scholarly journals Leaf to panicle ratio (LPR): a new physiological trait for rice plant architecture based on deep learning

2020 ◽  
Author(s):  
Zongfeng Yang ◽  
Shang Gao ◽  
Feng Xiao ◽  
Ganghua Li ◽  
Yangfeng Ding ◽  
...  
Keyword(s):  
Deep Learning ◽  
High Throughput ◽  
Method Development ◽  
Field Experiments ◽  
Elevation Angle ◽  
Field Conditions ◽  
Detection Accuracy ◽  
Genotypic Differences ◽  
Data Set ◽  
Source And Sink

Abstract Background: Identification and characterization of new traits with a sound physiological foundation for crop breeding and management is one of the primary objectives for crop physiology. New technological advances in high throughput phenotyping have strengthened the power of physiological breeding. Methods for data mining of the big data acquired by various phenotyping platforms are developed, among which deep learning is used in image data analysis to explore spatial and temporal information concerning crop growth and development. However, method development is still necessary to enable simultaneous extraction of both leaf and panicle data from the complex field backgrounds, as required by the breeder for the adoption of physiological strategies to balance source and sink for yield improvement.Results: We applied a deep learning approach to accurately extract leaf and panicle data and subsequently developed the procedure of GvCrop to calculate the leaf to panicle ratio (LPR) of rice populations during grain filling. Images of the training data set were captured in the field experiments, with large variations in camera shooting angle, the elevation angle and the azimuth angle of the sun, rice genotype, and plant phenological stages. Accurately labeled by manually annotating all the panicle and leaf regions, the resulting dataset were used to train FPN-Mask models, consisting of a backbone network and a task-specific sub-network. The model with the highest accuracy is then selected to study the variations in LPR among 192 rice germplasms and among agronomical practices. Despite the challenging field conditions, FPN-Mask models achieved a high detection accuracy, with Pixel Accuracy being 0.99 for panicles and 0.98 for leaves. The calculated LPRs showed large spatial and temporal variations as well as genotypic differences. Conclusion: Deep learning techniques can achieve high accuracy in simultaneously detecting panicle and leaf data from complex rice field images. The proposed FPN-Mask model is applicable to detect and quantify crop performance under field conditions. The proposed trait of LPR should provide a high throughput protocol for breeders to select superior rice cultivars as well as for agronomists to precisely manage field crops that have a good balance of source and sink.

scholarly journals Leaf to panicle ratio (LPR): a new physiological trait indicative of source and sink relation in japonica rice based on deep learning

2020 ◽  
Author(s):  
Zongfeng Yang ◽  
Shang Gao ◽  
Feng Xiao ◽  
Ganghua Li ◽  
Yangfeng Ding ◽  
...  
Keyword(s):  
Deep Learning ◽  
Field Experiments ◽  
Elevation Angle ◽  
Temporal Variations ◽  
Field Conditions ◽  
Training Dataset ◽  
Detection Accuracy ◽  
Genotypic Differences ◽  
Japonica Rice ◽  
Source And Sink

Abstract Background : Identification and characterization of new traits with a sound physiological foundation is essential for crop breeding and management. Deep learning has been widely used in image data analysis to explore spatial and temporal information on crop growth and development, thus strengthening the power of the identification of physiological traits. This study aims to develop a novel trait that indicates source and sink relation in japonica rice based on deep learning. Results : We applied a deep learning approach to accurately segment leaf and panicle and subsequently developed the procedure of GvCrop to calculate the leaf to panicle ratio (LPR) of rice populations during grain filling. Images of the training dataset were captured in the field experiments, with large variations in camera shooting angle, the elevation angle and the azimuth angle of the sun, rice genotype, and plant phenological stages. Accurately labeled by manually annotating all the panicle and leaf regions, the resulting dataset were used to train FPN-Mask (Feature Pyramid Network Mask) models, consisting of a backbone network and a task-specific sub-network. The model with the highest accuracy is then selected to study the variations in LPR among 192 rice germplasms and among agronomical practices. Despite the challenging field conditions, FPN-Mask models achieved a high detection accuracy, with Pixel Accuracy being 0.99 for panicles and 0.98 for leaves. The calculated LPRs showed large spatial and temporal variations as well as genotypic differences. Conclusion : Deep learning techniques can achieve high accuracy in simultaneously detecting panicle and leaf data from complex rice field images. The proposed FPN-Mask model is applicable for detecting and quantifying crop performance under field conditions. The newly identified trait of LPR should provide a high throughput protocol for breeders to select superior rice cultivars as well as for agronomists to precisely manage field crops that have a good balance of source and sink.

scholarly journals Leaf to panicle ratio (LPR): a new physiological trait indicative of source and sink relation in japonica rice based on deep learning

2020 ◽  
Author(s):  
Zongfeng Yang ◽  
Shang Gao ◽  
Feng Xiao ◽  
Ganghua Li ◽  
Yangfeng Ding ◽  
...  
Keyword(s):  
Deep Learning ◽  
Field Experiments ◽  
Elevation Angle ◽  
Grain Filling ◽  
Temporal Variations ◽  
Field Conditions ◽  
Training Dataset ◽  
Detection Accuracy ◽  
Japonica Rice ◽  
Source And Sink

Abstract Background : Identification and characterization of new traits with a sound physiological foundation is essential for crop breeding and management. Deep learning has been widely used in image data analysis to explore spatial and temporal information on crop growth and development, thus strengthening the power of the identification of physiological traits. This study aims to develop a novel trait that indicates source and sink relation in japonica rice based on deep learning.Results : We applied a deep learning approach to accurately segment leaf and panicle and subsequently developed the procedure of GvCrop to calculate the leaf to panicle ratio (LPR) of rice populations during grain filling. Images of the training dataset were captured in the field experiments, with large variations in camera shooting angle, the elevation angle and the azimuth angle of the sun, rice genotype, and plant phenological stages. Accurately labeled by manually annotating all the panicle and leaf regions, the resulting dataset were used to train FPN-Mask (Feature Pyramid Network Mask) models, consisting of a backbone network and a task-specific sub-network. The model with the highest accuracy is then selected to study the variations in LPR among 192 rice germplasms and among agronomical practices. Despite the challenging field conditions, FPN-Mask models achieved a high detection accuracy, with Pixel Accuracy being 0.99 for panicles and 0.98 for leaves. The calculated LPRs showed large spatial and temporal variations as well as genotypic differences.Conclusion : Deep learning techniques can achieve high accuracy in simultaneously detecting panicle and leaf data from complex rice field images. The proposed FPN-Mask model is applicable for detecting and quantifying crop performance under field conditions. The newly identified trait of LPR should provide a high throughput protocol for breeders to select superior rice cultivars as well as for agronomists to precisely manage field crops that have a good balance of source and sink.

Semi supervised inspection algorithm of automatic packaging curve based on deep learning

2021 ◽  
pp. 1-10
Author(s):  
Yong He
Keyword(s):  
Deep Learning ◽  
Supervised Learning ◽  
Optimization Algorithm ◽  
Posterior Probability ◽  
Detection Method ◽  
Detection System ◽  
Experimental Results ◽  
Detection Accuracy ◽  
Data Set ◽  
Packaging Process

The current automatic packaging process is complex, requires high professional knowledge, poor universality, and difficult to apply in multi-objective and complex background. In view of this problem, automatic packaging optimization algorithm has been widely paid attention to. However, the traditional automatic packaging detection accuracy is low, the practicability is poor. Therefore, a semi-supervised detection method of automatic packaging curve based on deep learning and semi-supervised learning is proposed. Deep learning is used to extract features and posterior probability to classify unlabeled data. KDD CUP99 data set was used to verify the accuracy of the algorithm. Experimental results show that this method can effectively improve the performance of automatic packaging curve semi-supervised detection system.

Modeling Abiotic Niches of Crops and Wild Ancestors Using Deep Learning: A Generalized Approach

2019 ◽  
Author(s):  
W. G. Hulleman ◽  
R. A. Vos
Keyword(s):  
Deep Learning ◽  
Species Distribution ◽  
Habitat Suitability ◽  
Species Interactions ◽  
Method Development ◽  
Species Distribution Modeling ◽  
Crop Species ◽  
Data Set ◽  
Important Species ◽  
Distribution Modeling

AbstractIntroductionUnderstanding what interactions and environmental factors shape the geographic distribution of species is one of the fundamental questions in ecology and evolution. Insofar as the focus is on agriculturally important species, insight into this is also of applied importance. Species Distribution Modeling (SDM) comprises a spectrum of approaches for establishing correlative models of species (co-)occurrences and geospatial patterns of abiotic environmental variables.MethodsHere, we contribute to this field by presenting a generalized approach for SDM that utilizes deep learning, which offers some improvements over current methods, and by presenting a case study on the habitat suitability of staple crops and their wild ancestors. The approach we present is implemented in a reusable software toolkit, which we apply to an extensive data set of geo-referenced occurrence records for 52 species and 59 GIS layers. We compare the habitat suitability projections for selected, major crop species with the actual extent of their current cultivation.ResultsOur results show that the approach yields especially plausible projections for species with large numbers of occurrences (>500). For the analysis of such data sets, the toolkit provides a convenient interface for using deep neural networks in SDM, a relatively novel application of deep learning. The toolkit, the data, and the results are available as open source / open access packages.ConclusionsSpecies Distribution Modeling with deep learning is a promising avenue for method development. The niche projections that can be produced are plausible, and the general approach provides great flexibility for incorporating additional data such as species interactions.

scholarly journals Image-based taxonomic classification of bulk biodiversity samples using deep learning and domain adaptation

2021 ◽  
Author(s):  
Tomochika Fujisawa ◽  
Victor Noguerales ◽  
Emmanouil Meramveliotakis ◽  
Anna Papadopoulou ◽  
Alfried P Vogler
Keyword(s):  
Deep Learning ◽  
High Throughput ◽  
Domain Adaptation ◽  
Network Models ◽  
Neural Network Models ◽  
Data Set ◽  
Model Training ◽  
Trained Neural Network ◽  
Domain Transfer

Complex bulk samples of invertebrates from biodiversity surveys present a great challenge for taxonomic identification, especially if obtained from unexplored ecosystems. High-throughput imaging combined with machine learning for rapid classification could overcome this bottleneck. Developing such procedures requires that taxonomic labels from an existing source data set are used for model training and prediction of an unknown target sample. Yet the feasibility of transfer learning for the classification of unknown samples remains to be tested. Here, we assess the efficiency of deep learning and domain transfer algorithms for family-level classification of below-ground bulk samples of Coleoptera from understudied forests of Cyprus. We trained neural network models with images from local surveys versus global databases of above-ground samples from tropical forests and evaluated how prediction accuracy was affected by: (a) the quality and resolution of images, (b) the size and complexity of the training set and (c) the transferability of identifications across very disparate source-target pairs that do not share any species or genera. Within-dataset classification accuracy reached 98% and depended on the number and quality of training images and on dataset complexity. The accuracy of between-datasets predictions was reduced to a maximum of 82% and depended greatly on the standardisation of the imaging procedure. When the source and target images were of similar quality and resolution, albeit from different faunas, the reduction of accuracy was minimal. Application of algorithms for domain adaptation significantly improved the prediction performance of models trained by non-standardised, low-quality images. Our findings demonstrate that existing databases can be used to train models and successfully classify images from unexplored biota, when the imaging conditions and classification algorithms are carefully considered. Also, our results provide guidelines for data acquisition and algorithmic development for high-throughput image-based biodiversity surveys.

scholarly journals Research on Network Security Application Based on Deep Learning

CONVERTER ◽  
2021 ◽  
pp. 598-605
Author(s):  
Zhao Jianchao
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Rapid Development ◽  
Internet Security ◽  
Detection Accuracy ◽  
Data Sets ◽  
Learning Technology ◽  
Data Set ◽  
Deep Learning Algorithm ◽  
Internet Industry

Behind the rapid development of the Internet industry, Internet security has become a hidden danger. In recent years, the outstanding performance of deep learning in classification and behavior prediction based on massive data makes people begin to study how to use deep learning technology. Therefore, this paper attempts to apply deep learning to intrusion detection to learn and classify network attacks. Aiming at the nsl-kdd data set, this paper first uses the traditional classification methods and several different deep learning algorithms for learning classification. This paper deeply analyzes the correlation among data sets, algorithm characteristics and experimental classification results, and finds out the deep learning algorithm which is relatively good at. Then, a normalized coding algorithm is proposed. The experimental results show that the algorithm can improve the detection accuracy and reduce the false alarm rate.

scholarly journals Robust Self-Adaptation Fall-Detection System Based on Camera Height

Sensors ◽  
2019 ◽  
Vol 19 (17) ◽  
pp. 3768 ◽  
Author(s):  
Kong ◽  
Chen ◽  
Wang ◽  
Chen ◽  
Meng ◽  
...  
Keyword(s):  
Deep Learning ◽  
Detection System ◽  
Fall Detection ◽  
Daily Activities ◽  
Detection Methods ◽  
Depth Camera ◽  
Detection Accuracy ◽  
Data Set ◽  
Human Segmentation ◽  
Self Adaptation

Vision-based fall-detection methods have been previously studied but many have limitations in terms of practicality. Due to differences in rooms, users do not set the camera or sensors at the same height. However, few studies have taken this into consideration. Moreover, some fall-detection methods are lacking in terms of practicality because only standing, sitting and falling are taken into account. Hence, this study constructs a data set consisting of various daily activities and fall events and studies the effect of camera/sensor height on fall-detection accuracy. Each activity in the data set is carried out by eight participants in eight directions and taken with the depth camera at five different heights. Many related studies heavily depended on human segmentation by using Kinect SDK but this is not reliable enough. To address this issue, this study proposes Enhanced Tracking and Denoising Alex-Net (ETDA-Net) to improve tracking and denoising performance and classify fall and non-fall events. Experimental results indicate that fall-detection accuracy is affected by camera height, against which ETDA-Net is robust, outperforming traditional deep learning based fall-detection methods.

scholarly journals A Target Detection Algorithm for Remote Sensing Images Based on Deep Learning

2021 ◽  
Vol 2021 ◽  
pp. 1-6
Author(s):  
Yi Lv ◽  
Zhengbo Yin ◽  
Zhezhou Yu
Keyword(s):  
Remote Sensing ◽  
Deep Learning ◽  
Target Detection ◽  
Detection Efficiency ◽  
False Positive Rate ◽  
Remote Sensing Image ◽  
Detection Algorithm ◽  
Detection Accuracy ◽  
Data Set ◽  
Detection Effect

In order to improve the accuracy of remote sensing image target detection, this paper proposes a remote sensing image target detection algorithm DFS based on deep learning. Firstly, dimension clustering module, loss function, and sliding window segmentation detection are designed. The data set used in the experiment comes from GoogleEarth, and there are 6 types of objects: airplanes, boats, warehouses, large ships, bridges, and ports. Training set, verification set, and test set contain 73490 images, 22722 images, and 2138 images, respectively. It is assumed that the number of detected positive samples and negative samples is A and B, respectively, and the number of undetected positive samples and negative samples is C and D, respectively. The experimental results show that the precision-recall curve of DFS for six types of targets shows that DFS has the best detection effect for bridges and the worst detection effect for boats. The main reason is that the size of the bridge is relatively large, and it is clearly distinguished from the background in the image, so the detection difficulty is low. However, the target of the boat is very small, and it is easy to be mixed with the background, so it is difficult to detect. The MAP of DFS is improved by 12.82%, the detection accuracy is improved by 13%, and the recall rate is slightly decreased by 1% compared with YOLOv2. According to the number of detection targets, the number of false positives (FPs) of DFS is much less than that of YOLOv2. The false positive rate is greatly reduced. In addition, the average IOU of DFS is 11.84% higher than that of YOLOv2. For small target detection efficiency and large remote sensing image detection, the DFS algorithm has obvious advantages.

scholarly journals Transforming Retinal Photographs to Entropy Images in Deep Learning to Improve Automated Detection for Diabetic Retinopathy

2018 ◽  
Vol 2018 ◽  
pp. 1-6 ◽  
Author(s):  
Gen-Min Lin ◽  
Mei-Juan Chen ◽  
Chia-Hung Yeh ◽  
Yu-Yang Lin ◽  
Heng-Yu Kuo ◽  
...  
Keyword(s):  
Diabetic Retinopathy ◽  
Deep Learning ◽  
Sensitivity And Specificity ◽  
Block Size ◽  
Detection Accuracy ◽  
Data Sets ◽  
Feature Maps ◽  
Data Set ◽  
Fundus Photographs ◽  
Grade 3

Entropy images, representing the complexity of original fundus photographs, may strengthen the contrast between diabetic retinopathy (DR) lesions and unaffected areas. The aim of this study is to compare the detection performance for severe DR between original fundus photographs and entropy images by deep learning. A sample of 21,123 interpretable fundus photographs obtained from a publicly available data set was expanded to 33,000 images by rotating and flipping. All photographs were transformed into entropy images using block size 9 and downsized to a standard resolution of 100 × 100 pixels. The stages of DR are classified into 5 grades based on the International Clinical Diabetic Retinopathy Disease Severity Scale: Grade 0 (no DR), Grade 1 (mild nonproliferative DR), Grade 2 (moderate nonproliferative DR), Grade 3 (severe nonproliferative DR), and Grade 4 (proliferative DR). Of these 33,000 photographs, 30,000 images were randomly selected as the training set, and the remaining 3,000 images were used as the testing set. Both the original fundus photographs and the entropy images were used as the inputs of convolutional neural network (CNN), and the results of detecting referable DR (Grades 2–4) as the outputs from the two data sets were compared. The detection accuracy, sensitivity, and specificity of using the original fundus photographs data set were 81.80%, 68.36%, 89.87%, respectively, for the entropy images data set, and the figures significantly increased to 86.10%, 73.24%, and 93.81%, respectively (all p values <0.001). The entropy image quantifies the amount of information in the fundus photograph and efficiently accelerates the generating of feature maps in the CNN. The research results draw the conclusion that transformed entropy imaging of fundus photographs can increase the machinery detection accuracy, sensitivity, and specificity of referable DR for the deep learning-based system.

Deep Learning for the Detection and Recognition of Rail Defects in Ultrasound B-Scan Images

2021 ◽  
pp. 036119812110215
Author(s):  
Zhengxing Chen ◽  
Qihang Wang ◽  
Kanghua Yang ◽  
Tianle Yu ◽  
Jidong Yao ◽  
...  
Keyword(s):  
Deep Learning ◽  
Image Recognition ◽  
Defect Detection ◽  
High Performance ◽  
Image Data ◽  
Small Scale ◽  
Detection Accuracy ◽  
Data Set ◽  
Detection Rates ◽  
B Scan Images

Rail defect detection is crucial to rail operations safety. Addressing the problem of high false alarm rates and missed detection rates in rail defect detection, this paper proposes a deep learning method using B-scan image recognition of rail defects with an improved YOLO (you only look once) V3 algorithm. Specifically, the developed model can automatically position a box in B-scan images and recognize EFBWs (electric flash butt welds), normal bolt holes, BHBs (bolt hole breaks), and SSCs (shells, spalling, or corrugation). First, the network structure of the YOLO V3 model is modified to enlarge the receptive field of the model, thus improving the detection accuracy of the model for small-scale objects. Second, B-scan image data are analyzed and standardized. Third, the initial training parameters of the improved YOLO V3 model are adjusted. Finally, the experiments are performed on 453 B-scan images as the test data set. Results show that the B-scan image recognition model based on the improved YOLO V3 algorithm reached high performance in its precision. Additionally, the detection accuracy and efficiency are improved compared with the original model and the final mean average precision can reach 87.41%.

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