Распределение механических свойств древесины лиственных пород в годовых кольцах, выявленных методом сканирующего наноиндентирования

The paper presents the results of mechanical properties scanning by means of nanoindentation across the annual growth rings of deciduous trees wood, small-leaved lime (Tilia cordata) and common oak (Quercus robur) in particular. Significant variations in microhardness H and Young’s modulus E radial dependencies have been found for any of the studied species. Results can be useful 1) to amend the understanding the nature of macromechanical properties of various wood species and to reveal the details of their formation depending upon microstructural characteristics, 2) to optimize the technologies of growing, reinforcement and subsequent usage of the wood, 3) to develop new independent methods in dendrochronology and dendroclimatology

Counting using deep learning regression gives value to ecological surveys

Many ecological studies rely on count data and involve manual counting of objects of interest, which is time-consuming and especially disadvantageous when time in the field or lab is limited. However, an increasing number of works uses digital imagery, which opens opportunities to automatise counting tasks. In this study, we use machine learning to automate counting objects of interest without the need to label individual objects. By leveraging already existing image-level annotations, this approach can also give value to historical data that were collected and annotated over longer time series (typical for many ecological studies), without the aim of deep learning applications. We demonstrate deep learning regression on two fundamentally different counting tasks: (i) daily growth rings from microscopic images of fish otolith (i.e., hearing stone) and (ii) hauled out seals from highly variable aerial imagery. In the otolith images, our deep learning-based regressor yields an RMSE of 3.40 day-rings and an $$R^2$$ R 2 of 0.92. Initial performance in the seal images is lower (RMSE of 23.46 seals and $$R^2$$ R 2 of 0.72), which can be attributed to a lack of images with a high number of seals in the initial training set, compared to the test set. We then show how to improve performance substantially (RMSE of 19.03 seals and $$R^2$$ R 2 of 0.77) by carefully selecting and relabelling just 100 additional training images based on initial model prediction discrepancy. The regression-based approach used here returns accurate counts ($$R^2$$ R 2 of 0.92 and 0.77 for the rings and seals, respectively), directly usable in ecological research.

Description of Intra-Annual Changes in Cambial Activity and Differentiation of Secondary Conductive Tissues of Aesculus hippocastanum Trees Affected by the Leaf Miner Cameraria ohridella

Aesculus hippocastanum trees are commonly infested by the leaf miner Cameraria ohridella, whose larval activity causes the destruction of the leaf parenchyma and induces defoliation. Pest attacks result in, e.g., production of smaller fruits and tree re-flowering in autumn. Concerning pest influence on stem structure only scarce information of narrower annual growth rings of wood has been published. Therefore, we determined the effect of the presence of the leaf miner infestation on intra-annual cambial activity and on differentiation of conductive tissues. These data were compared with phenological phases and pest activity. Pest feeding resulted in changes in onset, cessation and duration of cambial divisions, and differentiation of secondary xylem. The duration of cambial activity was about a month shorter in heavily infested trees and was connected with premature tree defoliation. Affected trees were characterised by a reduction in cambial divisions and earlier cessation of wood differentiation resulting in narrower wood rings. Furthermore, the infested trees exhibited altered wood structure, with more vessels of smaller diameters, however these changes did not affect its theoretical hydraulic conductivity. Interestingly, pest attack did not influence secondary phloem differentiation. The probable influence of long-term infestation on tree growth and condition was discussed.

THE EFFECT OF CLIMATE ON THE RADIAL GROWTH OF SCOTS PINE (PINUS SYLVESTRIS L.) IN A COASTAL MIXED STAND IN KAPISUYU, BARTIN, TURKEY

Scots pine is geographically the most widespread pine species in the world, and it shows different growth responses to climate and environmental factors in diverse ecological sites. We studied both the stand dynamics and climate-growth relationships of Scots pine in isolated coastal stand (recently found) in the Western Black Sea Region of Turkey. The homogeneity index of this stand has varied between 1.92-3.56. In growth-ring analyses, after cross-dating of individual chronologies, COFECHA and ARSTAN software were used respectively for chronology quality control and standardization (detrend). In this way, a 58-year-long chronology (1959-2016) of Scots pine was constructed. In addition, DENDROCLIM software was used for investigating Scots pine’s radial growth-climate relationships. Mean sensitivity changed from 0.163 to 0.331, with a mean of 0.183. Mean correlation among trees and signal to noise ratio were 0.389 and 7.012 respectively. In terms of the effect of precipitation on the radial growth of Scots pine in this site, the correlation coefficients were 0.43 (p<0.05) for December of the previous year and 0.41 (p<0.05) for July of the current year. For all the other months, precipitation had a non-significant effect. As for the maximum and mean air temperature, the correlation coefficients were 0.36 (p<0.05) and 0.40 (p<0.05) for February, and 0.40 (p<0.05) and 0.42 (p<0.05) for March, respectively. However, on the radial growth, while the maximum temperature in August had a negative effect (r= -0.26; p<0.05), minimum temperatures in February, March and July had a positive effect (r= 0.39, 0.40 and 0.34 respectively; p<0.05). It means while higher rains in July and higher temperatures in the late winter-early spring have caused the wider growth rings, the narrower growth rings have been formed in the years with higher maximum temperatures in August in the isolated coastal site of Scots pine.

Mosaic, block-face microscopy for measuring cell dimensions, cell collapse, and spatial relationships in wood

A conventional stereo light microscope was used to image polished wood surfaces at cellular resolution over size scales of the growth ring or larger. Bandpass filtering and local area contrast enhancement were used to aid automatic image thresholding and binarisation. An estimate for the location and proportion of cell collapse was introduced based on the distance between uncollapsed cell lumens. Additionally, spatial associations between vessels were determined using a Euclidean distance transform. The analysis of pith to bark cores provided sufficient detail to show significant intra and inter-annual trends in Pinus radiata tracheid dimensions (wall thickness, wall area, and radial widths). These trends were consistent with expectations and in agreement with the literature. Measured cell dimensions may be influenced by cell collapse and deformation as a result of drying. The analysis of air, kiln and oven-dried Eucalyptus nitens showed that cell collapse was highly variable but generally more prominent in the outer third of growth rings. There were significant changes in vessel shape across the growth rings and vessel area was significantly reduced by drying. The technique provides an intermediate step between detailed microscopy and macroscopic imaging that allows spatial analysis at the wood cell level.

Validating a biophysical dispersal model with the early life-history traits of common sole (Solea solea L.)

Larval dispersal and juvenile survival are crucial in determining variation in recruitment, stock size and adult distribution of commercially important fish. This study investigates the dispersal of early-life stages of common sole (Solea solea L.) in the southern North Sea, both empirically and through modeling. Age at different life-history events of juvenile flatfish sampled along the coasts of Belgium, the Netherlands and the United Kingdom in 2013, 2014 and 2016, was determined through the counting of daily growth rings in the otoliths. Juveniles captured between August and October were estimated to be on average 140 days old with an average pelagic larval duration of 34 days. The hatching period was estimated between early April and mid-May followed by arrival and settlement in the nurseries between May and mid-June. Growth rates were higher off the Belgian coast than in the other nursery areas, especially in 2013, possibly due to a post-settlement differentiation. Empirical pelagic larval duration and settlement distributions were compared with the Larvae&Co larval dispersal model, which combines local hydrodynamics in the North Sea with sole larval behavior. Yearly predicted and observed settlement matched partially, but the model estimated a longer pelagic phase. The observations fitted even better with the modelled average (1995–2015) distribution curves. Aberrant results for the small juvenile sole sampled along the UK coast in March 2016, led to the hypothesis of a winter disruption in the deposition of daily growth rings, potentially related to starvation and lower food availability. The similarities between measured and modelled distribution curves cross-validated both types of estimations and accredited daily ageing of juveniles as a useful method to calibrate biophysical models and to understand early-life history of fish, both important tools in support of efficient fisheries management strategies.

Fossil wood from the Upper Cretaceous crater sediments of the Salpeterkop volcano, North West Province, South Africa

The Salpeterkop volcano forms part of what has been referred to as the Upper Cretaceous Sutherland Suite of alkaline rocks, an igneous province composed of olivine melilitites, carbonatites, trachytes and ultramafic lamprophyres. Salpeterkop is a remnant of the summit tuff ring structure that surrounds a crater which is almost 1 km in diameter and is filled with epiclastic strata. Five pieces of silicified wood were collected from the crater filled sediments, sectioned and identified as a new species of Cupressinoxylon, C. widdringtonioides. This is the first example of the fossil genus in South Africa. Only one member of the Cupressaceae s.l. occurs in southern Africa today. From the wide and indistinct growth rings in the fossil wood it can be deduced that the local climate was warm and humid with little or no seasonality, in support of global records of a warm Late Cretaceous. The preservation of the crater further signifies the low level of erosion the region has experienced since its emplacement.