scholarly journals Defining an epidemiological landscape by connecting host movement to pathogen transmission

Author(s):  
Kezia Manlove ◽  
Mark Wilber ◽  
Lauren White ◽  
Guillaume Bastille-Rousseau ◽  
Anni Yang ◽  
...  

Environment drives the host movements that shape pathogen transmission through three mediating processes: host density, host mobility, and contact. These processes combine with pathogen life-history to give rise to an “epidemiological landscape” that determines spatial patterns of pathogen transmission. Yet despite its central role in transmission, strategies for predicting the epidemiological landscape from real-world data remain limited. Here, we develop the epidemiological landscape as an interface between movement ecology and spatial epidemiology. We propose a movement-pathogen pace-of-life heuristic for prioritizing the landscape’s central processes by positing that spatial dynamics for fast pace-of-life pathogens are best-approximated by the spatial ecology of host contacts; spatial dynamics for slower pace-of-life pathogens are best approximated by host densities; and spatial dynamics for pathogens with environmental reservoirs reflect a convolution of those densities with the spatial configuration of environmental reservoir sites. We then identify mechanisms that underpin the epidemiological landscape and match each mechanism to emerging tools from movement ecology. Finally, we outline workflows for describing the epidemiological landscape and using it to predict subsequent patterns of pathogen transmission. Our framework links transmission to environmental context, providing a scaffold for mechanistically understanding how environmental context can generate and shift existing patterns in spatial epidemiology.

2010 ◽  
Vol 10 (5) ◽  
pp. 957-966 ◽  
Author(s):  
F. J. Oddi ◽  
N. Dudinszky ◽  
L. Ghermandi

Abstract. Fire is a critical disturbance in the structuring and functioning of most Mediterranean ecosystems. In northwestern Patagonia, vegetation patterns are strongly influenced by fire and environmental heterogeneity. Dendroecology, together with satellite imagery and GIS, have been demonstrated to be useful tools in studies that relate to fire effects with patches, patterns and species dynamics at landscape scale. Such studies can be approached from landscape ecology, which has evolved in the last years supported by the development of remote sensing and GIS technologies. This study evaluates the spatial dynamic of F. imbricata in response to fire using remote sensing, GIS and dendrochronology techniques, at landscape scale. Two sites were evaluated and one of them was affected by fire in the year 1999. The digital processing images (using the NBR spectral index) and the dendroecological analysis verified this. A fire, occurring in 1978, was also detected by the analysis of F. imbricata growth rings. The relation between F. imbricata shrubland dynamics and spatial configuration with fire, land topography and hydrography was established in the study area.


2013 ◽  
Vol 103 (10) ◽  
pp. 1012-1019 ◽  
Author(s):  
S. Poggi ◽  
F. M. Neri ◽  
V. Deytieux ◽  
A. Bates ◽  
W. Otten ◽  
...  

Propagation systems for seedling growth play a major role in agriculture, and in notable cases (such as organic systems), are under constant threat from soil and seedborne fungal plant pathogens such as Rhizoctonia solani or Pythium spp. Yet, to date little is known that links the risk of disease invasion to the host density, which is an agronomic characteristic that can be readily controlled. We introduce here, for the first time in an agronomic system, a percolation framework to analyze the link. We set up an experiment to study the spread of the ubiquitous fungus R. solani in replicated propagation systems with different planting densities, and fit a percolation-based epidemiological model to the data using Bayesian inference methods. The estimated probability of pathogen transmission between infected and susceptible plants is used to calculate the risk of invasion. By comparing the transmission probability and the risk values obtained for different planting densities, we are able to give evidence of a nonlinear relationship between disease invasion and the inter-plant spacing, hence to demonstrate the existence of a spatial threshold for epidemic invasion. The implications and potential use of our methods for the evaluation of disease control strategies are discussed.


2002 ◽  
Vol 92 (6) ◽  
pp. 597-602 ◽  
Author(s):  
Patricia E. Maloney ◽  
David M. Rizzo

We determined the spatial pattern of dwarf mistletoe (Arceuthobium spp.) associated with two different conifer hosts, white fir (Abies concolor) and Jeffrey pine (Pinus jeffreyi), in forests around the Lake Tahoe Basin and at the Teakettle Experimental Forest, both located in the Sierra Nevada. We also examined a number of host variables and bark beetle incidence to determine how these factors might be involved in the Arceuthobium—conifer interaction. There was no significant relationship between dwarf mistletoe-infected trees and associated bark beetles. We found the highest incidence of dwarf mistletoe on Jeffrey pine in Lake Tahoe (87%), followed by dwarf mistletoe on white fir in Lake Tahoe (30%), with the lowest incidence on white fir at Teakettle (27%). Dwarf mistletoe incidence on white fir in our Lake Tahoe grid was not correlated to density but the dwarf mistletoe rating (DMR) was positively correlated to host size. At the Teakettle Forest, dwarf mistletoe incidence on white fir was not correlated with host density but the DMR was correlated with host size. Dwarf mistletoe incidence and DMR on Jeffrey pine were correlated with host density. Individuals, of both conifer species, in all diameter size classes were susceptible to dwarf mistletoe, with the lowest infection rate in the seedling-10-cm-diameter class. Arceuthobium on white fir in Lake Tahoe showed spatial dependence to a range of 20 m. However, Arceuthobium on Jeffrey pine in Lake Tahoe and on white fir at Teakettle showed no clear pattern of spatial structuring. The degree of infection and stand history appear to be important in the spatial dynamics of Arceuthobium spp.


2019 ◽  
Author(s):  
Lauren A. White ◽  
Sue VandeWoude ◽  
Meggan E. Craft

AbstractMechanistic portrayals of how animals form and maintain territories remain rare, and as a discipline, collective movement ecology has tended to focus on synergistic (e.g., migration, shoaling) rather than agonistic or territorial interactions. Here we ask how dynamic territory formation and maintenance might contribute to disease dynamics in an asocial territorial animal for an indirectly transmitted pathogen. We developed a mechanistic individual-based model where stigmergy—the deposition of signals into the environment (e.g., scent marking, scraping)—dictates not only local movement choices and long-term territory formation, but also the risk of pathogen transmission. Based on a variable importance analysis, the length of the infectious period was the single most important variable in predicting outbreak success, maximum prevalence, and outbreak duration. Population size and rate of pathogen decay were also key predictors. We found that territoriality best reduced maximum prevalence in conditions where we would otherwise expect outbreaks to be most successful: slower recovery rates (i.e., longer infectious periods) and higher conspecific densities. However, at high enough densities, outbreak duration became considerably more variable. Our findings therefore support a limited version of the “territoriality benefits” hypothesis—where reduced home range overlap leads to reduced opportunities for pathogen transmission, but with the caveat that reduction in outbreak severity may increase the likelihood of pathogen persistence. For longer infectious periods and higher host densities, key trade-offs emerged between the strength of pathogen load, strength of the stigmergy cue, and the rate at which those two quantities decayed; this finding raises interesting questions about the evolutionary nature of these competing processes and the role of possible feedbacks between parasitism and territoriality. This work also highlights the importance of considering social cues as part of the movement landscape in order to improve our understanding of the consequences of individual behaviors on population level outcomes.Author summaryMaking decisions about conservation and disease management relies on our understanding of what allows animal populations to be successful. However, movement ecology, as a field, tends to focus on how animals respond to their abiotic environment. Similarly, disease ecology often focuses on the social behavior of animals without accounting for their individual movement patterns. We developed a simulation model that bridges these two fields by allowing hosts to inform their movement based on the past trajectories of other hosts. As hosts navigate their environment, they leave behind a scent trail while avoiding the scent trails of other individuals. We wanted to know if this means of territory formation could heighten or dampen disease spread when infectious hosts leave pathogens in their wake. We found that territoriality could inhibit disease spread under conditions that we would normally expect pathogens to be most successful: where there are many hosts on the landscape and hosts stay infectious for longer. This work points to how incorporating movement behavior into disease models can provide improved understanding of how diseases spread in wildlife populations; such understanding is particularly important in the face of combatting ongoing and emerging infectious diseases.


Author(s):  
Amin Mojtahedi ◽  
◽  
So-Yeon Yoon ◽  
Tahereh A. Hosseini ◽  
Diego H. Diaz Martinez ◽  
...  

To deliver an innovative design, architects often need to innovate in the ways they empathize with and understand the user. In his 1994 essay, the American Pragmatist philosopher Richard Rorty writes that “one should stop worrying about whether what one believes is well-grounded and start worrying about whether one has been imaginative enough to think up interesting alternatives to one’s present beliefs”1. This study, primarily, explores an interdisciplinary approach in which data collection, analysis, and interpretation are used as drivers of inspiration as well as tools of validation. A combination of tools and techniques labeled as people-space analytics was used to investigate the socio-spatial dynamics of work in the workplace of a national architecture firm. The results were later interpreted from a certain lens in the community of practice theory. A secondary goal of this research project is to study how workplace’s spatial configuration and key people and places are involved in organizational learning and knowledge practices. Therefore, a set of metrics and measures were used to interpret different employees’ recurrent patterns of communication and flow of information between people from different social networks in a spatial context."


2014 ◽  
Vol 369 (1643) ◽  
pp. 20130195 ◽  
Author(s):  
Somayeh Dodge ◽  
Gil Bohrer ◽  
Keith Bildstein ◽  
Sarah C. Davidson ◽  
Rolf Weinzierl ◽  
...  

Variation is key to the adaptability of species and their ability to survive changes to the Earth's climate and habitats. Plasticity in movement strategies allows a species to better track spatial dynamics of habitat quality. We describe the mechanisms that shape the movement of a long-distance migrant bird (turkey vulture, Cathartes aura ) across two continents using satellite tracking coupled with remote-sensing science. Using nearly 10 years of data from 24 satellite-tracked vultures in four distinct populations, we describe an enormous amount of variation in their movement patterns. We related vulture movement to environmental conditions and found important correlations explaining how far they need to move to find food (indexed by the Normalized Difference Vegetation Index) and how fast they can move based on the prevalence of thermals and temperature. We conclude that the extensive variability in the movement ecology of turkey vultures, facilitated by their energetically efficient thermal soaring, suggests that this species is likely to do well across periods of modest climate change. The large scale and sample sizes needed for such analysis in a widespread migrant emphasizes the need for integrated and collaborative efforts to obtain tracking data and for policies, tools and open datasets to encourage such collaborations and data sharing.


2021 ◽  
Vol 17 (6) ◽  
pp. e1009637
Author(s):  
Martina Ferraguti ◽  
Josué Martínez-de la Puente ◽  
Miguel Ángel Jiménez–Clavero ◽  
Francisco Llorente ◽  
David Roiz ◽  
...  

The Dilution Effect Hypothesis (DEH) argues that greater biodiversity lowers the risk of disease and reduces the rates of pathogen transmission since more diverse communities harbour fewer competent hosts for any given pathogen, thereby reducing host exposure to the pathogen. DEH is expected to operate most intensely in vector-borne pathogens and when species-rich communities are not associated with increased host density. Overall, dilution will occur if greater species diversity leads to a lower contact rate between infected vectors and susceptible hosts, and between infected hosts and susceptible vectors. Field-based tests simultaneously analysing the prevalence of several multi-host pathogens in relation to host and vector diversity are required to validate DEH. We tested the relationship between the prevalence in house sparrows (Passer domesticus) of four vector-borne pathogens–three avian haemosporidians (including the avian malaria parasite Plasmodium and the malaria-like parasites Haemoproteus and Leucocytozoon) and West Nile virus (WNV)–and vertebrate diversity. Birds were sampled at 45 localities in SW Spain for which extensive data on vector (mosquitoes) and vertebrate communities exist. Vertebrate censuses were conducted to quantify avian and mammal density, species richness and evenness. Contrary to the predictions of DEH, WNV seroprevalence and haemosporidian prevalence were not negatively associated with either vertebrate species richness or evenness. Indeed, the opposite pattern was found, with positive relationships between avian species richness and WNV seroprevalence, and Leucocytozoon prevalence being detected. When vector (mosquito) richness and evenness were incorporated into the models, all the previous associations between WNV prevalence and the vertebrate community variables remained unchanged. No significant association was found for Plasmodium prevalence and vertebrate community variables in any of the models tested. Despite the studied system having several characteristics that should favour the dilution effect (i.e., vector-borne pathogens, an area where vector and host densities are unrelated, and where host richness is not associated with an increase in host density), none of the relationships between host species diversity and species richness, and pathogen prevalence supported DEH and, in fact, amplification was found for three of the four pathogens tested. Consequently, the range of pathogens and communities studied needs to be broadened if we are to understand the ecological factors that favour dilution and how often these conditions occur in nature.


2012 ◽  
Vol 279 (1747) ◽  
pp. 4574-4581 ◽  
Author(s):  
Marc Choisy ◽  
Pejman Rohani

Prediction and control of the geographical spread of emerging pathogens has become a central public health issue. Because these infectious diseases are by definition novel, there are few data to characterize their dynamics. One possible solution to this problem is to apply lessons learnt from analyses of historical data on familiar and epidemiologically similar pathogens. However, the portability of the spatial ecology of an infectious disease in a different epoch to other infections remains unexamined. Here, we study this issue by taking advantage of the recent re-emergence of pertussis in the United States to compare its spatial transmission dynamics throughout the 1950s with the past decade. We report 4-year waves, sweeping across the continent in the 1950s. These waves are shown to emanate from highly synchronous foci in the northwest and northeast coasts. In contrast, the recent resurgence of the disease is characterized by 5.5-year epidemics with no particular spatial structure. We interpret this to be the result of dramatic changes in patterns of human movement over the second half of the last century, together with changing age distribution of pertussis. We conclude that extrapolation regarding the spatial spread of contemporaneous pathogens based on analyses of historical incidence may be potentially very misleading.


2020 ◽  
Author(s):  
Md Mahbubul Huq Riad ◽  
Lee W Cohnstaedt ◽  
Caterina M Scoglio

Vector-borne disease risk assessment is crucial to optimize surveillance, preventative measures (vector control), and resource allocation (medical supplies). High arthropod abundance and host interaction strongly correlate to vector-borne pathogen transmission. Increasing host density and movement increases the possibility of local and long-distance pathogen transmission. Therefore, we developed a risk assessment framework using climate (average temperature and rainfall) and host demographic (host density and movement) data, particularly suitable for regions with unreported or under-reported incidence data. This framework consisted of a spatiotemporal network-based approach coupled with a compartmental disease model and a non-homogeneous Gillespie algorithm. One-month and two-month lagged temperature and rainfall data have been used to develop the correlation of climate data with vector abundance and host-vector interactions. This correlation can be expressed as vectorial capacity- a parameter, which governs the spreading of infection from an infected host to a susceptible via vectors. As an example, the novel risk assessment framework is applied for dengue in Bangladesh. Vectorial capacity is inferred for each week throughout a year using average monthly temperature and rainfall data, while the whole country is divided into some spatial locations (Upazilas). Long-distance pathogen transmission is expressed with human movement data in the spatiotemporal network. We have identified the spatiotemporal suitability of dengue spreading in Bangladesh as well as the significant-incidence window and peak incidence period. Analysis of yearly dengue data variation suggests the possibility of a significant outbreak with a new serotype introduction. The outcome of the framework comprises of weather-dependent spatiotemporal suitability maps and probabilistic risk maps for spatial infection spreading. This framework is capable of vector-borne disease risk assessment without historical incidence data and can be a useful tool for preparedness with accurate human movement data.


Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 260
Author(s):  
Marc H. Hanke ◽  
Martin H. Posey ◽  
Troy D. Alphin

Intertidal reefs comprised of the eastern oyster (Crassostrea virginica) have long experienced habitat loss, altering habitat patch characteristics of size and distance from edge to interior, potentially influencing spatial dynamics of host-parasite relationships. Using two parasitic relationships, one between eastern oyster host and parasitic oyster pea crab (Zaops ostreum) and the other between a xanthid crab (Eurypanopeus depressus) and a parasitic rhizocephalan barnacle (Loxothylacus panopaei), we examined how host-parasite population characteristics varied on intertidal reefs by season, reef size, and distance from edge to interior. Pea crab prevalence was more related to habitat characteristics rather than host density, as pea crab prevalence was the highest on large reefs and along edges, areas of comparatively lower oyster densities. Reef size did not influence densities of parasitized or non-parasitized xanthid crabs, but densities varied from edge to interior. Non-parasitized xanthids had significantly lower densities along the reef edge compared to more interior reef locations, while parasitized xanthid crabs had no significant edge to interior pattern. Organismal size had a varied relationship based upon habitat characteristics, as pea crab carapace width (CW) varied interactively with season and reef size, whereas CW of parasitized/non-parasitized xanthid crabs varied significantly between edge and interior locations. These results demonstrated that influential habitat characteristics, such as patch size and edge versus interior, are both highly species and host-parasite specific. Therefore, continued habitat alteration and fragmentation of critical marine habitats may further impact spatial dynamics of host-parasite relationships.


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