Graph Neural Networks for Prediction of Fuel Ignition Quality

Author(s):  
Artur Schweidtmann ◽  
Jan Rittig ◽  
Andrea König ◽  
Martin Grohe ◽  
Alexander Mitsos ◽  
...  

<div>Prediction of combustion-related properties of (oxygenated) hydrocarbons is an important and challenging task for which quantitative structure-property relationship (QSPR) models are frequently employed. Recently, a machine learning method, graph neural networks (GNNs), has shown promising results for the prediction of structure-property relationships. GNNs utilize a graph representation of molecules, where atoms correspond to nodes and bonds to edges containing information about the molecular structure. More specifically, GNNs learn physico-chemical properties as a function of the molecular graph in a supervised learning setup using a backpropagation algorithm. This end-to-end learning approach eliminates the need for selection of molecular descriptors or structural groups, as it learns optimal fingerprints through graph convolutions and maps the fingerprints to the physico-chemical properties by deep learning. We develop GNN models for predicting three fuel ignition quality indicators, i.e., the derived cetane number (DCN), the research octane number (RON), and the motor octane number (MON), of oxygenated and non-oxygenated hydrocarbons. In light of limited experimental data in the order of hundreds, we propose a combination of multi-task learning, transfer learning, and ensemble learning. The results show competitive performance of the proposed GNN approach compared to state-of-the-art QSPR models making it a promising field for future research. The prediction tool is available via a web front-end at www.avt.rwth-aachen.de/gnn.</div>

2020 ◽  
Author(s):  
Artur Schweidtmann ◽  
Jan Rittig ◽  
Andrea König ◽  
Martin Grohe ◽  
Alexander Mitsos ◽  
...  

<div>Prediction of combustion-related properties of (oxygenated) hydrocarbons is an important and challenging task for which quantitative structure-property relationship (QSPR) models are frequently employed. Recently, a machine learning method, graph neural networks (GNNs), has shown promising results for the prediction of structure-property relationships. GNNs utilize a graph representation of molecules, where atoms correspond to nodes and bonds to edges containing information about the molecular structure. More specifically, GNNs learn physico-chemical properties as a function of the molecular graph in a supervised learning setup using a backpropagation algorithm. This end-to-end learning approach eliminates the need for selection of molecular descriptors or structural groups, as it learns optimal fingerprints through graph convolutions and maps the fingerprints to the physico-chemical properties by deep learning. We develop GNN models for predicting three fuel ignition quality indicators, i.e., the derived cetane number (DCN), the research octane number (RON), and the motor octane number (MON), of oxygenated and non-oxygenated hydrocarbons. In light of limited experimental data in the order of hundreds, we propose a combination of multi-task learning, transfer learning, and ensemble learning. The results show competitive performance of the proposed GNN approach compared to state-of-the-art QSPR models making it a promising field for future research. The prediction tool is available via a web front-end at www.avt.rwth-aachen.de/gnn.</div>


2002 ◽  
Vol 57 (1-2) ◽  
pp. 49-51
Author(s):  
Miranca Fischermann ◽  
Ivan Gutman ◽  
Arne Hoffmann ◽  
Dieter Rautenbach ◽  
Dušica Vidovića ◽  
...  

A variety of molecular-graph-based structure-descriptors were proposed, in particular the Wiener index W. the largest graph eigenvalue λ1, the connectivity index X, the graph energy E and the Hosoya index Z, capable of measuring the branching of the carbon-atom skeleton of organic compounds, and therefore suitable for describing several of their physico-chemical properties. We now determine the structure of the chemical trees (= the graph representation of acyclic saturated hydrocarbons) that are extremal with respect to W , λ1, E, and Z. whereas the analogous problem for X was solved earlier. Among chemical trees with 5. 6, 7, and 3k + 2 vertices, k = 2,3,..., one and the same tree has maximum λ1 and minimum W, E, Z. Among chemical trees with 3k and 3k +1 vertices, k = 3,4...., one tree has minimum 11 and maximum λ1 and another minimum E and Z .


2002 ◽  
Vol 57 (9-10) ◽  
pp. 49-52 ◽  
Author(s):  
Miranca Fischermann ◽  
Ivan Gutmana ◽  
Arne Hoffmann ◽  
Dieter Rautenbach ◽  
Dušica Vidović ◽  
...  

Avariety of molecular-graph-based structure-descriptors were proposed, in particular the Wiener index W, the largest graph eigenvalue λ1, the connectivity index χ, the graph energy E and the Hosoya index Z, capable of measuring the branching of the carbon-atom skeleton of organic compounds, and therefore suitable for describing several of their physico-chemical properties. We now determine the structure of the chemical trees (= the graph representation of acyclic saturated hydrocarbons) that are extremal with respect to W, λ1, E, and Z, whereas the analogous problem for χ was solved earlier. Among chemical trees with 5, 6, 7, and 3k + 2 vertices, k = 2, 3,..., one and the same tree has maximum λ1 and minimum W, E, Z. Among chemical trees with 3k and 3k + 1 vertices, k = 3, 4..., one tree has minimum W and maximum λ1 and another minimum E and Z.


2020 ◽  
Vol 27 (28) ◽  
pp. 4584-4592 ◽  
Author(s):  
Avik Khan ◽  
Baobin Wang ◽  
Yonghao Ni

Regenerative medicine represents an emerging multidisciplinary field that brings together engineering methods and complexity of life sciences into a unified fundamental understanding of structure-property relationship in micro/nano environment to develop the next generation of scaffolds and hydrogels to restore or improve tissue functions. Chitosan has several unique physico-chemical properties that make it a highly desirable polysaccharide for various applications such as, biomedical, food, nutraceutical, agriculture, packaging, coating, etc. However, the utilization of chitosan in regenerative medicine is often limited due to its inadequate mechanical, barrier and thermal properties. Cellulosic nanomaterials (CNs), owing to their exceptional mechanical strength, ease of chemical modification, biocompatibility and favorable interaction with chitosan, represent an attractive candidate for the fabrication of chitosan/ CNs scaffolds and hydrogels. The unique mechanical and biological properties of the chitosan/CNs bio-nanocomposite make them a material of choice for the development of next generation bio-scaffolds and hydrogels for regenerative medicine applications. In this review, we have summarized the preparation method, mechanical properties, morphology, cytotoxicity/ biocompatibility of chitosan/CNs nanocomposites for regenerative medicine applications, which comprises tissue engineering and wound dressing applications.


Symmetry ◽  
2018 ◽  
Vol 10 (8) ◽  
pp. 320 ◽  
Author(s):  
Young Kwun ◽  
Abaid Virk ◽  
Waqas Nazeer ◽  
M. Rehman ◽  
Shin Kang

The application of graph theory in chemical and molecular structure research has far exceeded people’s expectations, and it has recently grown exponentially. In the molecular graph, atoms are represented by vertices and bonds by edges. Topological indices help us to predict many physico-chemical properties of the concerned molecular compound. In this article, we compute Generalized first and multiplicative Zagreb indices, the multiplicative version of the atomic bond connectivity index, and the Generalized multiplicative Geometric Arithmetic index for silicon-carbon Si2C3−I[p,q] and Si2C3−II[p,q] second.


Author(s):  
Young Chel Kwun ◽  
Abaid ur Rehman Virk ◽  
Waqas Nazeer ◽  
Shin Min Kang

The application of graph theory in chemical and molecular structure research far exceeds people's expectations, and it has recently grown exponentially. In the molecular graph, atoms are represented by vertices and bonded by edges. Closed forms of multiplicative degree-based topological indices which are numerical parameters of the structure and determine physico-chemical properties of the concerned molecular compound. In this article, we compute and analyze many multiplicative degree-based topological indices of silicon-carbon Si2C3-I[p,q] and Si2C3-II[p,q].


A new look on the problem of the molecular systems index description is presented. The capabilities of iterated line (edge) graphs in characterization of saturated hydrocarbons properties were investigated. It was demonstrated that single selected molecular (graph-theoretical (topological) or informational) descriptor calculated for the sequence of nested line graphs provides quite reliable progressive set of regression equations. Hence, the problem of descriptor set reduction is solved in the presented approach at list partially. Corresponding program complex (QUASAR) has been implemented with Python 3 program language. As the test example physico-chemical properties of octane isomers have been chosen. Among the properties under investigation there are boiling point, critical temperature, critical pressure, enthalpy of vaporization, enthalpy of formation, surface tension and viscosity. The corresponding rather simple linear regression equations which include one, two or three parameters correspondingly have been obtained. The predictive ability of the equations has been investigated using internal validation tests. The test by leave-one-out (LOO) validation and Y‑scrambling evaluate the obtained equations as adequate. For instance, for the regression model for boiling point the best equation characterizes by determination coefficients R2 = 0.943, with LOO procedure – Q2 = 0.918, while for the Y-scrambling test Q2y-scr<0.3 basically. It is shown that all the abovementioned molecular properties in iterated line graph approach can be effectively described by commonly used topological indices. Namely almost every randomly selected topological index can give adequate equation. Effectiveness is demonstrated on the example of Zagreb group indices. Also essential effectiveness and rather universal applicability of the so-called “forgotten” index (ZM3) was demonstrated.


Author(s):  
Pengyong Li ◽  
Jun Wang ◽  
Ziliang Li ◽  
Yixuan Qiao ◽  
Xianggen Liu ◽  
...  

Self-supervised learning has gradually emerged as a powerful technique for graph representation learning. However, transferable, generalizable, and robust representation learning on graph data still remains a challenge for pre-training graph neural networks. In this paper, we propose a simple and effective self-supervised pre-training strategy, named Pairwise Half-graph Discrimination (PHD), that explicitly pre-trains a graph neural network at graph-level. PHD is designed as a simple binary classification task to discriminate whether two half-graphs come from the same source. Experiments demonstrate that the PHD is an effective pre-training strategy that offers comparable or superior performance on 13 graph classification tasks compared with state-of-the-art strategies, and achieves notable improvements when combined with node-level strategies. Moreover, the visualization of learned representation revealed that PHD strategy indeed empowers the model to learn graph-level knowledge like the molecular scaffold. These results have established PHD as a powerful and effective self-supervised learning strategy in graph-level representation learning.


2018 ◽  
Vol 7 (2) ◽  
pp. 123-129 ◽  
Author(s):  
Adnan Aslam ◽  
Muhammad Kamran Jamil ◽  
Wei Gao ◽  
Waqas Nazeer

AbstractA numerical number associated to the molecular graphGthat describes its molecular topology is called topological index. In the study ofQSARandQSPR, topological indices such as atom-bond connectivity index, Randić connectivity index, geometric index, etc. help to predict many physico-chemical properties of the chemical compound under study. Dendrimers are macromolecules and have many applications in chemistry, especially in self-assembly procedures and host-guest reactions. The aim of this report is to compute degree-based topological indices, namely the fourth atom-bond connectivity index and fifth geometric arithmetic index of poly propyl ether imine, zinc porphyrin, and porphyrin dendrimers.


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