scholarly journals Brassicaceous roots as an unexpected diversity hot-spot of helotialean endophytes

2020 ◽  
Author(s):  
Jose G Macia-Vicente ◽  
Meike Piepenbring ◽  
Ondřej Koukol
Keyword(s):  
New Species ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Hot Spot ◽  
Morphological Characters ◽  
Wide Distribution ◽  
Phenotypic Traits ◽  
Ancestral State ◽  
Sequence Comparisons ◽  
Distribution Ranges

Abstract A high number of fungal strains were isolated from roots of Brassicaceae species collected across western and southern Europe, resulting in an unexpectedly rich collection of Cadophora species. These isolates enable us to present a new and comprehensive view of the ecological, morphological, and phylogenetic traits of root-inhabiting members of this helotialean genus. We provide phylogenetic placement of all of our isolates based on a four-gene dataset, analyze their phenotypic traits in relation to their phylogenetic relationships, and infer the potential distribution ranges of the species by sequence comparisons with available databases. We consider seven well supported phylogenetic lineages as species new to science. Six further lineages probably also represent new species but remain undescribed due to the lack of diagnostic morphological characters. Our results show that Cadophora , as currently circumscribed, is paraphyletic and encompasses a broad spectrum of morphologies and lifestyles. Among the new species, only two ( C. ferruginea and C. constrictospora ) form phialides and conidia typical of Cadophora , three species ( C. echinata , C. gamsii and C. variabilis ) produce chains of swollen hyphal segments that may function as holoblastic conidia, and one species ( C. fascicularis ) produces chains of holoblastic ramoconidia and conidia. Ancestral state reconstruction analysis suggests that phialidic conidiogenesis evolved several times in Cadophora sensu lato from a putatively holoblastic common ancestor. Most Cadophora lineages are rare as estimated from the availability of sequence data, in spite of having relatively wide distribution ranges, whereas five lineages may represent endemic relationships given their restricted distributions. Our dataset, probably the most comprehensive available for Cadophora , nevertheless shows knowledge gaps concerning the phylogenetic relationships within this genus and highlights a need for further investigation.

scholarly journals Brassicaceous roots as an unexpected diversity hot-spot of helotialean endophytes

2020 ◽  
Author(s):  
Jose G Macia-Vicente ◽  
Meike Piepenbring ◽  
Ondřej Koukol
Keyword(s):  
New Species ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Hot Spot ◽  
Morphological Characters ◽  
Wide Distribution ◽  
Phenotypic Traits ◽  
Ancestral State ◽  
Sequence Comparisons ◽  
Distribution Ranges

Abstract A high number of fungal strains were isolated from roots of Brassicaceae species all over Europe, resulting in an unexpectedly rich collection of Cadophora species. These isolates enable us to present a new and comprehensive view of the ecological, morphological, and phylogenetic traits of root-inhabiting members of this helotialean genus. We provide phylogenetic placement of all of our isolates based on a four-gene dataset, analyze their phenotypic traits in relation to their phylogenetic relationships, and infer the potential distribution ranges of the species by sequence comparisons with available databases. We consider seven well supported phylogenetic lineages as species new to science. Six further lineages probably also represent new species but remain undescribed due to the lack of diagnostic morphological characters. Our results show that Cadophora, as currently circumscribed, is paraphyletic and encompasses a broad spectrum of morphologies and lifestyles. Among the new species, only two (C. ferruginea and C. constrictospora) form phialides and conidia typical of Cadophora, three species (C. echinata, C. gamsii and C. variabilis) produce chains of swollen hyphal segments that may function as holoblastic conidia, and one species (C. fascicularis) produces chains of holoblastic ramoconidia and conidia. Ancestral state reconstruction analysis suggests that phialidic conidiogenesis evolved several times in Cadophora sensu lato from a putatively holoblastic common ancestor. Most Cadophora lineages are rare as estimated from the availability of sequence data, in spite of having relatively wide distribution ranges, whereas five lineages may represent endemic relationships given their restricted distributions. Our dataset, probably the most comprehensive available for Cadophora, nevertheless shows knowledge gaps concerning the phylogenetic relationships within this genus and highlights a need for further investigation.

Phylogeny and evolution of the genus Ctenocolum Kingsolver & Whitehead (Coleoptera, Chrysomelidae, Bruchinae), with the description of three new species

2018 ◽  
Vol 50 (1) ◽  
pp. 1-35
Author(s):  
Daiara Manfio ◽  
Isaac Reis Jorge ◽  
Gael J. Kergoat ◽  
Cibele Stramare Ribeiro-Costa
Keyword(s):  
New Species ◽  
Phylogenetic Relationships ◽  
Morphological Characters ◽  
Type Locality ◽  
Ancestral State ◽  
Dorsal Process ◽  
Species Groups ◽  
Three New Species ◽  
Phylogeny And Evolution ◽  
State Estimations

The seed beetle genus Ctenocolum Kingsolver & Whitehead is peculiar because its preferred host Lonchocharpus Kunth (Fabaceae) is not preyed upon by other bruchine species. This study investigates the phylogenetic relationships and evolution of this genus and of its species groups, while providing the description of three new species and of the male of C. biolleyi Kingsolver & Whitehead. To infer phylogenetic relationships, a character matrix of 40 morphological characters was assembled and analysed using both parsimony and Bayesian inference. Ancestral state estimations of host plant use and biogeography analyses were also performed. A total of 22 species were examined: 16 Ctenocolum species (including the three new ones) and six outgroup bruchine species (from genera Caryedes Hummel, Meibomeus Bridwell, Pygiopachymerus Pic and Pachymerus Thunberg). All resulting trees support the monophyly of the genus Ctenocolum. Three synapomorphies characterize the genus: (i) head with frontal carina enlarged at base, (ii) male pygidium truncated apically, and (iii) lateral lobes of tegmen with dorsal process. The two known species groups are also recovered monophyletic in the parsimony analyses. The following three species are described: Ctenocolum inmaculatus Manfio & Ribeiro-Costa sp. nov. (Type locality: Venezuela, Guarico), which belongs to the group tuberculatum; Ctenocolum nigronotus Manfio & Ribeiro-Costa sp. nov. (Type locality: Porto Rico, Mayaguez) and C. pallidus Manfio & Ribeiro-Costa sp. nov. (Type locality: Republic of Guyana), which belong to the group podagricus. Finally, we present colored illustrations of dorsal patterns and male genitalia for these three new species and C. biolleyi in addition to an updated key for the genus Ctenocolum.

Two new species of the genus Flavoperla (Plecoptera: Perlidae) from Guangxi, China

Zootaxa ◽  
2021 ◽  
Vol 5032 (2) ◽  
pp. 247-261
Author(s):  
RAORAO MO ◽  
JINJUN CAO ◽  
GUOQUAN WANG ◽  
WEIHAI LI ◽  
DÁVID MURÁNYI
Keyword(s):  
New Species ◽  
Dna Sequence ◽  
Southern China ◽  
Morphological Characters ◽  
Sequence Comparisons ◽  
Autonomous Region ◽  
Guangxi Zhuang Autonomous Region ◽  
Taxonomic Relationships ◽  
Two New Species

Two new species, Flavoperla retusata Mo, Li & Wang, sp. nov. and F. yangi Mo, Li & Murányi, sp. nov. are proposed from the Guangxi Zhuang Autonomous Region of southern China. Distinctness of the new species is based on morphological characters and DNA sequence comparisons with their closest known relative, F. galerispina Mo, Wang & Li, 2020. The taxonomic relationships of the two new species and related congeners are discussed.  

Phylogeny of Palaearctic Pharyngodonidae parasite species of Testudinidae: a morphological approach

2003 ◽  
Vol 81 (11) ◽  
pp. 1885-1893 ◽  
Author(s):  
Salah Bouamer ◽  
Serge Morand
Keyword(s):  
Phylogenetic Relationships ◽  
Type Species ◽  
Parasite Species ◽  
Morphological Characters ◽  
Monophyletic Group ◽  
Ancestral State ◽  
Morphological Approach ◽  
Species Descriptions

The phylogenetic relationships of 23 oxyurid species from five genera (21 parasite species of the Palaearctic Testudinidae, 1 parasite species of Uromastix acanthinurus Bell, 1825 from Algeria, and 1 parasite species of Cteno sa ura pectinata (Wiegmann, 1834) from Mexico) were investigated using 30 morphological characters obtained from species descriptions. The nonweighted analysis produced one shortest tree. All species of the ingroup form a monophyletic group and the oxyurid species of Testudinidae form a monophyletic group. The type species of the genus Alaeuris Thapar, 1925 is the basal member of the species parasitizing Testudinidae. The analysis confirms the monophyly of the genus Thaparia Ortlepp, 1933, whereas the genera Mehdiella Seurat, 1918 and Tachygonetria Wedl, 1862 are considered paraphyletic groups. The large diversification in the genus Tachygonetria is linked to their position in the host caecum. The ancestral state is in the paramucous and the derived state is in the centre of the caecum. This suggests that recent speciation in the group occurs in the centre of the caecum.

scholarly journals Understanding the evolution of phenotypical characters in the Micarea prasina group (Pilocarpaceae) and descriptions of six new species within the group

MycoKeys ◽  
2019 ◽  
Vol 57 ◽  
pp. 1-30
Author(s):  
Beata Guzow-Krzemińska ◽  
Emmanuël Sérusiaux ◽  
Pieter P. G. van den Boom ◽  
A. Maarten Brand ◽  
Annina Launis ◽  
...  
Keyword(s):  
New Species ◽  
Secondary Metabolites ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Its Rdna ◽  
Ancestral State ◽  
Secondary Substances ◽  
Gyrophoric Acid

Six new Micarea species are described from Europe. Phylogenetic analyses, based on three loci, i.e. mtSSU rDNA, Mcm7 and ITS rDNA and ancestral state reconstructions, were used to evaluate infra-group divisions and the role of secondary metabolites and selected morphological characters on the taxonomy in the M.prasina group. Two main lineages were found within the group. The Micareamicrococca clade consists of twelve species, including the long-known M.micrococca and the newly described M.microsorediata, M.nigra and M.pauli. Within this clade, most species produce methoxymicareic acid, with the exceptions of M.levicula and M.viridileprosa producing gyrophoric acid. The M.prasina clade includes the newly described M.azorica closely related to M.prasina s.str., M.aeruginoprasina sp. nov. and M.isidioprasina sp. nov. The species within this clade are characterised by the production of micareic acid, with the exception of M.herbarum which lacks any detectable substances and M.subviridescens that produces prasinic acid. Based on our reconstructions, it was concluded that the ancestor of the M.prasina group probably had a thallus consisting of goniocysts, which were lost several times during evolution, while isidia and soredia evolved independently at multiple times. Our research supported the view that the ancestor of M.prasina group did not produce any secondary substances, but they were gained independently in different lineages, such as methoxymicareic acid which is restricted to M.micrococca and allied species or micareic acid present in the M.prasina clade.

scholarly journals Pyrenochaetopsis kuksensis (Pyrenochaetopsidaceae), a new species associated with an ornamental boxwood in the Czech Republic

Phytotaxa ◽  
2021 ◽  
Vol 498 (3) ◽  
pp. 177-185
Author(s):  
MILAN ŠPETÍK ◽  
AKILA BERRAF-TEBBAL ◽  
ROBERT POKLUDA ◽  
ALEŠ EICHMEIER
Keyword(s):  
Czech Republic ◽  
New Species ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
New Taxon ◽  
The Czech Republic ◽  
Buxus Sempervirens ◽  
Fungal Microbiome ◽  
A New Species

During the investigation of fungal microbiome associated with boxwood in the Czech Republic, samples from Buxus sempervirens L. (Buxaceae) plants were collected and used for isolation. Two fungal strains were proposed as a new species Pyrenochaetopsis kuksensis based on morphology as well as phylogenetic analyses of ITS, LSU, rpb2, and tub2 sequence data. Detailed descriptions and phylogenetic relationships of the new taxon are provided.

New species of Crella (Pytheas) Topsent, 1890 and Crellomima Rezvoi, 1925 (Crellidae, Poecilosclerida, Demospongiae) from Chilean shallow and Argentinean deep waters, with a synthesis on the known phylogenetic relationships of crellid sponges

Zootaxa ◽  
2021 ◽  
Vol 5052 (3) ◽  
pp. 353-379
Author(s):  
JULIO C.C. FERNANDEZ ◽  
MARIANELA GASTALDI ◽  
GERMÁN ZAPATA-HERNÁNDEZ ◽  
LUIS M. PARDO ◽  
FABIANO L. THOMPSON ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Relationships ◽  
Morphological Characters ◽  
Molecular Data ◽  
Southern Chile ◽  
Deep Waters ◽  
Molecular Phylogenetic ◽  
Molecular Phylogenies ◽  
Taxonomic Studies ◽  
Phylogenetic Affinities

Here, we describe four new species of Crellidae Dendy, 1922 and discuss characters and relationships from published molecular phylogenies including crellid sponges. New species proposed are Crella (Pytheas) chiloensis Fernandez, Gastaldi, Pardo & Hajdu, sp. nov., from southern Chile (15 m depth), C. (P.) desventuradae Fernandez, Gastaldi, Zapata-Hernández & Hajdu, sp. nov., from Desventuradas Archipelago (10–20 m depth), Crella (P.) santacruzae Fernandez, Gastaldi, Thompson & Hajdu, sp. nov., from deep waters off Argentina (750 m depth) and Crellomima sigmatifera Fernandez, Gastaldi & Hajdu, sp. nov., from the Chilean fjords region (ca. 20 m depth). These new species are set apart from each other and from known species mainly due to aspects of their spiculation. Chelae microscleres and acanthostyles supply characters that might be used to infer phylogenetic relationships and to verify the monophyly of Crella Gray, 1867 and Crellidae, which has seemingly been contradicted by preliminary molecular data available in the systematics’ literature. Our own interpretation of phylogenetic affinities, in the light of morphological characters from previous taxonomic studies, argues for a classification reassessment of materials (vouchers) included in these molecular phylogenies, especially in the case of Crella incrustans (Carter, 1885). We argue that currently available molecular phylogenetic outcomes for crellid sponges are not supportive of the polyphyly of Crella and Crellidae.  

scholarly journals New species in Dictyosporium, new combinations in Dictyocheirospora and an updated backbone tree for Dictyosporiaceae

MycoKeys ◽  
2018 ◽  
Vol 36 ◽  
pp. 83-105 ◽  
Author(s):  
Jing Yang ◽  
Jian-Kui Liu ◽  
Kevin D. Hyde ◽  
E.B. Gareth Jones ◽  
Zuo-Yi Liu
Keyword(s):  
New Species ◽  
New Taxa ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Freshwater Fungi ◽  
New Combinations ◽  
The Family ◽  
Two New Species ◽  
Backbone Tree

A survey of freshwater fungi on submerged wood in China and Thailand resulted in the collection of three species in Dictyocheirospora and four species in Dictyosporium including two new species in the latter genus. Morphological characters and phylogenetic analyses based on ITS, LSU and TEF1α sequence data support their placement in Dictyocheirospora and Dictyosporium (Dothideomycetes). An updated backbone tree is provided for the family Dothideomycetes. Descriptions and illustrations of the new taxa and re-collections are provided. Four new combinations are proposed for Dictyocheirospora.

A new species of Bent-toed Gecko (Squamata, Gekkonidae, Cyrtodactylus) from the Shan Plateau in eastern Myanmar (Burma)

Zootaxa ◽  
2019 ◽  
Vol 4624 (3) ◽  
pp. 301-321 ◽  
Author(s):  
L. LEE GRISMER ◽  
PERRY L. JR. WOOD ◽  
EVAN S. H. QUAH ◽  
MYINT KYAW THURA ◽  
JAMIE R. OAKS ◽  
...  
Keyword(s):  
New Species ◽  
Hot Spot ◽  
Mitochondrial Gene ◽  
Sequence Divergence ◽  
Morphological Characters ◽  
Color Pattern ◽  
Pairwise Sequence Divergence ◽  
Taxonomic Analysis ◽  
A New Species ◽  
Karst Habitats

An integrative taxonomic analysis of the Cyrtodactylus linnwayensis group of the Shan Plateau recovered two new populations from isolated karst habitats near Pinlaung Town, Shan State as a new species, C. pinlaungensis sp. nov. Cyrtodactylus pinlaungensis sp. nov. is most closely related to a clade comprising C. linnwayensis and C. ywanganensis from the western edge of the Shan Plateau approximately 90 km to the northwest. Cyrtodactylus pinlaungensis sp. nov. can be distinguished from all members of the C. linnwayensis group by a number of statistically different morphological characters, discrete color pattern differences, and its heavy tuberculation. It also bears an uncorrected pairwise sequence divergence of 5.0–7.6% from all other species combined based on the mitochondrial gene ND2 and its flanking tRNAs. The discovery of this new species on the Shan Plateau continues to underscore the fact that this region is rapidly emerging as a herpetological diversity hot-spot for Myanmar. 

Redescriptions of Pugettia quadridens (De Haan, 1837) and P. intermedia Sakai, 1938 (Crustacea: Brachyura: Epialtidae) with description of a new species

Zootaxa ◽  
2019 ◽  
Vol 4672 (1) ◽  
pp. 1-68
Author(s):  
NAOYA OHTSUCHI ◽  
TOMOHIKO KAWAMURA
Keyword(s):  
New Species ◽  
Sexual Dimorphism ◽  
Morphological Characters ◽  
Sensu Stricto ◽  
Considerable Variability ◽  
Local Variant ◽  
Distribution Ranges ◽  
Northeast Asian ◽  
Orbital Region ◽  
A New Species

Pugettia quadridens (De Haan, 1837) and its closely similar congener, P. intermedia Sakai, 1938, are redescribed and illustrated and their possible infraspecific variations related to sexual, ontogenetic, and environmental differences are discussed. As a result, a new species, Pugettia ferox, which had long been believed to be a local variant of P. quadridens sensu lato in the northeast Japan, is described. Despite moderate sexual dimorphism and considerable variability related to their ontogeny, the three species can be distinguished from each other by the combination of various morphological characters including the structure of the orbital region and male first gonopods. The patterns of ontogenetic morphological and morphometric changes in the chelipeds, gonopods, and pleons are also differentiated among the three species. The updated distribution ranges of three species greatly overlap in the northeast Asian waters, although P. quadridens sensu stricto is distributed more southward than P. ferox n. sp.. Distinguishing characters between P. quadridens s.s. and P. pellucens Rathbun, 1932, and between P. intermedia and P. vulgaris Ohtsuchi, Kawamura & Takeda, 2014, are revised. 

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