scholarly journals Nucleosome Assembly and Disassembly in vitro Are Governed by Chemical Kinetic Principles

2021 ◽  
Vol 9 ◽  
Author(s):  
Hongyu Zhao ◽  
Mingxin Guo ◽  
Fenghui Zhang ◽  
Xueqin Shao ◽  
Guoqing Liu ◽  
...  
Keyword(s):  
Kinetic Model ◽  
Rate Constant ◽  
Dna Sequences ◽  
Reaction Rate ◽  
Chemical Kinetic ◽  
Reaction Rate Constant ◽  
Nucleosome Assembly ◽  
Chemical Kinetic Model ◽  
Nucleosome Disassembly

As the elementary unit of eukaryotic chromatin, nucleosomes in vivo are highly dynamic in many biological processes, such as DNA replication, repair, recombination, or transcription, to allow the necessary factors to gain access to their substrate. The dynamic mechanism of nucleosome assembly and disassembly has not been well described thus far. We proposed a chemical kinetic model of nucleosome assembly and disassembly in vitro. In the model, the efficiency of nucleosome assembly was positively correlated with the total concentration of histone octamer, reaction rate constant and reaction time. All the corollaries of the model were well verified for the Widom 601 sequence and the six artificially synthesized DNA sequences, named CS1–CS6, by using the salt dialysis method in vitro. The reaction rate constant in the model may be used as a new parameter to evaluate the nucleosome reconstitution ability with DNAs. Nucleosome disassembly experiments for the Widom 601 sequence detected by Förster resonance energy transfer (FRET) and fluorescence thermal shift (FTS) assays demonstrated that nucleosome disassembly is the inverse process of assembly and can be described as three distinct stages: opening phase of the (H2A–H2B) dimer/(H3–H4)2 tetramer interface, release phase of the H2A–H2B dimers from (H3–H4)2 tetramer/DNA and removal phase of the (H3–H4)2 tetramer from DNA. Our kinetic model of nucleosome assembly and disassembly allows to confirm that nucleosome assembly and disassembly in vitro are governed by chemical kinetic principles.

scholarly journals The chemistry of cool circumstellar envelopes

1987 ◽  
Vol 122 ◽  
pp. 551-552
Author(s):  
L.A.M. Nejad ◽  
T. J. Millar
Keyword(s):  
Kinetic Model ◽  
Chemical Kinetic ◽  
Time Dependent ◽  
Circumstellar Envelopes ◽  
Chemical Kinetic Model ◽  
Ion Molecule Reactions ◽  
Cool Stars

We have developed a time-dependent chemical kinetic model to describe the chemistry in the circumstellar envelopes of cool stars, with particular reference to IRC + 10216. Our detailed calculations show that ion-molecule reactions are important in the formation of many of the species observed in IRC + 10216.

scholarly journals Determination of exothermic batch reactor specific model parameters

2019 ◽  
Vol 292 ◽  
pp. 01063
Author(s):  
Lubomír Macků
Keyword(s):  
Rate Constant ◽  
Reaction Rate ◽  
Batch Reactor ◽  
Specific Model ◽  
Reaction Rate Constant ◽  
Order Reaction ◽  
First Order Reaction ◽  
Model Parameters ◽  
Reactor Model ◽  
First Order

An alternative method of determining exothermic reactor model parameters which include first order reaction rate constant is described in this paper. The method is based on known in reactor temperature development and is suitable for processes with changing quality of input substances. This method allows us to evaluate the reaction substances composition change and is also capable of the reaction rate constant (parameters of the Arrhenius equation) determination. Method can be used in exothermic batch or semi- batch reactors running processes based on the first order reaction. An example of such process is given here and the problem is shown on its mathematical model with the help of simulations.

Performance of Photocatalytic Microfiltration with Hollow Fiber Membrane

2007 ◽  
Vol 544-545 ◽  
pp. 95-98 ◽  
Author(s):  
Jong Tae Jung ◽  
Jong Oh Kim ◽  
Won Youl Choi
Keyword(s):  
Heavy Metals ◽  
Humic Acid ◽  
Rate Constant ◽  
Hollow Fiber ◽  
Reaction Rate ◽  
Hollow Fiber Membrane ◽  
Membrane Surface ◽  
Reaction Rate Constant ◽  
Operational Parameters ◽  
Tio2 Particles

The purpose of this study is to investigate the effect of the operational parameters of the UV intensity and TiO2 dosage for the removal of humic acid and heavy metals. It also evaluated the applicability of hollow fiber microfiltration for the separation of TiO2 particles in photocatalytic microfiltration systems. TiO2 powder P-25 Degussa and hollow fiber microfiltration with a 0.4 μm nominal pore size were used for experiments. Under the conditions of pH 7 and a TiO2 dosage 0.3 g/L, the reaction rate constant (k) for humic acid and heavy metals increased with an increase of the UV intensity in each process. For the UV/TiO2/MF process, the reaction rate constant (k) for humic acid and Cu, with the exception of Cr in a low range of UV intensity, was higher compared to that of UV/TiO2 due to the adsorption of the membrane surface. The reaction rate constant (k) increased as the TiO2 dosage increased in the range of 0.1~0.3 g/L. However it decreased for a concentration over 0.3 g/L of TiO2. For the UV/TiO2/MF process, TiO2 particles could be effectively separated from treated water via membrane rejection. The average removal efficiency for humic acid and heavy metals during the operational time was over 90 %. Therefore, photocatalysis with a membrane is believed to be a viable process for humic acid and heavy metals removal.

Reaction rate constant of SO3+ NH3in the gas phase

1990 ◽  
Vol 95 (D9) ◽  
pp. 13981 ◽  
Author(s):  
Gaunlin Shen ◽  
Masako Suto ◽  
L. C. Lee
Keyword(s):  
Gas Phase ◽  
Rate Constant ◽  
Reaction Rate ◽  
Reaction Rate Constant

Prediction of Chemical Reaction Yield in a Microreactor and Development of a Pilot Plant Using the Numbering-Up of Microreactors

2010 ◽  
Author(s):  
Shigenori Togashi ◽  
Yukako Asano ◽  
Yoshishige Endo
Keyword(s):  
Monte Carlo Simulation ◽  
Monte Carlo ◽  
Chemical Reaction ◽  
Rate Constant ◽  
Pilot Plant ◽  
Reaction Rate ◽  
Main Product ◽  
Reaction Rate Constant ◽  
Reaction Yield ◽  
Production Scale

The chemical reaction yield was predicted by using Monte Carlo simulation. The targeted chemical reaction of a performance evaluation using the microreactor is the consecutive reaction. The main product P1 is formed in the first stage with the reaction rate constant k1. Moreover, the byproduct P2 is formed in the second stage with the reaction rate constant k2. It was found that the yield of main product P1 was improved by using a microreactor when the ratio of the reaction rate constants became k1/k2 >1. To evaluate the Monte Carlo simulation result, the yields of the main products obtained in three consecutive reactions. It was found that the yield of the main product in cased of k1/k2 >1 increased when the microreactor was uesd. Next, a pilot plant involving the numbering-up of 20 microreactors was developed. The 20 microreactor units were stacked in four sets, each containing five microreactor units arranged. The maximum flow rate when 20 microreactors were used was 1 × 104 mm3/s, which corresponds to 72 t/year. Evaluation of the chemical performance of the pilot plant was conducted using a nitration reaction. The pilot plant was found to capable of increasing the production scale without decreasing the yield of the products.

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