Analysis on Restriction Fragment Polymorphism and Determination of Genetic Diversity of Mitochondrial DNA form SEPIA Species

1997 ◽  
Vol 48 (2) ◽  
pp. 103 ◽  
Author(s):  
Donald J. Colgan ◽  
John R. Paxton

Protein electrophoresis and analysis of restriction fragment polymorphism in mitochondrial DNA (mtDNA) provided information on population/stock structure of Rexea solandri. Two distinct Australian stocks are evident, with one (AAT-2) of 36 enzymatic loci and all 11 mtDNA digestion profiles showing highly significant differences between eastern and southern/western Australian specimens. The split is at the western end of Bass Strait, with limited mixing off western Tasmania. No external characters were found that would allow determination of the provenance of an individual fish. Stock distinction between eastern Australian and New Zealand fish is less clear; some differences, usually statistically non-significant, in genetic frequencies were found and some rare allozymic or restriction fragment variants were found in one or other but not both regions. Estimates of gene flow suggest that only tens of individuals per generation migrate between the regions. In an experiment on tissue deterioration, after six days of exposure out of doors, significant amounts of intact mtDNA were present in all tissues, and all fragments of the HINF 1 phenotype were clearly scorable. Of 19 enzymes tested, only three showed reduced activity on Day 6. Gonad and muscle tissues were more resistant to degradation than was liver tissue.


2007 ◽  
Vol 85 (5) ◽  
pp. 484-492 ◽  
Author(s):  
Jie Qiu ◽  
Yong-Bi Fu ◽  
Yuguang Bai ◽  
John F. Wilmshurst

Plains rough fescue ( Festuca hallii (Vasey) Piper) is a dominant native grass species in the Fescue Prairie region of North America that has undergone dramatic range reduction in the past century. Little is known about the genetic diversity of this species. The amplified restriction fragment polymorphism (AFLP) technique was applied to assess the comparative genetic diversity of six plains rough fescue populations in Manitoba and Saskatchewan and their corresponding seed collections. Three AFLP primer pairs were employed to screen 529 samples, representing about 30 samples each of reproductive tiller, vegetative tiller, and seed collected from each population. A total of 330 polymorphic AFLP bands were scored for each sample; their occurrence frequencies ranged from 0.01 to 0.99 and averaged around 0.47. Analysis of molecular variance revealed more than 90% of the total AFLP variation resided within natural populations (reproductive and vegetative tillers) and within seed samples. Four populations sampled from protected areas appear to have relatively lower within-population variation than two unprotected populations. Only 0.2% AFLP difference was revealed among the three tissue types examined. The tiller samples revealed slightly larger among-population variation than the seed samples and captured substantial associations of AFLP variation with population geographic distances. These findings are important for germplasm sampling for ex situ conservation, are useful for germplasm development for pasture seeding, and should facilitate the management of fragmented fescue populations.


BIO-PROTOCOL ◽  
2015 ◽  
Vol 5 (2) ◽  
Author(s):  
Michel Perron ◽  
Joy Feng

Environments ◽  
2021 ◽  
Vol 8 (4) ◽  
pp. 25
Author(s):  
Caterina M. Antognazza ◽  
Isabella Vanetti ◽  
Vanessa De Santis ◽  
Adriano Bellani ◽  
Monica Di Francesco ◽  
...  

The reintroduction of the extinct beluga sturgeon (Huso huso L.), an anadromous species with economic and traditional relevance, is a priority in next conservation strategies in Northern Italy. The EU-LIFE NATURA project aims to reintroduce the beluga sturgeon in the Po River basin through a captive breeding program. Critical requirements for the success of the program are river connectivity and knowledge of genetic diversity of the selected broodstocks to ensure self-sustainability of reintroduced populations. Here, the four broodstocks used for the reintroduction of beluga sturgeon have been genetically screened, genotyping 13 loci and sequencing mitochondrial DNA cytochrome b (Cyt b) gene and the entire mitochondrial DNA control region (D-Loop). The four broodstocks showed a medium-high level of nuclear genetic variability and the presence of two sub-populations, evidencing a total level of inbreeding coefficients able to sustain the good potential as future breeders. Mitochondrial analyses showed a genetic variability comparable to wild populations, further strengthening the positive potential of the investigated broodstock. Therefore, this study, showed how the degree of genetic diversity found within the four broodstocks used for H. huso reintroduction in the Po River basin could be suitable to ensure the success of the program, avoiding the inbreeding depression associated with founder effect and captive breeding.


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