A Systems Biology Study of Two Distinct Growth Phases of Saccharomyces cerevisiae Cultures

2004 ◽  
Vol 5 (8) ◽  
pp. 649-663 ◽  
Author(s):  
A. Martins ◽  
D. Camacho ◽  
J. Shuman ◽  
W. Sha ◽  
P. Mendes ◽  
...  
1987 ◽  
Vol 148 (2) ◽  
pp. 88-94 ◽  
Author(s):  
E. Valent�n ◽  
E. Herrero ◽  
H. Rico ◽  
F. Miragall ◽  
R. Sentandreu

2004 ◽  
Vol 3 (2) ◽  
pp. 331-338 ◽  
Author(s):  
Guillaume Stahl ◽  
Samia N. Ben Salem ◽  
Lifeng Chen ◽  
Bing Zhao ◽  
Philip J. Farabaugh

ABSTRACT When the yeast Saccharomyces cerevisiae shifts from rapid growth on glucose to slow growth on ethanol, it undergoes profound changes in cellular metabolism, including the destruction of most of the translational machinery. We have examined the effect of this metabolic change, termed the diauxic shift, on the frequency of translational errors. Recoding sites are mRNA sequences that increase the frequency of translational errors, providing a convenient reporter of translational accuracy. We found that the diauxic shift causes no overall change in translational accuracy but does cause a strong reduction in the frequency of one type of programmed error: Ty +1 frameshifting. Genetic data suggest that this effect may be due to changes in the relative amounts of tRNA participating in translation elongation. We discuss possible implications for expression strategies that use recoding.


PLoS ONE ◽  
2013 ◽  
Vol 8 (1) ◽  
pp. e54144 ◽  
Author(s):  
José Manuel Otero ◽  
Donatella Cimini ◽  
Kiran R. Patil ◽  
Simon G. Poulsen ◽  
Lisbeth Olsson ◽  
...  

2010 ◽  
Vol 1217 (11) ◽  
pp. 1813-1820 ◽  
Author(s):  
G.Ch. Lainioti ◽  
J. Kapolos ◽  
A. Koliadima ◽  
G. Karaiskakis

Author(s):  
Naglis Malys ◽  
Jill A. Wishart ◽  
Stephen G. Oliver ◽  
John E.G. McCarthy

1997 ◽  
Vol 328 (2) ◽  
pp. 401-407 ◽  
Author(s):  
Liudmilla RUBBI ◽  
Giorgio CAMILLONI ◽  
Micaela CASERTA ◽  
Ernesto DI MAURO ◽  
Sabrina VENDITTI

We have determined the chromatin organization of the Saccharomyces cerevisiae DNA topoisomerase I promoter. Three nucleosomal core particles have been mapped at nucleotide level over the promoter region, encompassing the presumptive TATA sequence and the two RNA initiation sites; the most upstream nucleosome particle forms on to a 29 bp-long poly(dA-dT) element. This simple organization remains constant throughout both the logarithmic and the linear phase of growth, with the exception of an increased accessibility to micrococcal nuclease of the nucleosome covering the TATA box and the RNA initiation sites during the diauxic shift (the switching from the fermentative to the respiratory metabolism) in parallel with an increase of the DNA topoisomerase I mRNA. In addition, a strong disorganization of the bulk chromatin structure in the late stationary phase is also reported.


2013 ◽  
Vol 12 (5) ◽  
pp. 725-738 ◽  
Author(s):  
Martin Zavrel ◽  
Sam J. Hoot ◽  
Theodore C. White

ABSTRACTSterol import has been characterized under various conditions in three distinct fungal species, the model organismSaccharomyces cerevisiaeand two human fungal pathogensCandida glabrataandCandida albicans, employing cholesterol, the sterol of higher eukaryotes, as well as its fungal equivalent, ergosterol. Import was confirmed by the detection of esterified cholesterol within the cells. Comparing the three fungal species, we observe sterol import under three different conditions. First, as previously well characterized, we observe sterol import under low oxygen levels inS. cerevisiaeandC. glabrata, which is dependent on the transcription factor Upc2 and/or its orthologs or paralogs. Second, we observe sterol import under aerobic conditions exclusively in the two pathogenic fungiC. glabrataandC. albicans. Uptake emerges during post-exponential-growth phases, is independent of the characterized Upc2-pathway and is slower compared to the anaerobic uptake inS. cerevisiaeandC. glabrata. Third, we observe under normoxic conditions inC. glabratathat Upc2-dependent sterol import can be induced in the presence of fetal bovine serum together with fluconazole. In summary,C. glabrataimports sterols both in aerobic and anaerobic conditions, and the limited aerobic uptake can be further stimulated by the presence of serum together with fluconazole.S. cerevisiaeimports sterols only in anaerobic conditions, demonstrating aerobic sterol exclusion. Finally,C. albicansimports sterols exclusively aerobically in post-exponential-growth phases, independent of Upc2. For the first time, we provide direct evidence of sterol import into the human fungal pathogenC. albicans, which until now was believed to be incapable of active sterol import.


2020 ◽  
Vol 172 ◽  
pp. 105906
Author(s):  
Madhumathan Mukherjee ◽  
Ankita Nandi ◽  
Krishna Chandra ◽  
Surjya Kumar Saikia ◽  
Chandan Kumar Jana ◽  
...  

Fermentation ◽  
2022 ◽  
Vol 8 (1) ◽  
pp. 33
Author(s):  
Yanfeng Liu ◽  
Bing Wan ◽  
Fan Yang ◽  
Xiaolong Zhang ◽  
Jianghua Li ◽  
...  

Saccharomyces cerevisiae and Lactobacillus panis are ethanol and lactic acid producers in Maotai-flavor Baijiu fermentation. Understanding their interaction is important to regulate the microbiome composition during fermentation and biosynthesis of ethanol and lactic acid. This study is the first to analyze the interaction between S. cerevisiae and L. panis at different growth phases during co-cultivation. Results showed that the different growth phases of S. cerevisiae modulated L. panis growth. Metabolomics analysis showed that amino acids and nucleoside secreted by S. cerevisiae promote L. panis growth, while ethanol inhibited L. panis growth. Furthermore, S. cerevisiae modulated L. panis cell growth under varying sugar concentrations. Simulated solid-state fermentation demonstrated that regulating the sugar concentration or the ratio of S. cerevisiae to L. panis could inhibit L. panis cell growth and reduce lactic acid accumulation. This study provided an understanding on Maotai-flavor Baijiu microbiome, which might be useful for metabolite regulation.


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