scholarly journals Detection of Amino Acid Mutations in Dihydrofolate Reductase & Dihydro Pteroate Synthase Gene in Plasmodium Vivax Isolates

2020 ◽  
Vol 19 (02) ◽  
pp. 102-108
2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Xingyi Jin ◽  
Sujuan Zhu ◽  
Weimin Xu ◽  
Junfang Chen ◽  
Wei Ruan ◽  
...  

Abstract Background Malaria causes major public health problems globally and drug resistance hinders its control and elimination. Molecular markers associated with drug resistance are considered as a beneficial tool to monitor the disease trends, evolution and distribution so as to help improve drug policy. Methods We collected 148 Plasmodium falciparum and 20 Plasmodium vivax isolates imported into Hangzhou city, China between 2014 and 2019. k13 gene of P. falciparum and k12 of P. vivax were sequenced. Polymorphisms and prevalence of k13 and k12 were analyzed. Results Most (98.65%, 146/148) P. falciparum infections were imported from Africa, and half P. vivax cases came from Africa and the other half from Asia. Nucleotide mutation prevalence was 2.03% (3/148) and the proportion of amino acid mutations was 0.68% (1/148). The amino acid mutation, A676S, was observed in an isolate from Nigeria. No mutation of k12 was observed from the parasites from African and Asian countries. Conclusions Limited polymorphism in k13 gene of P. falciparum isolates imported from African countries, but no evidence for the polymorphism of k12 in P. vivax samples from African and Asian countries was found. These results provide information for drug policy update in study region.


2019 ◽  
Vol 56 (2) ◽  
pp. 170 ◽  
Author(s):  
Gholamreza Hatam ◽  
Somayeh Maghsoodloorad ◽  
Nahid Hosseinzadeh ◽  
Ali Haghighi ◽  
Rahmat Solgi ◽  
...  

2004 ◽  
Vol 48 (6) ◽  
pp. 2214-2222 ◽  
Author(s):  
Michael Korsinczky ◽  
Katja Fischer ◽  
Nanhua Chen ◽  
Joanne Baker ◽  
Karl Rieckmann ◽  
...  

ABSTRACT Sulfadoxine is predominantly used in combination with pyrimethamine, commonly known as Fansidar, for the treatment of Plasmodium falciparum. This combination is usually less effective against Plasmodium vivax, probably due to the innate refractoriness of parasites to the sulfadoxine component. To investigate this mechanism of resistance by P. vivax to sulfadoxine, we cloned and sequenced the P. vivax dhps (pvdhps) gene. The protein sequence was determined, and three-dimensional homology models of dihydropteroate synthase (DHPS) from P. vivax as well as P. falciparum were created. The docking of sulfadoxine to the two DHPS models allowed us to compare contact residues in the putative sulfadoxine-binding site in both species. The predicted sulfadoxine-binding sites between the species differ by one residue, V585 in P. vivax, equivalent to A613 in P. falciparum. V585 in P. vivax is predicted by energy minimization to cause a reduction in binding of sulfadoxine to DHPS in P. vivax compared to P. falciparum. Sequencing dhps genes from a limited set of geographically different P. vivax isolates revealed that V585 was present in all of the samples, suggesting that V585 may be responsible for innate resistance of P. vivax to sulfadoxine. Additionally, amino acid mutations were observed in some P. vivax isolates in positions known to cause resistance in P. falciparum, suggesting that, as in P. falciparum, these mutations are responsible for acquired increases in resistance of P. vivax to sulfadoxine.


2008 ◽  
Vol 78 (3) ◽  
pp. 462-467 ◽  
Author(s):  
Kanchana Rungsihirunrat ◽  
Kesara Na-Bangchang ◽  
Mathirut Mungthin ◽  
Carol Hopkins Sibley

2006 ◽  
Vol 75 (4) ◽  
pp. 617-621 ◽  
Author(s):  
ALYSON AULIFF ◽  
QIN CHENG ◽  
MICHAEL T. O’NEIL ◽  
JASON MAGUIRE ◽  
QI GAO ◽  
...  

2016 ◽  
Vol 15 (1) ◽  
Author(s):  
Naowarat Saralamba ◽  
Supatchara Nakeesathit ◽  
Mayfong Mayxay ◽  
Paul N. Newton ◽  
Lyda Osorio ◽  
...  

2021 ◽  
Vol 14 (1) ◽  
pp. 445-453
Author(s):  
Semuel Sandy ◽  
Irawaty Wike

Purpose: In this review, the compound 6-prenylapigenin was identified as a potential wild type Plasmodium vivax dihydrofolate reductase (PDB ID: 2BL9) protein receptor inhibitor through a series of computer-assisted drug design processes, to highlight important interactions between ligand and 2BL9 receptor protein and determine drug properties. proposed as a 2BL9 inhibiting agent. Methods: The in silico study used secondary data including Plasmodium vivax protein receptor (PDB ID: 2BL9), 6-Prenylapigenin compound (PubChem ID: 10382485), and native ligand Pyrimethamine (PubChem ID: 4993) as a comparison. In silico analysis using software, including AutoDock v 4.2.3, admetSAR v 2.0, Lipinski Role Of Five, PROCHECK SAVES v 6.0, LigPlus + v 2.2 and the Discovery Studio 2016. Results: The study results showed that the free energy of the Gibbs bonding compound 6-Prenylapigenin is -7.61 kcal/mol with an inhibition constant is 2.65 nM. Types of hydrogen bonding to the amino acid residues Asp53 (A) and Ile173 (A). Hydrophobic extraction of the amino acid residues were Tyr125 (A); Met54 (A); Leu128 (A); Phe57 (A); Ala15 (A); Cys14 (A); Leu39 (A); Leu45 (A); and Tyr179 (A). In silico studies, this compound also has good toxicity and bioavailability properties. Conclusion: 6-Prenylapigenin compound has an inhibitor activity at the active site of the 2BL9 protein receptor by forming hydrogen bonding and hydrophobic interactions. This compound has good toxicity and bio availability so that it may be developed as a dihydrofolate reductase enzyme inhibitor compound.


1984 ◽  
Vol 259 (19) ◽  
pp. 12291-12298 ◽  
Author(s):  
D P Baccanari ◽  
R L Tansik ◽  
S J Paterson ◽  
D Stone

2021 ◽  
pp. 1-13
Author(s):  
Salvatore Dimonte ◽  
Muhammed Babakir-Mina ◽  
Taib Hama-Soor ◽  
Salar Ali

<b><i>Introduction:</i></b> SARS-CoV-2 is a new type of coronavirus causing a pandemic severe acute respiratory syndrome (SARS-2). Coronaviruses are very diverting genetically and mutate so often periodically. The natural selection of viral mutations may cause host infection selectivity and infectivity. <b><i>Methods:</i></b> This study was aimed to indicate the diversity between human and animal coronaviruses through finding the rate of mutation in each of the spike, nucleocapsid, envelope, and membrane proteins. <b><i>Results:</i></b> The mutation rate is abundant in all 4 structural proteins. The most number of statistically significant amino acid mutations were found in spike receptor-binding domain (RBD) which may be because it is responsible for a corresponding receptor binding in a broad range of hosts and host selectivity to infect. Among 17 previously known amino acids which are important for binding of spike to angiotensin-converting enzyme 2 (ACE2) receptor, all of them are conservative among human coronaviruses, but only 3 of them significantly are mutated in animal coronaviruses. A single amino acid aspartate-454, that causes dissociation of the RBD of the spike and ACE2, and F486 which gives the strength of binding with ACE2 remain intact in all coronaviruses. <b><i>Discussion/Conclusion:</i></b> Observations of this study provided evidence of the genetic diversity and rapid evolution of SARS-CoV-2 as well as other human and animal coronaviruses.


Genes ◽  
2020 ◽  
Vol 12 (1) ◽  
pp. 29
Author(s):  
Lilia González-Cerón ◽  
José Cebrián-Carmona ◽  
Concepción M. Mesa-Valle ◽  
Federico García-Maroto ◽  
Frida Santillán-Valenzuela ◽  
...  

Plasmodium vivax Cysteine-Rich Protective Antigen (CyRPA) is a merozoite protein participating in the parasite invasion of human reticulocytes. During natural P. vivax infection, antibody responses against PvCyRPA have been detected. In children, low anti-CyRPA antibody titers correlated with clinical protection, which suggests this protein as a potential vaccine candidate. This work analyzed the genetic and amino acid diversity of pvcyrpa in Mexican and global parasites. Consensus coding sequences of pvcyrpa were obtained from seven isolates. Other sequences were extracted from a repository. Maximum likelihood phylogenetic trees, genetic diversity parameters, linkage disequilibrium (LD), and neutrality tests were analyzed, and the potential amino acid polymorphism participation in B-cell epitopes was investigated. In 22 sequences from Southern Mexico, two synonymous and 21 nonsynonymous mutations defined nine private haplotypes. These parasites had the highest LD-R2 index and the lowest nucleotide diversity compared to isolates from South America or Asia. The nucleotide diversity and Tajima’s D values varied across the coding gene. The exon-1 sequence had greater diversity and Rm values than those of exon-2. Exon-1 had significant positive values for Tajima’s D, β-α values, and for the Z (HA: dN > dS) and MK tests. These patterns were similar for parasites of different origin. The polymorphic amino acid residues at PvCyRPA resembled the conformational B-cell peptides reported in PfCyRPA. Diversity at pvcyrpa exon-1 is caused by mutation and recombination. This seems to be maintained by balancing selection, likely due to selective immune pressure, all of which merit further study.


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