◽  
2020 ◽  
Vol 472 (1) ◽  
pp. 23-32
Author(s):  
LIU-FU HAN ◽  
YU-HUAN XIE ◽  
HUAN-BING ZHANG ◽  
LI-SI LI ◽  
SHOU-YU GUO
Keyword(s):  
New Species ◽  
Southwest China ◽  
Sequence Data ◽  
Morphological Characteristics ◽  
Its Sequence ◽  
Nrdna Its ◽  
A New Species

During the study of Usnea from China, we identified and illustrated a new species, Usnea sulphuridiscoidea S. Y. Guo & L. F. Han from the Ailaoshan Mountain of Southwest China, based on morphological characteristics and nrDNA ITS sequence data. This new species can be distinguished morphologically from other apotheciate members of Usnea by the special lateral apothecia with sulphur disc, the inflated branches with glossy surface and numerous papillae as well as many fibrils, meanwhile lacking pseudocyphellae and soralia. The nrDNA ITS sequence data supported the recognition of the new species.

New taxa in Drosanthemum and a new genus in Drosanthemeae (Ruschioideae, Aizoaceae)

Phytotaxa ◽  
2020 ◽  
Vol 459 (2) ◽  
pp. 139-154
Author(s):  
CORNELIA KLAK ◽  
PAVEL HANÁČEK ◽  
ODETTE CURTIS-SCOTT ◽  
ANSO LE ROUX ◽  
PETER V. BRUYNS
Keyword(s):  
South Africa ◽  
New Species ◽  
New Genus ◽  
Sequence Data ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Western Cape ◽  
Monotypic Genus ◽  
Nomenclatural Change ◽  
A New Species

A phylogeny of all nine subgenera of Drosanthemum, based on chloroplast sequence-data, is presented. The results confirm some previously published facts, e.g. that D. zygophylloides is sister to Drosanthemum. We propose to treat this species as a new monotypic genus, Lemonanthemum, which differs from Drosanthemum in features of the leaves and fruit-stalks. In Drosanthemum s.s., the small subg. Quadrata, characterized by 4-locular fruits, is highly supported as sister to the remainder of Drosanthemum (where fruits are 5-locular). Further, our data support the transfer of Delosperma pubipetalum to Drosanthemum (where a nomenclatural change is also made). The pubescent petals, 5-locular fruits with narrow covering membranes and downward-pointing hair-like papillae on the branches suggest that D. pubipetalum is close to D. papillatum and belongs to subg. Quastea. Another species, D. badspoortense, which had been placed in D. subg. Quastea on account of its narrow covering membranes, is shown to belong to Delosperma and also lacks the unique structure of the fruit-stalk of Drosanthemum. In addition, a new species, D. overbergense, is described from disjunct patches of remnant renosterveld within the Overberg and near Albertinia, in the Western Cape of South Africa. Morphological characteristics suggest that this species belongs to subg. Xamera, but this was not corroborated by our molecular data. Finally, a new name—Drosanthemum calcareum—is proposed for the illegitimate D. intermedium and a lectotype (at BOL) is designated for D. pubipetalum. The lectotypification of D. badspoortense is also proposed.

Pilea nonggangensis (Urticaceae), a new species from Guangxi, China

Phytotaxa ◽  
2017 ◽  
Vol 313 (1) ◽  
pp. 130 ◽  
Author(s):  
LONG-FEI FU ◽  
SHI-LIAN HUANG ◽  
ALEX K. MONRO ◽  
YING LIU ◽  
FANG WEN ◽  
...  
Keyword(s):  
New Species ◽  
Internal Transcribed Spacer ◽  
Sequence Data ◽  
Species Conservation ◽  
Its Region ◽  
Systematic Position ◽  
Molecular Evidence ◽  
Conservation Assessment ◽  
Dna Sequence Data ◽  
A New Species

Pilea nonggangensis Y. G. Wei, L. F. Fu & A. K. Monro, a new species from Guangxi, China is described and illustrated. The new species is morphologically most similar to P. basicordata from which it differs by being dioecious, having peltate leaf blades, membranous stipules, paired inflorescences and larger bracts. Nuclear ribosomal internal transcribed spacer (ITS) region and plastid trnL-F intron spacer (trnL-F) DNA sequence data from the new species and 20 local congeneric species are used to resolve the systematic position of the new species within Pilea. Despite vastly different morphology the molecular evidence suggests that P. nonggangensis is most closely related to P. pseudonotata. A Global Species Conservation Assessment classifies P. nonggangensis as Vulnerable (VU).

A new and endangered species of Iochroma (Solanaceae) from the cloud forests of central Peru and its phylogenetic position in Iochrominae

Phytotaxa ◽  
2015 ◽  
Vol 227 (2) ◽  
pp. 147 ◽  
Author(s):  
Marco Antonio Cueva Manchego ◽  
STACEY DEWITT SMITH ◽  
SEGUNDO LEIVA GONZÁLES
Keyword(s):  
New Species ◽  
Endangered Species ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characteristics ◽  
Phylogenetic Position ◽  
Cloud Forests ◽  
Dna Sequence Data ◽  
A New Species ◽  
Iucn Criteria

Iochroma amicorum M. Cueva, S. D. Sm. & S. Leiva (Solanaceae), a new species from cloud forests of Central Peru, is described and illustrated. Phylogenetic analyses of DNA sequence data suggest that Iochroma amicorum is closely related to I. nitidum, I. umbellatum, I. grandiflorum and I. tingoanum, which collectively form the “U” clade of Iochrominae. Certain morphological characteristics of calyx and corolla as well as the type of habitat appear to be common in species of this clade. Iochroma amicorum is easily distinguished from other members of the “U” clade by its campanulate or funnel-shaped corolla with short and slightly reflexed lobes, the presence of an expanded stapet at the point of filament insertion with short lateral extensions united to the corolla, and its globose usually white fruits with tinges of purple at the base. Distribution, phenology and are discussed together with the position of the new species in Iochrominae. Iochroma amicorum is assessed as Endangered according to IUCN criteria B1ab (i, iii)

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