Sulfadoxine-pyrimethamine (SP) plus azithromycin (AZ) (SPAZ) has the potential for intermittent preventive treatment of malaria in pregnancy (IPTp), but its use could increase circulation of antibiotic-resistant bacteria associated with severe pediatric infections. We evaluated the effect of monthly SPAZ-IPTp compared to a single course of SP plus chloroquine (SPCQ) on maternal nasopharyngeal carriage and antibiotic susceptibility ofStreptococcus pneumoniae,Haemophilus influenzae, andStaphylococcus aureusat delivery among 854 women participating in a randomized controlled trial in Papua New Guinea. Serotyping was performed, and antibiotic susceptibility was evaluated by disk diffusion and Etest. Potential risk factors for carriage were examined. Nasopharyngeal carriage at delivery ofS. pneumoniae(SPAZ, 7.2% [30/418], versus SPCQ, 19.3% [84/436];P< 0.001) andH. influenzae(2.9% [12/418] versus 6.0% [26/436],P= 0.028), but notS. aureus, was significantly reduced among women who had received SPAZ-IPTp. The number of macrolide-resistant pneumococcal isolates was small but increased in the SPAZ group (13.3% [4/30], versus SPCQ, 2.2% [2/91];P= 0.033). The proportions of isolates with serotypes covered by the 13-valent pneumococcal conjugate vaccine were similar (SPAZ, 10.3% [3/29], versus SPCQ, 17.6% [16/91];P= 0.352). Although macrolide-resistant isolates were rare, they were more commonly detected in women who had received SPAZ-IPTp, despite the significant reduction of maternal carriage ofS. pneumoniaeandH. influenzaeobserved in this group. Future studies on SPAZ-IPTp should evaluate carriage and persistence of macrolide-resistantS. pneumoniaeand other pathogenic bacteria in both mothers and infants and assess the clinical significance of their circulation.