scholarly journals Classification for Avian Malaria Parasite Plasmodium Gallinaceum Blood Stages by Using Deep Convolutional Neural Networks

2021 ◽  
Author(s):  
Veerayuth Kittichai ◽  
Morakot Kaewthamasorn ◽  
Suchansa Thanee ◽  
Rangsan Jomtarak ◽  
Kamonpob Klanboot ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Malaria Parasite ◽  
Avian Malaria ◽  
Superior Performance ◽  
Misclassification Rate ◽  
Plasmodium Gallinaceum ◽  
Deep Convolutional Neural Networks ◽  
Avian Malaria Parasite

Abstract The infection of an avian malaria parasite (Plasmodium gallinaceum) in domestic chickens presents a major threat to the poultry industry because it causes economic loss in both the quality and quantity of meat and egg production. Computer-aided diagnosis has been developed to automatically identify avian malaria infections and classify the blood infection stage development. In this study, four types of deep convolutional neural networks, namely Darknet, Darknet19, Darknet19-448 and Densenet201 are used to classify P. gallinaceum blood stages. We randomly collected a dataset of 12,761 single-cell images consisting of four parasite stages from ten-infected blood films stained by Giemsa. All images were confirmed by three well-trained examiners. The study mainly compared several image classification models and used both qualitative and quantitative data for the evaluation of the proposed models. In the model-wise comparison, the four neural network models gave us high values with the mean average accuracy of at least 97%. The Darknet can reproduce a superior performance in the classification of the P. gallinaceum development stages across any other model architectures. Furthermore, the Darknet has the best performance in multiple class-wise classification, with average values of greater than 99% in accuracy, specificity, and sensitivity. It also has a low misclassification rate (< 1%) than the other three models. Therefore, the model is more suitable in the classification of P. gallinaceum blood stages. The findings could help us create a fast screening method to help non-experts in field studies where there is a lack of specialized instruments for avian malaria diagnostics.

scholarly journals Classification for avian malaria parasite Plasmodium gallinaceum blood stages by using deep convolutional neural networks

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Veerayuth Kittichai ◽  
Morakot Kaewthamasorn ◽  
Suchansa Thanee ◽  
Rangsan Jomtarak ◽  
Kamonpob Klanboot ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Malaria Parasite ◽  
Avian Malaria ◽  
Superior Performance ◽  
Misclassification Rate ◽  
Plasmodium Gallinaceum ◽  
Deep Convolutional Neural Networks ◽  
Avian Malaria Parasite

AbstractThe infection of an avian malaria parasite (Plasmodium gallinaceum) in domestic chickens presents a major threat to the poultry industry because it causes economic loss in both the quality and quantity of meat and egg production. Computer-aided diagnosis has been developed to automatically identify avian malaria infections and classify the blood infection stage development. In this study, four types of deep convolutional neural networks, namely Darknet, Darknet19, Darknet19-448 and Densenet201 are used to classify P. gallinaceum blood stages. We randomly collected a dataset of 12,761 single-cell images consisting of three parasite stages from ten-infected blood films stained by Giemsa. All images were confirmed by three well-trained examiners. The study mainly compared several image classification models and used both qualitative and quantitative data for the evaluation of the proposed models. In the model-wise comparison, the four neural network models gave us high values with a mean average accuracy of at least 97%. The Darknet can reproduce a superior performance in the classification of the P. gallinaceum development stages across any other model architectures. Furthermore, the Darknet has the best performance in multiple class-wise classification, with average values of greater than 99% in accuracy, specificity, and sensitivity. It also has a low misclassification rate (< 1%) than the other three models. Therefore, the model is more suitable in the classification of P. gallinaceum blood stages. The findings could help us create a fast-screening method to help non-experts in field studies where there is a lack of specialized instruments for avian malaria diagnostics.

scholarly journals Classification for Avian Malaria Parasite Plasmodium Gallinaceum Blood Stages by Using Deep Convolutional Neural Networks

2021 ◽  
Author(s):  
Veerayuth Kittichai ◽  
Morakot Kaewthamasorn ◽  
Suchansa Thanee ◽  
Rangsan Jomtarak ◽  
Kamonpob Klanboot ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Malaria Parasite ◽  
Avian Malaria ◽  
Superior Performance ◽  
Rapid Screening ◽  
Plasmodium Gallinaceum ◽  
Deep Convolutional Neural Networks ◽  
Avian Malaria Parasite

Abstract Background: The infections of an avian malaria parasite (Plasmodium gallinaceum) in domestic chickens presents a major threat to poultry industry because it cause economical loss in both quality and quantity of meat and egg productions. Deep learning algorithms have been developed to identify avian malaria infections and classify its blood stage development. Methods: In this study, four types of deep convolutional neural networks namely Darknet, Darknet19, darknet19_448x448 and Densenet 201 are used to classify P. gallinaceum blood stages. We randomly collected dataset of 10,548 single-cell images consisting of four parasite stages from ten-infected blood films stained by Giemsa. All images were confirmed by three well-trained examiners. Results: In the model-wise comparison, the four neural network models gave us high values in the mean average precision at least 95%. Darknet can reproduce a superior performance in classification of the P. gallinaceum development stages across any other model architectures. In addition, Darknet also has best performance in multiple class-wise classification, scoring the average values of greater than 99% in accuracy, specificity, sensitivity, precision, and F1-score.Conclusions: Therefore, Darknet model is more suitable in the classification of P. gallinaceum blood stages than the other three models. The result may contribute us to develop the rapid screening tool for further assist non-expert in filed study where is lack of specific instrument for avian malaria diagnostic.

scholarly journals Segmentation and classification of colon glands with deep convolutional neural networks and total variation regularization

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3874 ◽  
Author(s):  
Philipp Kainz ◽  
Michael Pfeiffer ◽  
Martin Urschler
Keyword(s):  
Neural Networks ◽  
Total Variation ◽  
Convolutional Neural Networks ◽  
Machine Learning Techniques ◽  
Superior Performance ◽  
Total Variation Regularization ◽  
Deep Convolutional Neural Networks ◽  
Large Variability ◽  
Medical Diagnoses

Segmentation of histopathology sections is a necessary preprocessing step for digital pathology. Due to the large variability of biological tissue, machine learning techniques have shown superior performance over conventional image processing methods. Here we present our deep neural network-based approach for segmentation and classification of glands in tissue of benign and malignant colorectal cancer, which was developed to participate in the GlaS@MICCAI2015 colon gland segmentation challenge. We use two distinct deep convolutional neural networks (CNN) for pixel-wise classification of Hematoxylin-Eosin stained images. While the first classifier separates glands from background, the second classifier identifies gland-separating structures. In a subsequent step, a figure-ground segmentation based on weighted total variation produces the final segmentation result by regularizing the CNN predictions. We present both quantitative and qualitative segmentation results on the recently released and publicly available Warwick-QU colon adenocarcinoma dataset associated with the GlaS@MICCAI2015 challenge and compare our approach to the simultaneously developed other approaches that participated in the same challenge. On two test sets, we demonstrate our segmentation performance and show that we achieve a tissue classification accuracy of 98% and 95%, making use of the inherent capability of our system to distinguish between benign and malignant tissue. Our results show that deep learning approaches can yield highly accurate and reproducible results for biomedical image analysis, with the potential to significantly improve the quality and speed of medical diagnoses.

CNN-based Classification of Degraded Images

2020 ◽  
Vol 2020 (10) ◽  
pp. 28-1-28-7 ◽  
Author(s):  
Kazuki Endo ◽  
Masayuki Tanaka ◽  
Masatoshi Okutomi
Keyword(s):  
Neural Networks ◽  
Image Restoration ◽  
Image Classification ◽  
Convolutional Neural Networks ◽  
Deep Convolutional Neural Networks ◽  
Alternative Approach ◽  
Degraded Image ◽  
Degraded Images ◽  
Straightforward Approach

Classification of degraded images is very important in practice because images are usually degraded by compression, noise, blurring, etc. Nevertheless, most of the research in image classification only focuses on clean images without any degradation. Some papers have already proposed deep convolutional neural networks composed of an image restoration network and a classification network to classify degraded images. This paper proposes an alternative approach in which we use a degraded image and an additional degradation parameter for classification. The proposed classification network has two inputs which are the degraded image and the degradation parameter. The estimation network of degradation parameters is also incorporated if degradation parameters of degraded images are unknown. The experimental results showed that the proposed method outperforms a straightforward approach where the classification network is trained with degraded images only.

scholarly journals Deep convolutional neural networks for cardiovascular vulnerable plaque detection

2019 ◽  
Vol 277 ◽  
pp. 02024 ◽  
Author(s):  
Lincan Li ◽  
Tong Jia ◽  
Tianqi Meng ◽  
Yizhe Liu
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Networks ◽  
Vulnerable Plaque ◽  
Recall Rate ◽  
Superior Performance ◽  
Learning Approaches ◽  
Deep Convolutional Neural Networks ◽  
Vulnerable Plaques ◽  
Plaque Detection

In this paper, an accurate two-stage deep learning method is proposed to detect vulnerable plaques in ultrasonic images of cardiovascular. Firstly, a Fully Convonutional Neural Network (FCN) named U-Net is used to segment the original Intravascular Optical Coherence Tomography (IVOCT) cardiovascular images. We experiment on different threshold values to find the best threshold for removing noise and background in the original images. Secondly, a modified Faster RCNN is adopted to do precise detection. The modified Faster R-CNN utilize six-scale anchors (122,162,322,642,1282,2562) instead of the conventional one scale or three scale approaches. First, we present three problems in cardiovascular vulnerable plaque diagnosis, then we demonstrate how our method solve these problems. The proposed method in this paper apply deep convolutional neural networks to the whole diagnostic procedure. Test results show the Recall rate, Precision rate, IoU (Intersection-over-Union) rate and Total score are 0.94, 0.885, 0.913 and 0.913 respectively, higher than the 1st team of CCCV2017 Cardiovascular OCT Vulnerable Plaque Detection Challenge. AP of the designed Faster RCNN is 83.4%, higher than conventional approaches which use one-scale or three-scale anchors. These results demonstrate the superior performance of our proposed method and the power of deep learning approaches in diagnose cardiovascular vulnerable plaques.

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