scholarly journals Assessing Habitat Suitability Models for the Deep Sea: Is Our Ability to Predict the Distributions of Seafloor Fauna Improving?

2021 ◽  
Vol 8 ◽  
Author(s):  
David A. Bowden ◽  
Owen F. Anderson ◽  
Ashley A. Rowden ◽  
Fabrice Stephenson ◽  
Malcolm R. Clark

Methods that predict the distributions of species and habitats by developing statistical relationships between observed occurrences and environmental gradients have become common tools in environmental research, resource management, and conservation. The uptake of model predictions in practical applications remains limited, however, because validation against independent sample data is rarely practical, especially at larger spatial scales and in poorly sampled environments. Here, we use a quantitative dataset of benthic invertebrate faunal distributions from seabed photographic surveys of an important fisheries area in New Zealand as independent data against which to assess the usefulness of 47 habitat suitability models from eight published studies in the region. When assessed against the independent data, model performance was lower than in published cross-validation values, a trend of increasing performance over time seen in published metrics was not supported, and while 74% of the models were potentially useful for predicting presence or absence, correlations with prevalence and density were weak. We investigate the reasons underlying these results, using recently proposed standards to identify areas in which improvements can best be made. We conclude that commonly used cross-validation methods can yield inflated values of prediction success even when spatial structure in the input data is allowed for, and that the main impediments to prediction success are likely to include unquantified uncertainty in available predictor variables, lack of some ecologically important variables, lack of confirmed absence data for most taxa, and modeling at coarse taxonomic resolution.

2018 ◽  
Author(s):  
Edward J Gregr ◽  
Daniel M. Palacios ◽  
Allison Thompson ◽  
Kai M. A. Chan

Understanding how species are distributed in the environment is increasingly important for natural resource management, particularly for keystone and habitat forming species, and those of conservation concern. Habitat suitability models are fundamental to developing this understanding; however their use in management continues to be limited due to often-vague model objectives and inadequate evaluation methods. Along the Northeast Pacific coast, canopy kelps (Macrocystis pyrifera and Nereocystis luetkeana) provide biogenic habitat and considerable primary production to nearshore ecosystems. We investigated the distribution of these species by examining a series of increasingly complex habitat suitability models ranging from process-based models based on species' ecology to complex Generalised Additive Models applied to purpose-collected survey data. Seeking limits on model complexity, we explored the relationship between model complexity and forecast skill, measured using both cross-validation and independent data evaluation. Our analysis confirmed the importance of predictors used in models of coastal kelp distributions developed elsewhere (i.e., depth, bottom type, bottom slope, and exposure); it also identified additional important factors including salinity, and interactions between exposure and salinity, and slope and tidal energy. Comparative results showed that cross-validation can lead to over-fitting, while independent data evaluation clearly identified the appropriate model complexity for generating habitat forecasts. Our results also illustrate that, depending on the evaluation data, predictions from simpler models can out-perform those from more complex models. Collectively, the insights from evaluating multiple models with multiple data sets contribute to the holistic assessment of model forecast skill. The continued development of methods and metrics for evaluating model forecasts with independent data, and the explicit consideration of model objectives and assumptions, promise to increase the utility of model forecasts to decision makers.


2006 ◽  
Vol 63 (9) ◽  
pp. 1590-1603 ◽  
Author(s):  
Liz Morris ◽  
David Ball

Abstract In this study we used catch and effort data from a commercial fishery to generate habitat suitability models for Port Phillip Bay, Victoria, Australia. Species modelled were King George whiting (Sillaginodes punctata), greenback flounder (Rhombosolea tapirina), Australian salmon (Arripis trutta and A. truttaceus), and snapper (Pagrus auratus). Locations of commercial catches were reported through a grid system of fishing blocks. Spatial analyses in a Geographic Information System (GIS) were applied to describe each fishing block by its habitat area. A multivariate approach was adopted to group each fishing block by its dominant habitats. Standardized catch per unit effort values were overlaid on these groups to identify those that returned high or low catches for each species. A simple set of rules was then devised to predict the habitat suitability for each habitat combination in a fishing block. The spatial distribution of these habitats was presented in a GIS. These habitat suitability models were consistent with existing anecdotal information and expert opinion. While the models require testing, we have shown that in the absence of adequate fishery-independent data, commercial catch and effort data can be used to produce habitat suitability models at a bay-wide scale.


2021 ◽  
Vol 36 (2) ◽  
pp. 455-474
Author(s):  
Eric Ash ◽  
David W. Macdonald ◽  
Samuel A. Cushman ◽  
Adisorn Noochdumrong ◽  
Tim Redford ◽  
...  

Abstract Context Species habitat suitability models rarely incorporate multiple spatial scales or functional shapes of a species’ response to covariates. Optimizing models for these factors may produce more robust, reliable, and informative habitat suitability models, which can be beneficial for the conservation of rare and endangered species, such as tigers (Panthera tigris). Objectives We provide the first formal assessment of the relative impacts of scale-optimization and shape-optimization on model performance and habitat suitability predictions. We explored how optimization influences conclusions regarding habitat selection and mapped probability of occurrence. Methods We collated environmental variables expected to affect tiger occurrence, calculating focal statistics and landscape metrics at spatial scales ranging from 250 m to 16 km. We then constructed a set of presence–absence generalized linear models including: (1) single-scale optimized models (SSO); (2) a multi-scale optimized model (MSO); (3) single-scale shape-optimized models (SSSO) and (4) a multi-scale- and shape-optimized model (MSSO). We compared performance and resulting prediction maps for top performing models. Results The SSO (16 km), SSSO (16 km), MSO, and MSSO models performed equally well (AUC > 0.9). However, these differed substantially in prediction and mapped habitat suitability, leading to different ecological understanding and potentially divergent conservation recommendations. Habitat selection was highly scale-dependent and the strongest relationships with environmental variables were at the broadest scales analysed. Modelling approach had a substantial influence in variable importance among top models. Conclusions Our results suggest that optimization of the scale of resource selection is crucial in modelling tiger habitat selection. However, in this analysis, shape-optimization did not improve model performance.


2003 ◽  
Author(s):  
Michael A. Larson ◽  
William D. Dijak ◽  
Frank R. III Thompson ◽  
Joshua J. Millspaugh

2021 ◽  
Vol 13 (14) ◽  
pp. 2838
Author(s):  
Yaping Mo ◽  
Yongming Xu ◽  
Huijuan Chen ◽  
Shanyou Zhu

Land surface temperature (LST) is an important environmental parameter in climate change, urban heat islands, drought, public health, and other fields. Thermal infrared (TIR) remote sensing is the main method used to obtain LST information over large spatial scales. However, cloud cover results in many data gaps in remotely sensed LST datasets, greatly limiting their practical applications. Many studies have sought to fill these data gaps and reconstruct cloud-free LST datasets over the last few decades. This paper reviews the progress of LST reconstruction research. A bibliometric analysis is conducted to provide a brief overview of the papers published in this field. The existing reconstruction algorithms can be grouped into five categories: spatial gap-filling methods, temporal gap-filling methods, spatiotemporal gap-filling methods, multi-source fusion-based gap-filling methods, and surface energy balance-based gap-filling methods. The principles, advantages, and limitations of these methods are described and discussed. The applications of these methods are also outlined. In addition, the validation of filled LST values’ cloudy pixels is an important concern in LST reconstruction. The different validation methods applied for reconstructed LST datasets are also reviewed herein. Finally, prospects for future developments in LST reconstruction are provided.


2021 ◽  
Author(s):  
Francesco Cerasoli ◽  
Aurélien Besnard ◽  
Marc‐Antoine Marchand ◽  
Paola D'Alessandro ◽  
Mattia Iannella ◽  
...  

Caldasia ◽  
2021 ◽  
Vol 43 (2) ◽  
pp. 412-415
Author(s):  
José Rogelio Prisciliano-Vázquez ◽  
Elena Galindo-Aguilar ◽  
Mario César Lavariega ◽  
María Delfina Luna-Krauletz ◽  
Mayra Karen Espinoza-Ramírez ◽  
...  

The jaguar (Panthera onca) has been experiencing a considerable range reduction due to habitat loss and poaching. Habitat suitability models have identified areas likely to maintain populations, but field data are scarce for several of them. Between 2012 and 2017, we investigated the jaguar occurrence in 35 communities of the Chinantla region, southern Mexico, throughout camera trapping in non-systematic surveys. We recorded 124 independent events of 23 jaguars in thirteen communities. Jaguars recorded over the years, couples and pregnant females are highlighted in the Chinantla region as a stronghold to the jaguar.


2019 ◽  
Author(s):  
Daria Koscinski ◽  
Paul Handford ◽  
Pablo L. Tubaro ◽  
Peiwen Li ◽  
Stephen C. Lougheed

ABSTRACTThe tropical and subtropical Andes have among the highest levels of biodiversity in the world. Understanding the forces that underlie speciation and diversification in the Andes is a major focus of research. Here we tested two hypotheses of species origins in the Andes: 1. Vicariance mediated by orogenesis or shifting habitat distribution. 2. Parapatric diversification along elevational environmental gradients. We also sought insights on the factors that impacted the phylogeography of co-distributed taxa, and the influences of divergent species ecology on population genetic structure. We used phylogeographic and coalescent analyses of nuclear and mitochondrial DNA sequence data to compare genetic diversity and evolutionary history of two frog species: Pleurodema borellii (Family: Leiuperidae, 130 individuals; 20 sites), and Hypsiboas riojanus (Family: Hyllidae, 258 individuals; 23 sites) across their shared range in northwestern Argentina. The two showed concordant phylogeographic structuring, and our analyses support the vicariance model over the elevational gradient model. However, Pleurodema borellii exhibited markedly deeper temporal divergence (≥4 Ma) than H. riojanus (1-2 Ma). The three main mtDNA lineages of P. borellii were nearly allopatric and diverged between 4-10 Ma. At similar spatial scales, differentiation was less in the putatively more habitat-specialized H. riojanus than in the more generalist P. borellii. Similar allopatric distributions of major lineages for both species implies common causes of historical range fragmentation and vicariance. However, different divergence times among clades presumably reflect different demographic histories, permeability of different historical barriers at different times, and/or difference in life history attributes and sensitivities to historical environmental change. Our research enriches our understanding of the phylogeography of the Andes in northwestern Argentina.


<em>Abstract.—</em> A need exists to scientifically determine optimal fish habitats to support decision making for management of essential fish habitat. Scientists have been collaborating to conduct habitat suitability index (HSI) modeling to spatially delineate fish habitats for estuarine fish and invertebrate species in Tampa Bay and Charlotte Harbor, Florida. Results from HSI modeling of juvenile spotted seatrout <em>Cynoscion nebulosus </em> in Charlotte Harbor are presented. Data obtained from 1989–1997 by fisheries-independent monitoring in the two estuaries were used along with environmental data from other sources. Standardized catch-per-unit-effort (catch rates) were calculated across gear types using fisheries-monitoring data from Charlotte Harbor and Tampa Bay. Suitability index functions were determined using three methods: (1) frequency of occurrence, (2) mean catch rates within ranges, and (3) smooth-mean catch rates determined by polynomial regression. Mean catch rates were estimated within biologically relevant ranges and, where sufficient data were available, for finer intervals across environmental gradients. Suitability index functions across environmental gradients were then derived by scaling catch rates. Gridded habitat layers for temperature, salinity, depth, and bottom type in Charlotte Harbor were also created using a geographic information system. Habitat suitability index modeling was conducted using the U.S. Fish and Wildlife Service geometric mean method linked to the ArcView Spatial Analyst module. The model integrated suitability indices associated with the habitat layers for Charlotte Harbor to create a map of the predicted distribution for juvenile spotted seatrout during the fall season. Suitability indices developed for Tampa Bay were used with Charlotte Harbor habitat layers to test transfer of the indices to another estuary. Predicted HSI maps depicted low to optimum habitat suitability zones in Charlotte Harbor. Model performance was evaluated by statistically comparing the relative ranking of mean catch rates with mean suitability indices for corresponding zones. Suitability indices obtained using polynomial regression methods yielded morereliable HSI maps for juvenile spotted seatrout than those derived using mean catch rates within biologically relevant ranges. The observed map, derived using smooth-mean suitability indices transferred from Tampa Bay, was not significantly different (Chi-square goodness-of-fit test) from the expected map derived using smooth-mean indices from Charlotte Harbor. Our modeling efforts using transferred indices indicate that it is possible to predict the geographic distributions of fish species by life stage in estuaries lacking fisheries monitoring.


2020 ◽  
Vol 117 (30) ◽  
pp. 17482-17490 ◽  
Author(s):  
Mark C. Urban ◽  
Sharon Y. Strauss ◽  
Fanie Pelletier ◽  
Eric P. Palkovacs ◽  
Mathew A. Leibold ◽  
...  

Historically, many biologists assumed that evolution and ecology acted independently because evolution occurred over distances too great to influence most ecological patterns. Today, evidence indicates that evolution can operate over a range of spatial scales, including fine spatial scales. Thus, evolutionary divergence across space might frequently interact with the mechanisms that also determine spatial ecological patterns. Here, we synthesize insights from 500 eco-evolutionary studies and develop a predictive framework that seeks to understand whether and when evolution amplifies, dampens, or creates ecological patterns. We demonstrate that local adaptation can alter everything from spatial variation in population abundances to ecosystem properties. We uncover 14 mechanisms that can mediate the outcome of evolution on spatial ecological patterns. Sometimes, evolution amplifies environmental variation, especially when selection enhances resource uptake or patch selection. The local evolution of foundation or keystone species can create ecological patterns where none existed originally. However, most often, we find that evolution dampens existing environmental gradients, because local adaptation evens out fitness across environments and thus counteracts the variation in associated ecological patterns. Consequently, evolution generally smooths out the underlying heterogeneity in nature, making the world appear less ragged than it would be in the absence of evolution. We end by highlighting the future research needed to inform a fully integrated and predictive biology that accounts for eco-evolutionary interactions in both space and time.


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