scholarly journals Team Science in Precision Medicine (Preprint)

2019 ◽  
Author(s):  
Gil Alterovitz ◽  
Ning An ◽  
John Mattison ◽  
Xinyun Chen

BACKGROUND The concept of a meta-topical brainforest is proposed, to reflect a link between collaborative research and complex ecosystems. Tropical rainforests leverage a diversity of species to capture and convert solar energy into carbon-based life, and research teams can harvest a similar benefit from a diversity of data, tools, and thought paradigms. According to the National Institutes of Health (NIH), team science is “a collaborative and often cross-disciplinary approach to scientific inquiry that draws researchers who otherwise work independently or as co-investigators on smaller-scale projects into collaborative centers and groups” 1. Thus, team science occurs when artificial boundaries such as departments and institutions are crossed, allowing collaboration in integrated networks. Over the past two decades, the concept has received increasing attention to better understand and address global challenges 2. In 2007, Stefan Wuchty et al. examined 19.9 million research articles in the Institute for Scientific Information Web of Science database and 2.1 million patent records on multiple topics. They concluded that a team-authored paper has increased probability of being highly cited 3. The systems being formed through interdisciplinary collaborations help teams reach achievements that individual researchers are less likely to accomplish. Kohane pointed out 4 that precision medicine in particular requires a higher level of coordination between various agencies and suggests the boundaries between research projects and clinical care institutions should be blurred to link gathered data. The exponential growth and causal interdependencies of ‘-omics’ fields dictate that expertise across disciplines is essential to making meaningful and durable contributions to the understanding of human biology. OBJECTIVE This brief viewpoint aims to explore the impact of cross-institution team science on the development of precision medicine. We hypothesized that international organizations with co-leaders tend to publish more impactful papers than organizations without. Using Pearson's chi-square test and the Mann-Whitney U test, we validated our hypothesis. METHODS Information was collected from the eHealth Catalogue of Activities developed by the nonprofit Global Alliance for Genomics and Health (GA4GH) in 2015 5. The catalog lists international genomic and clinical data-sharing initiatives, and the eHealth Task Team updated the catalog through 2017. The data on the executive leadership team and publications were obtained from the websites of these organizations. If such information was not found, additional data were acquired by directly contacting the organizations or searching on Google Scholar. The impact of papers was evaluated by their number of citations, a criterion of research quality 3. In this paper, co-leadership means that a person holds a leadership position in different organizations concurrently. If two papers from separate organizations have at least one author in common, these two organizations are regarded as having a co-author relationship. Nonparametric tests were performed to verify the hypothesis. We used SPSS version 22.0 (SPSSInc) and R to perform two-tailed tests with an α level of .05. The significance of the correlation between the nominal variables co-leadership and co-authorship was examined by Pearson's chi-square test of independence and expressed in a contingency table. Pearson's chi-square test of goodness of fit was adopted to evaluate whether organizations with co-leaders had a greater number of publications than organizations without, and the Mann-Whitney U test was used to examine whether the former organizations published papers that received more citations than the latter. RESULTS We analyzed data from 69 organizations in the catalog and found 16 pairs with co-leader relationships in 2015. Among the 374 publications from these organizations at that time, 13 pairs had co-authors. By 2017, the number of institutions in the catalog increased to 87, and there were 37 pairs with co-leadership, corresponding to 30 organizations. Information on 7,064 papers was collected, showing that 55 organizations had co-authored publications, with 436 papers in total. A. Number of publications The chi-square goodness of fit test suggests that the number of papers being published is strongly correlated with the category of the organization - organizations in a co-leadership network or organizations without a co-leadership (P<0.001, 2015 & 2017). B. Quality of publications The citation number of each paper was obtained from Google Scholar. The results of the Mann-Whitney U test indicated that the number of citations received by publications of organizations with and without co-leaders differed significantly (Z=-13.547, p<0.001, 2017). Papers from the former organizations had a higher mean rank (3603.35 for the group of papers whose publishers are in the co-leadership network, and 2702.67 for the other group), which means that the organizations with co-leaders tended to have a greater number of highly cited papers. C. Relationship between co-leader and co-author In the chi-square test of independence, the total sample size is the number of lines in a fully connected diagram. The results indicate that in both 2015 and 2017, organizations with co-leaders tended to publish papers together, suggesting that co-leadership will lead to co-authorship (P<0.001, 2015 & 2017). CONCLUSIONS These results illustrate the concept of meta-topical brainforests in precision medicine and may have broader implication: cross-enterprise cooperation plays an essential role in solving complex issues. As a field-crossing example, Sovacool suggested researchers should incorporate expertise and data from indigenous groups to address global environmental challenges 6. One hopes the analogy persists and the extraordinary natural future-proofing mechanisms in rainforests by incorporating novel combinations of ancestral DNA coincide with similar continued diversification in research networks and widely impactful publication.

F1000Research ◽  
2019 ◽  
Vol 8 ◽  
pp. 1899
Author(s):  
Anna Mae Scott ◽  
Mina Bakhit ◽  
Justin Clark ◽  
Melanie Vermeulen ◽  
Mark Jones ◽  
...  

Background: The impact of school holidays on influenza rates has been sparsely documented in Australia. In 2019, the early winter influenza season coincided with mid-year school breaks, enabling us the unusual opportunity to examine how influenza incidence changed during school closure dates. Methods: The weekly influenza data from five Australian state and one territory health departments for the period of week 19 (mid-May) to week 35 (early September) 2019 were compared to each state’s public school closure dates. We used segmented regression to model the weekly counts and a negative binomial distribution to account for overdispersion due to autocorrelation. The models’ goodness-of-fit was assessed by plots of observed versus expected counts, plots of residuals versus predicted values, and Pearson’s Chi-square test. The main exposure was the July two-week school vacation period, using a lag of one week. The effect is estimated as a percent change in incidence level, and in slope. We also dichotomized the change in weekly counts into decreases versus increases (or no change). The proportion of decreases were then compared for each of three periods (pre-vacation, vacation, post-vacation) using Fishers exact test. Results: School holidays were associated with significant declines in influenza incidence. The models showed acceptable goodness-of-fit. The numbers and percentages of decreases in weekly influenza counts from the previous week for all states combined were: 19 (33%) pre-vacation; 11 (92%) decreases during the vacation; and 19 (59%) decreases post-vacation (P=0.0002). The first decline during school holidays is seen in the school aged (5-19 years) population, with the declines in the adult and infant populations being smaller and following a week later. Conclusions: Given the significant and rapid reductions in incidence, these results have important public health implications. Closure or extension of holiday periods could be an emergency option for state governments.


F1000Research ◽  
2021 ◽  
Vol 8 ◽  
pp. 1899
Author(s):  
Anna Mae Scott ◽  
Mina Bakhit ◽  
Justin Clark ◽  
Melanie Vermeulen ◽  
Mark Jones ◽  
...  

Background: The impact of school holidays on influenza rates has been sparsely documented in Australia. In 2019, the early winter influenza season coincided with mid-year school breaks, enabling us the unusual opportunity to examine how influenza incidence changed during school holiday closure dates. Methods: The weekly influenza data from five Australian state and one territory health departments for the period of week 19 (mid-May) to week 39 (early October) 2019 were compared to each state’s public-school holiday closure dates. We used segmented regression to model the weekly counts and a negative binomial distribution to account for overdispersion due to autocorrelation. The models’ goodness-of-fit was assessed by plots of observed versus expected counts, plots of residuals versus predicted values, and Pearson’s Chi-square test. The main exposure was the July two-week school holiday period, using a lag of one week. The effect is estimated as a percent change in incidence level, and in slope. Results: School holidays were associated with significant declines in influenza incidence in three states and one territory by between 41% and 65%. Two states did not show evidence of declines although one of those states had already passed its peak by the time of the school holidays. The models showed acceptable goodness-of-fit. The first decline during school holidays is seen in the school aged (5-19 years) population, with the declines in the adult and infant populations being smaller and following a week later. Conclusions: Given the significant and rapid reductions in incidence, these results have important public health implications. Closure or extension of holiday periods could be an emergency option for state governments.


F1000Research ◽  
2020 ◽  
Vol 8 ◽  
pp. 1899
Author(s):  
Anna Mae Scott ◽  
Mina Bakhit ◽  
Justin Clark ◽  
Melanie Vermeulen ◽  
Mark Jones ◽  
...  

Background: The impact of school holidays on influenza rates has been sparsely documented in Australia. In 2019, the early winter influenza season coincided with mid-year school breaks, enabling us the unusual opportunity to examine how influenza incidence changed during school holiday closure dates. Methods: The weekly influenza data from five Australian state and one territory health departments for the period of week 19 (mid-May) to week 39 (early October) 2019 were compared to each state’s public-school holiday closure dates. We used segmented regression to model the weekly counts and a negative binomial distribution to account for overdispersion due to autocorrelation. The models’ goodness-of-fit was assessed by plots of observed versus expected counts, plots of residuals versus predicted values, and Pearson’s Chi-square test. The main exposure was the July two-week school holiday period, using a lag of one week. The effect is estimated as a percent change in incidence level, and in slope. Results: School holidays were associated with significant declines in influenza incidence in three states and one territory by between 41% and 65%. Two states did not show evidence of declines although one of those states had already passed its peak by the time of the school holidays. The models showed acceptable goodness-of-fit. The first decline during school holidays is seen in the school aged (5-19 years) population, with the declines in the adult and infant populations being smaller and following a week later. Conclusions: Given the significant and rapid reductions in incidence, these results have important public health implications. Closure or extension of holiday periods could be an emergency option for state governments.


2019 ◽  
Vol 8 (4) ◽  
pp. 11368-11377

This paper projects a financial model involving key capital market financial variables such as FPI shareholding, Market Price, Earning Per Share (EPS), Price to Earnings Ratio (P/E Ratio), Book Value, Price to Book Value (P/B Ratio), Dividend Yield, Enterprise Value, Market Capitalisation, Beta, Net Profit and Operating Profit and determines the impact of these financial variables on the FPI shareholding of the Banks. The selected private banks include: Axis Bank Ltd., HDFC Bank Ltd., Kotak Mahindra Bank Ltd., Yes Bank Ltd. and ICICI Bank Ltd.The Study is based on 14 yearsQuarterly data from June 2005 to March 2019, obtained from secondary sources. The statistical tools used for the study are Analysis of Variance, Karl Pearson Coefficient of Correlation, Regression and Chi- Square Test for Goodness of Fit to test hypothesis of the study. The data was analysed using statistical packages for social sciences.Our study concludes that different financial variables impacted the FPI shareholding of each selected banks. It was also found that the model framed was a Good fit to the FPI shareholding of all the select banks.This model will help to estimate the future values of FPI shareholding of the selected banks provided the values of significant financial variable corresponding to the required period is known.


2020 ◽  
Vol 9 (1) ◽  
pp. 84-88
Author(s):  
Govinda Prasad Dhungana ◽  
Laxmi Prasad Sapkota

 Hemoglobin level is a continuous variable. So, it follows some theoretical probability distribution Normal, Log-normal, Gamma and Weibull distribution having two parameters. There is low variation in observed and expected frequency of Normal distribution in bar diagram. Similarly, calculated value of chi-square test (goodness of fit) is observed which is lower in Normal distribution. Furthermore, plot of PDFof Normal distribution covers larger area of histogram than all of other distribution. Hence Normal distribution is the best fit to predict the hemoglobin level in future.


2021 ◽  
pp. 112067212110280
Author(s):  
Maria L Salvetat ◽  
Carlo Salati ◽  
Patrizia Busatto ◽  
Marco Zeppieri

Purpose: To assess ocular pathologies admitted to Italian Emergency Eye Departments (EEDs) during the COVID-19 pandemic national lockdown in 2020 in comparison with the same period in 2019. Methods: Electronic records of all patients presenting at EEDs of two tertiary-care Eye Centers during the COVID-19 national lockdown in Italy (March 10–May 3, 2020) were compared with the equivalent period in 2019. Main outcomes were patient age, gender, and diagnoses. Statistical analysis included unpaired Student t-tests, Poisson regression, and chi-square test. Results: Overall EED visits significantly decreased by 54.1% during the 2020 lockdown compared to 2019 (851 vs 1854, p < 0.001). During lockdown, patients showed comparable mean age (52.8 years in 2020 vs 53.3 years in 2019, p = 0.52) and significant male gender bias (61.1% in 2020 vs 55.8% in 2019, p < 0.0001). The most frequent pathologies were eye inflammations, trauma-related incidents, and spontaneous acute vitreous detachment. Patients with inflammation, headache/hemicrania, and spontaneous subconjunctival hemorrhages were significantly less, whereas those with trauma-related diagnoses were significantly higher during the lockdown as compared with 2019 ( p < 0.05). The proportion of non-urgent visits decreased from 17% in 2019 to 8% in 2020 ( p < 0.001). Conclusions: During the 2020 lockdown, there was a significant reduction of accesses to EED, especially for non-urgent pathologies. Potentially visual function threatening conditions, such as trauma-related pathologies, retinal detachment or ruptures, and wet AMD, showed lower number of cases but higher or stable proportion relative to the total caseload, suggesting a correct and efficient access to ophthalmic health care during the pandemic period.


2018 ◽  
Vol 4 (4) ◽  
pp. 295-300 ◽  
Author(s):  
F.O. Miantsia ◽  
F. Meutchieye ◽  
S. Niassy

The current work is aimed at generating information on giant crickets and the impact of commonly used pesticides on the natural population of these crickets. Data was collected based on interviews and complemented with field observations. Out of 319 respondents surveyed, 290 were aware of the use of the giant cricket as a food source, and 161 were active consumers. Regarding the availability of the giant cricket, respondents reported that the crickets’ populations were diminishing because of farming practices. About 219 persons reported that commonly used herbicides harm giant crickets at different stages. This could be attributed to the scarcity of this species, as mentioned by 233 respondents. The results showed that 130 respondents were engaged in gathering giant crickets for consumption. This insect gathering is related to soil tilling. Chi-square test showed a significant dependence relationship between herbicides use and cricket scarcity. Although less than a majority (129) of respondents are making regular use of persistent pesticides (herbicides), it has been observed that intensive use of pesticides could become a popular practice in smallholder farming categories. This paper thus suggests the need for training and surveillance concerning the trade of pesticides in the region and proposes further investigations into pesticides residues or traces in collected giant crickets consumed in the study site and in all areas with similar conditions.


2015 ◽  
Vol 123 (3) ◽  
pp. 561-570 ◽  
Author(s):  
Christopher S. Lozano ◽  
Joseph Tam ◽  
Abhaya V. Kulkarni ◽  
Andres M. Lozano

OBJECT Recent works have assessed academic output across neurosurgical programs using various analyses of accumulated citations as a proxy for academic activity and productivity. These assessments have emphasized North American neurosurgical training centers and have largely excluded centers outside the United States. Because of the long tradition and level of academic activity in neurosurgery at the University of Toronto, the authors sought to compare that program's publication and citation metrics with those of established programs in the US as documented in the literature. So as to not rely on historical achievements that may be of less relevance, they focused on recent works, that is, those published in the most recent complete 5-year period. METHODS The authors sought to make their data comparable to existing published data from other programs. To this end, they compiled a list of published papers by neurosurgical faculty at the University of Toronto for the period from 2009 through 2013 using the Scopus database. Individual author names were disambiguated; the total numbers of papers and citations were compiled on a yearly basis. They computed a number of indices, including the ih(5)-index (i.e., the number of citations the papers received over a 5-year period), the summed h-index of the current faculty over time, and a number of secondary measures, including the ig(5), ie(5), and i10(5)-indices. They also determined the impact of individual authors in driving the results using Gini coefficients. To address the issue of author ambiguity, which can be problematic in multicenter bibliometric analyses, they have provided a source dataset used to determine the ih(5) index for the Toronto program. RESULTS The University of Toronto Neurosurgery Program had approximately 29 full-time surgically active faculty per year (not including nonneurosurgical faculty) in the 5-year period from 2009 to 2013. These faculty published a total of 1217 papers in these 5 years. The total number of citations from these papers was 13,434. The ih(5)-index at the University of Toronto was 50. CONCLUSIONS On the basis of comparison with published bibliometric data of US programs, the University of Toronto ranks first in terms of number of publications, number of citations, and ih(5)-index among neurosurgical programs in North America and most likely in the world.


2020 ◽  
Vol 13 (4) ◽  
pp. 614-621
Author(s):  
Sara E. Ibrahim Mohamed ◽  
Romaz M. Ahmed ◽  
Khaleel I. Z. Jawasreh ◽  
M. A. M. Salih ◽  
Dalia Mursi Abdelhalim ◽  
...  

Background and Aim: The Watish sheep is a strain of desert sheep of smaller size compared to other desert sheep ecotypes, and there is anecdotal evidence that it is endowed with high litter size. The present study was designed for screening for polymorphisms in the known fecundity genes (bone morphogenetic protein receptor type 1B A<G in exon 6, bone morphogenetic protein 15 (BMP15) (FecXB, FecXG, FecXH, and FecXI) in exon2, growth differentiation factor 9 (GDF9) – G1 in exon1 and G8 in exon2 and PRLG<A in intron2) and their association with litter size in Watish. Materials and Methods: The study involved 156 Watish ewes of 2-6 years of age, along with data on litter size in the first, second, and third parity from Sinnar state and contiguous Blue Nile State. Genomic DNA was isolated and genotyped using polymerase chain reaction-restriction fragment length polymorphism. Allele and genotype frequencies were calculated by direct counting. Chi-square test for goodness of fit was performed for agreement with Hardy-Weinberg expectations and association testing. Results: The results demonstrated that all individuals were non-carriers for the target mutations of FecB, BMP15 (FecXB, FecXH, and FecXI), and GDF9-G8. With regard to the GDF9-G1 gene, the genotypic frequencies were 0.07% (G+) and 0.93% (++), in FecXG gene they were 0.993% (++) and 0.006% (B+), in PRL gene 0.516(++), 0.347(B+), and 0.137(BB). The Chi-square test showed a non-significant association between ewe's type of birth and the detected mutations genotypes. Conclusion: These results preliminarily indicated that GDF9-G1, BMP15 (FecXG), and PRL genes might have had some contribution for improving litter size in Watish Sudanese sheep. However, further studies using larger samples are needed to detect the effects of those mutations on Watish sheep litter size.


Author(s):  
Ch.Narahari Et. al.

In the present study we analyze the employees’ perception towards coping measures adopted byfirms in software industry. The considered coping constructs adopted for the study in stress abatement areVenting of Emotions,Problem Focused, Seeking Information and emotional support, Positive Emotion-Focused, were, employee perception was acquired by a systematic survey.A total sample of 800 employees’perceptions have been collected through simple random technique and out of which survey respondents, irregular responses are eliminated finally 756 samples are determined for statistical analysis. Chi-square test was performed to determine the association between perceptions and model constructs. Results are reported and discussions are made as per the results and in correlation between results of previous literature.Finally, suggestions and future indication for extension of the study are proposed.


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