scholarly journals Molecular Studies for Putative Promoter Activity in mdh sucCDAB Operon in Sinorhizobium meliloti

2018 ◽  
Vol 4 (1) ◽  
pp. 1-9
Author(s):  
Rateb Abbas ◽  
Noha Sorour
1994 ◽  
Vol 14 (9) ◽  
pp. 6171-6179 ◽  
Author(s):  
N R Sturm ◽  
R Kuras ◽  
S Büschlen ◽  
W Sakamoto ◽  
K L Kindle ◽  
...  

FUD6, a nonphotosynthetic mutant of Chlamydomonas reinhardtii, was previously found to be deficient in the synthesis of subunit IV of the cytochrome b6/f complex, the chloroplast petD gene product (C. Lemaire, J. Girard-Bascou, F.-A. Wollman, and P. Bennoun, Biochim. Biophys. Acta 851:229-238, 1986). The lesion in FUD6 is a 236-bp deletion between two 11-bp direct repeats in the chloroplast genome. It extends from 82 to 72 bp upstream of the 5' end of wild-type petD mRNA to 156 to 166 bp downstream of the 5' end. Thus, the deletion extends into the putative promoter and 5' untranslated region of petD. No petD mRNA of the normal size can be detected in FUD6 cells, but a low level of a dicistronic message accumulates, which contains the coding regions for subunit IV and cytochrome f, the product of the upstream petA gene. petD transcriptional activity in FUD6 is not significantly altered from the wild-type level. This transcriptional activity was eliminated by petA promoter disruptions, suggesting that it originates at the petA promoter. We conclude that the petD-coding portion of most cotranscripts is rapidly degraded in FUD6, possibly following processing events that generate the 3' end of petA mRNA. A chloroplast transformant was constructed in which only the sequence from -81 to -2 relative to the major 5' end of the petD transcript was deleted. Although this deletion eliminates all detectable petD promoter activity, the transformant grows phototrophically and accumulates high levels of monocistronic petD mRNA. We conclude that the petD gene can be transcribed by functionally redundant promoters. In the absence of a functional petD promoter, a lack of transcription termination allows the downstream petD gene to be cotranscribed with the petA coding region and thereby expressed efficiently.


2015 ◽  
Vol 472 (2) ◽  
pp. 147-156 ◽  
Author(s):  
Mutsumi Katayama ◽  
Rasmus J.O. Sjögren ◽  
Brendan Egan ◽  
Anna Krook

We investigated the putative promoter region of miRNA let-7a-1/f-1/d cluster, determined promoter activity and identified a novel promoter area for these three let-7 family members expressed. We provide evidence that let-7 expression is regulated by insulin and tumour necrosis factor (TNF)-α.


2005 ◽  
Vol 37 (4) ◽  
pp. 221-226 ◽  
Author(s):  
Yan-Jie Liu ◽  
Biao Hu ◽  
Jia-Bi Zhu ◽  
Shan-Jiong Shen ◽  
Guan-Qiao Yu

AbstractIn prokaryotes, DNA supercoiling regulates the expression of many genes; for example, the expression of Klebsiella pneumoniae nifLA operon depends on DNA negative supercoiling in anaerobically grown cells, which indicates that DNA supercoiling might play a role in gene regulation of the anaerobic response. Since the expression of the nifH promoter in Sinorhizobium meliloti is not repressed by oxygen, it is proposed that the status of DNA supercoiling may not affect the expression of the nifH promoter. We tested this hypothesis by analyzing nifH promoter activity in wild-type and gyr Escherichia coli in the presence and absence of DNA gyrase inhibitors. Our results show that gene expression driven by the S. meliloti nifH promoter requires the presence of active DNA gyrase. Because DNA gyrase increases the number of negative superhelical turns in DNA in the presence of ATP, our data indicate that negative supercoiling is also important for nifH promoter activity. Our study also shows that the DNA supercoiling-dependent S. meliloti nifH promoter activity is related to the trans-acting factors NtrC and NifA that activate it. DNA supercoiling appeared to have a stronger effect on NtrC-activated nifH promoter activity than on NifA-activated promoter activity. Collectively, these results from the S. meliloti nifH promoter model system seem to indicate that, in addition to regulating gene expression during anaerobic signaling, DNA supercoiling may also provide a favorable topology for trans-acting factor binding and promoter activation regardless of oxygen status.


1994 ◽  
Vol 14 (9) ◽  
pp. 6171-6179
Author(s):  
N R Sturm ◽  
R Kuras ◽  
S Büschlen ◽  
W Sakamoto ◽  
K L Kindle ◽  
...  

FUD6, a nonphotosynthetic mutant of Chlamydomonas reinhardtii, was previously found to be deficient in the synthesis of subunit IV of the cytochrome b6/f complex, the chloroplast petD gene product (C. Lemaire, J. Girard-Bascou, F.-A. Wollman, and P. Bennoun, Biochim. Biophys. Acta 851:229-238, 1986). The lesion in FUD6 is a 236-bp deletion between two 11-bp direct repeats in the chloroplast genome. It extends from 82 to 72 bp upstream of the 5' end of wild-type petD mRNA to 156 to 166 bp downstream of the 5' end. Thus, the deletion extends into the putative promoter and 5' untranslated region of petD. No petD mRNA of the normal size can be detected in FUD6 cells, but a low level of a dicistronic message accumulates, which contains the coding regions for subunit IV and cytochrome f, the product of the upstream petA gene. petD transcriptional activity in FUD6 is not significantly altered from the wild-type level. This transcriptional activity was eliminated by petA promoter disruptions, suggesting that it originates at the petA promoter. We conclude that the petD-coding portion of most cotranscripts is rapidly degraded in FUD6, possibly following processing events that generate the 3' end of petA mRNA. A chloroplast transformant was constructed in which only the sequence from -81 to -2 relative to the major 5' end of the petD transcript was deleted. Although this deletion eliminates all detectable petD promoter activity, the transformant grows phototrophically and accumulates high levels of monocistronic petD mRNA. We conclude that the petD gene can be transcribed by functionally redundant promoters. In the absence of a functional petD promoter, a lack of transcription termination allows the downstream petD gene to be cotranscribed with the petA coding region and thereby expressed efficiently.


2012 ◽  
Vol 39 (2) ◽  
pp. 217-233 ◽  
Author(s):  
J. David Archibald

Studies of the origin and diversification of major groups of plants and animals are contentious topics in current evolutionary biology. This includes the study of the timing and relationships of the two major clades of extant mammals – marsupials and placentals. Molecular studies concerned with marsupial and placental origin and diversification can be at odds with the fossil record. Such studies are, however, not a recent phenomenon. Over 150 years ago Charles Darwin weighed two alternative views on the origin of marsupials and placentals. Less than a year after the publication of On the origin of species, Darwin outlined these in a letter to Charles Lyell dated 23 September 1860. The letter concluded with two competing phylogenetic diagrams. One showed marsupials as ancestral to both living marsupials and placentals, whereas the other showed a non-marsupial, non-placental as being ancestral to both living marsupials and placentals. These two diagrams are published here for the first time. These are the only such competing phylogenetic diagrams that Darwin is known to have produced. In addition to examining the question of mammalian origins in this letter and in other manuscript notes discussed here, Darwin confronted the broader issue as to whether major groups of animals had a single origin (monophyly) or were the result of “continuous creation” as advocated for some groups by Richard Owen. Charles Lyell had held similar views to those of Owen, but it is clear from correspondence with Darwin that he was beginning to accept the idea of monophyly of major groups.


2003 ◽  
Vol 52 (3-4) ◽  
pp. 395-408 ◽  
Author(s):  
László Ködöböcz ◽  
Borbála Biró ◽  
Ilona Dusha ◽  
Zoltánné Izsáki ◽  
Lajos Sáry ◽  
...  

A lucerna magoltására alkalmas két Sinorhizobium meliloti törzs túléloképességét ellenoriztük laboratóriumi körülmények között. Az oltás szempontjait figyelembe véve a baktériumtörzsek túléloképességét a magfelszínen, folyékony táptalajban, talajban és mezogazdasági hulladék felhasználásával készített komposztban ellenoriztük 1-6 hetes idotartamban. A kiindulási sejtszámhoz képest a törzsek túléloképességét (pusztulását és esetleges szaporodását) az általunk módosított, szelektív táplemezes kitenyésztéssel követtük nyomon antibiotikum marker segítségével. Megállapítást nyert, hogy a különféle lucernamagvak felszínén a Rhizobium törzsek túléloképességét a fajtatulajdonságok erosen befolyásolják. A fajták és az oltóanyagok közötti kompatibilitás-vizsgálatoknak tehát a mikrobiális oltóanyagok alkalmazásánál nagy jelentosége van.  Talajokban a Rhizobiumok perzisztenciáját a talajok kötöttsége, alacsony pH-ja és a tápanyag-szegény körülmények is gátolhatják. Az alkalmazott törzsek vivoanyagának a nagy szerves- és tápanyagtartalmú komposztok a legmegfelelobbek. Az anaerob módon eloállított komposzt a vizsgált törzsek túléloképességéhez kedvezobb körülményeket biztosít. Ennek oka feltételezésünk szerint a biotikus tényezok kedvezobb alakulása, azaz az anaerob körülményekhez adaptálódott konkurens mikrobák kisebb fokú versenyképessége lehet. Feltételezéseinket a sterilizált komposztban kimutatott nagyobb mértéku túléloképesség támasztja alá.  A megfelelo komposztok ilyen irányú felhasználásával kiváltható a tozegek alkalmazása, az oltóanyag-eloállítási technológia gazdaságosabbá teheto.


2003 ◽  
Author(s):  
Charles Thomas Parker ◽  
Dorothea Taylor ◽  
George M Garrity

2003 ◽  
Author(s):  
Charles Thomas Parker ◽  
Dorothea Taylor ◽  
George M Garrity

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