Origin and formation of Yaponesians based on genome sequences

Impact ◽  
2020 ◽  
Vol 2020 (7) ◽  
pp. 56-58
Author(s):  
Naruya Saitou
Keyword(s):  
Population Genetics ◽  
Human Migration ◽  
Human Populations ◽  
Genome Sequences ◽  
Japanese Archipelago ◽  
Broad Term ◽  
The Japanese Archipelago ◽  
Ebb And Flow ◽  
National Institute Of Genetics

The ebb and flow of human migration across the planet can nowadays be probed with advanced archaeology, linguistics, anthropology and genomics. Together, these can provide a convincing picture of the various divergences and convergences of different human populations across vast areas. It is now possible to better understand how, why and where a particular group or society arose. Professor Naruya Saitou of the Population Genetics Laboratory at the National Institute of Genetics in Mishima has dedicated his career to the synthesis of these disciplines. The current focus of his research is on understanding the origins and formation of the Yaponesian people. This broad term was coined by writer Toshio Shimao in 1960s to encompass the diverse peoples of the Japanese Archipelago over its many thousands of years of inhabitation. Saitou's research is helping to uncover Japan's ancient past.

scholarly journals House mouse Mus musculus dispersal in East Eurasia inferred from 98 newly determined complete mitochondrial genome sequences

Heredity ◽  
2020 ◽  
Vol 126 (1) ◽  
pp. 132-147 ◽  
Author(s):  
Yue Li ◽  
Kazumichi Fujiwara ◽  
Naoki Osada ◽  
Yosuke Kawai ◽  
Toyoyuki Takada ◽  
...  
Keyword(s):  
House Mouse ◽  
Mus Musculus ◽  
Southern China ◽  
Population Expansion ◽  
Human Migration ◽  
Western China ◽  
Eastern Coast ◽  
Mtdna Sequences ◽  
Japanese Archipelago ◽  
The Japanese Archipelago

AbstractThe Eurasian house mouse Mus musculus is useful for tracing prehistorical human movement related to the spread of farming. We determined whole mitochondrial DNA (mtDNA) sequences (ca. 16,000 bp) of 98 wild-derived individuals of two subspecies, M. m. musculus (MUS) and M. m. castaneus (CAS). We revealed directional dispersals reaching as far as the Japanese Archipelago from their homelands. Our phylogenetic analysis indicated that the eastward movement of MUS was characterised by five step-wise regional extension events: (1) broad spatial expansion into eastern Europe and the western part of western China, (2) dispersal to the eastern part of western China, (3) dispersal to northern China, (4) dispersal to the Korean Peninsula and (5) colonisation and expansion in the Japanese Archipelago. These events were estimated to have occurred during the last 2000–18,000 years. The dispersal of CAS was characterised by three events: initial divergences (ca. 7000–9000 years ago) of haplogroups in northernmost China and the eastern coast of India, followed by two population expansion events that likely originated from the Yangtze River basin to broad areas of South and Southeast Asia, including Sri Lanka, Bangladesh and Indonesia (ca. 4000–6000 years ago) and to Yunnan, southern China and the Japanese Archipelago (ca. 2000–3500). This study provides a solid framework for the spatiotemporal movement of the human-associated organisms in Holocene Eastern Eurasia using whole mtDNA sequences, reliable evolutionary rates and accurate branching patterns. The information obtained here contributes to the analysis of a variety of animals and plants associated with prehistoric human migration.

The Diffusion and Significance of People of the Korean Peninsula to the Japanese archipelago during the Paleolithic Age

2018 ◽  
pp. 5-43
Author(s):  
Yongjoon Chang
Keyword(s):  
Korean Peninsula ◽  
Raw Materials ◽  
Stone Tools ◽  
Human Migration ◽  
Korea Strait ◽  
Late Paleolithic ◽  
Japanese Archipelago ◽  
The People ◽  
The Japanese Archipelago ◽  
First Time

The Japanese archipelago began to be occupied by people for the first time after the people migrated from the Korean Peninsula in the Paleolithic Age. Peopling of Japan is presumed to be around the middle Paleolithic or late Paleolithic. There was the Korea strait between the two areas, the Korean Peninsula and the Japanese archipelgo, and it used to be limited for coming and going for the people. However, the sea level changes throughout the Upper Pleistocene caused different patterns in human migration and interaction. In both areas, similar types of stone tools including tanged point, bilateral point, stemmed point, and composite point have been excavated in the late Paleolithic period. It is assumed that these types of stone tools might have been transmitted to Japan from the Korean peninsula. Paleolithic people of the Japanese archipelago were influenced by the stone technique of the Korean peninsula, but made their tools with the local raw materials. Paleolithic people utilized blades and microblades which were common in Northeast Asia. The various shapes of projectile points of the Japanese archipelago found in the Late Paleolithic layers could be influenced by the Korean Peninsula. Therefore, it can be assumed that the hunting method to throw a spear were transferred from the Korean peninsula to the Japanese archipelago based of the technological evidence. The manufacturing techniques of the points verify that they were from the Korean peninsula eventhough the tools were made of the local raw materials. Based on the technological tradition, I conclude that the people who lived on the Korean Peninsula crossed the Korea Strait for the first time during the end of the Middle to the Late Paleolithic.

A Primer of Population Genetics and Genomics

2020 ◽  
Author(s):  
Daniel L. Hartl
Keyword(s):  
Population Genetics ◽  
Complex Traits ◽  
Evolutionary Biology ◽  
Knowledge Retention ◽  
Learning By Doing ◽  
Human Populations ◽  
Gene Drive ◽  
Molecular Population Genetics ◽  
Genetics And Genomics ◽  
And Mathematics

A Primer of Population Genetics and Genomics, 4th edition, has been completely revised and updated to provide a concise but comprehensive introduction to the basic concepts of population genetics and genomics. Recent textbooks have tended to focus on such specialized topics as the coalescent, molecular evolution, human population genetics, or genomics. This primer bucks that trend by encouraging a broader familiarity with, and understanding of, population genetics and genomics as a whole. The overview ranges from mating systems through the causes of evolution, molecular population genetics, and the genomics of complex traits. Interwoven are discussions of ancient DNA, gene drive, landscape genetics, identifying risk factors for complex diseases, the genomics of adaptation and speciation, and other active areas of research. The principles are illuminated by numerous examples from a wide variety of animals, plants, microbes, and human populations. The approach also emphasizes learning by doing, which in this case means solving numerical or conceptual problems. The rationale behind this is that the use of concepts in problem-solving lead to deeper understanding and longer knowledge retention. This accessible, introductory textbook is aimed principally at students of various levels and abilities (from senior undergraduate to postgraduate) as well as practising scientists in the fields of population genetics, ecology, evolutionary biology, computational biology, bioinformatics, biostatistics, physics, and mathematics.

scholarly journals Selective sweep for an enhancer involucrin allele identifies skin barrier adaptation out of Africa

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Mary Elizabeth Mathyer ◽  
Erin A. Brettmann ◽  
Alina D. Schmidt ◽  
Zane A. Goodwin ◽  
Inez Y. Oh ◽  
...  
Keyword(s):  
Selective Sweep ◽  
Skin Barrier ◽  
Human Migration ◽  
Epidermal Differentiation ◽  
Human Populations ◽  
Epidermal Differentiation Complex ◽  
Regulatory Module ◽  
Reporter Assays ◽  
Out Of Africa

AbstractThe genetic modules that contribute to human evolution are poorly understood. Here we investigate positive selection in the Epidermal Differentiation Complex locus for skin barrier adaptation in diverse HapMap human populations (CEU, JPT/CHB, and YRI). Using Composite of Multiple Signals and iSAFE, we identify selective sweeps for LCE1A-SMCP and involucrin (IVL) haplotypes associated with human migration out-of-Africa, reaching near fixation in European populations. CEU-IVL is associated with increased IVL expression and a known epidermis-specific enhancer. CRISPR/Cas9 deletion of the orthologous mouse enhancer in vivo reveals a functional requirement for the enhancer to regulate Ivl expression in cis. Reporter assays confirm increased regulatory and additive enhancer effects of CEU-specific polymorphisms identified at predicted IRF1 and NFIC binding sites in the IVL enhancer (rs4845327) and its promoter (rs1854779). Together, our results identify a selective sweep for a cis regulatory module for CEU-IVL, highlighting human skin barrier evolution for increased IVL expression out-of-Africa.

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