scholarly journals Why less complexity produces better forecasts: An independent data evaluation of kelp habitat models

2018 ◽  
Author(s):  
Edward J Gregr ◽  
Daniel M. Palacios ◽  
Allison Thompson ◽  
Kai M. A. Chan

Understanding how species are distributed in the environment is increasingly important for natural resource management, particularly for keystone and habitat forming species, and those of conservation concern. Habitat suitability models are fundamental to developing this understanding; however their use in management continues to be limited due to often-vague model objectives and inadequate evaluation methods. Along the Northeast Pacific coast, canopy kelps (Macrocystis pyrifera and Nereocystis luetkeana) provide biogenic habitat and considerable primary production to nearshore ecosystems. We investigated the distribution of these species by examining a series of increasingly complex habitat suitability models ranging from process-based models based on species' ecology to complex Generalised Additive Models applied to purpose-collected survey data. Seeking limits on model complexity, we explored the relationship between model complexity and forecast skill, measured using both cross-validation and independent data evaluation. Our analysis confirmed the importance of predictors used in models of coastal kelp distributions developed elsewhere (i.e., depth, bottom type, bottom slope, and exposure); it also identified additional important factors including salinity, and interactions between exposure and salinity, and slope and tidal energy. Comparative results showed that cross-validation can lead to over-fitting, while independent data evaluation clearly identified the appropriate model complexity for generating habitat forecasts. Our results also illustrate that, depending on the evaluation data, predictions from simpler models can out-perform those from more complex models. Collectively, the insights from evaluating multiple models with multiple data sets contribute to the holistic assessment of model forecast skill. The continued development of methods and metrics for evaluating model forecasts with independent data, and the explicit consideration of model objectives and assumptions, promise to increase the utility of model forecasts to decision makers.

2021 ◽  
Vol 8 ◽  
Author(s):  
David A. Bowden ◽  
Owen F. Anderson ◽  
Ashley A. Rowden ◽  
Fabrice Stephenson ◽  
Malcolm R. Clark

Methods that predict the distributions of species and habitats by developing statistical relationships between observed occurrences and environmental gradients have become common tools in environmental research, resource management, and conservation. The uptake of model predictions in practical applications remains limited, however, because validation against independent sample data is rarely practical, especially at larger spatial scales and in poorly sampled environments. Here, we use a quantitative dataset of benthic invertebrate faunal distributions from seabed photographic surveys of an important fisheries area in New Zealand as independent data against which to assess the usefulness of 47 habitat suitability models from eight published studies in the region. When assessed against the independent data, model performance was lower than in published cross-validation values, a trend of increasing performance over time seen in published metrics was not supported, and while 74% of the models were potentially useful for predicting presence or absence, correlations with prevalence and density were weak. We investigate the reasons underlying these results, using recently proposed standards to identify areas in which improvements can best be made. We conclude that commonly used cross-validation methods can yield inflated values of prediction success even when spatial structure in the input data is allowed for, and that the main impediments to prediction success are likely to include unquantified uncertainty in available predictor variables, lack of some ecologically important variables, lack of confirmed absence data for most taxa, and modeling at coarse taxonomic resolution.


2006 ◽  
Vol 63 (9) ◽  
pp. 1590-1603 ◽  
Author(s):  
Liz Morris ◽  
David Ball

Abstract In this study we used catch and effort data from a commercial fishery to generate habitat suitability models for Port Phillip Bay, Victoria, Australia. Species modelled were King George whiting (Sillaginodes punctata), greenback flounder (Rhombosolea tapirina), Australian salmon (Arripis trutta and A. truttaceus), and snapper (Pagrus auratus). Locations of commercial catches were reported through a grid system of fishing blocks. Spatial analyses in a Geographic Information System (GIS) were applied to describe each fishing block by its habitat area. A multivariate approach was adopted to group each fishing block by its dominant habitats. Standardized catch per unit effort values were overlaid on these groups to identify those that returned high or low catches for each species. A simple set of rules was then devised to predict the habitat suitability for each habitat combination in a fishing block. The spatial distribution of these habitats was presented in a GIS. These habitat suitability models were consistent with existing anecdotal information and expert opinion. While the models require testing, we have shown that in the absence of adequate fishery-independent data, commercial catch and effort data can be used to produce habitat suitability models at a bay-wide scale.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Masoud Yousefi ◽  
Anooshe Kafash ◽  
Ali Khani ◽  
Nima Nabati

Abstract Snakebite envenoming is an important public health problem in Iran, despite its risk not being quantified. This study aims to use venomous snakes’ habitat suitability as an indicator of snakebite risk, to identify high-priority areas for snakebite management across the country. Thus, an ensemble approach using five distribution modelling methods: Generalized Boosted Models, Generalized Additive Models, Maximum Entropy Modelling, Generalized Linear Models, and Random Forest was applied to produce a spatial snakebite risk model for Iran. To achieve this, four venomous snakes’ habitat suitability (Macrovipera lebetinus, Echis carinatus, Pseudocerastes persicus and Naja oxiana) were modelled and then multiplied. These medically important snakes are responsible for the most snakebite incidents in Iran. Multiplying habitat suitability models of the four snakes showed that the northeast of Iran (west of Khorasan-e-Razavi province) has the highest snakebite risk in the country. In addition, villages that were at risk of envenoming from the four snakes were identified. Results revealed that 51,112 villages are at risk of envenoming from M. lebetinus, 30,339 from E. carinatus, 51,657 from P. persicus and 12,124 from N. oxiana. Precipitation seasonality was identified as the most important variable influencing distribution of the P. persicus, E. carinatus and M. lebetinus in Iran. Precipitation of the driest quarter was the most important predictor of suitable habitats of the N. oxiana. Since climatic variables play an important role in shaping the distribution of the four venomous snakes in Iran, thus their distribution may alter with changing climate. This paper demonstrates application of species distribution modelling in public health research and identified potential snakebite risk areas in Iran by using venomous snakes’ habitat suitability models as an indicating factor. Results of this study can be used in snakebite and human–snake conflict management in Iran. We recommend increasing public awareness of snakebite envenoming and education of local people in areas which identified with the highest snakebite risk.


2003 ◽  
Author(s):  
Michael A. Larson ◽  
William D. Dijak ◽  
Frank R. III Thompson ◽  
Joshua J. Millspaugh

2021 ◽  
Author(s):  
Francesco Cerasoli ◽  
Aurélien Besnard ◽  
Marc‐Antoine Marchand ◽  
Paola D'Alessandro ◽  
Mattia Iannella ◽  
...  

2016 ◽  
Vol 76 (3) ◽  
pp. 718-725
Author(s):  
T. C. L. Silveira ◽  
A. M. S. Gama ◽  
T. P. Alves ◽  
N. F. Fontoura

Abstract This study aimed to model the habitat suitability for an invasive clam Corbicula fluminea in a coastal shallow lagoon in the southern Neotropical region (–30.22, –50.55). The lagoon (19km2, maximum deep 2.5m) was sampled with an Ekman dredge in an orthogonal matrix comprising 84 points. At each sampling point, were obtained environmental descriptors as depth, organic matter content (OMC), average granulometry (Avgran), and the percentage of sand (Pcsand). Prediction performance of Generalized Linear Models (GLM), Generalized Additive Models (GAM) and Boosted Regression Tree (BRT) were compared. Also, niche overlapping with other native clam species (Castalia martensi, Neocorbicula limosa and Anodontites trapesialis) was examined. A BRT model with 1400 trees was selected as the best model, with cross-validated correlation of 0.82. The relative contributions of predictors were Pcsand-42.6%, OMC-35.8%, Avgran-10.9% and Depth-10.8%. Were identified that C. fluminea occur mainly in sandy sediments with few organic matter, in shallow areas nor by the shore. The PCA showed a wide niche overlap with the native clam species C. martensi, N. limosa and A. trapesialis.


Caldasia ◽  
2021 ◽  
Vol 43 (2) ◽  
pp. 412-415
Author(s):  
José Rogelio Prisciliano-Vázquez ◽  
Elena Galindo-Aguilar ◽  
Mario César Lavariega ◽  
María Delfina Luna-Krauletz ◽  
Mayra Karen Espinoza-Ramírez ◽  
...  

The jaguar (Panthera onca) has been experiencing a considerable range reduction due to habitat loss and poaching. Habitat suitability models have identified areas likely to maintain populations, but field data are scarce for several of them. Between 2012 and 2017, we investigated the jaguar occurrence in 35 communities of the Chinantla region, southern Mexico, throughout camera trapping in non-systematic surveys. We recorded 124 independent events of 23 jaguars in thirteen communities. Jaguars recorded over the years, couples and pregnant females are highlighted in the Chinantla region as a stronghold to the jaguar.


2017 ◽  
Vol 56 (6) ◽  
pp. 1707-1729 ◽  
Author(s):  
Marlis Hofer ◽  
Johanna Nemec ◽  
Nicolas J. Cullen ◽  
Markus Weber

AbstractThis study explores the potential of different predictor strategies for improving the performance of regression-based downscaling approaches. The investigated local-scale target variables are precipitation, air temperature, wind speed, relative humidity, and global radiation, all at a daily time scale. Observations of these target variables are assessed from three sites in close proximity to mountain glaciers: 1) the Vernagtbach station in the European Alps, 2) the Artesonraju measuring site in the tropical South American Andes, and 3) the Mount Brewster measuring site in the Southern Alps of New Zealand. The large-scale dataset being evaluated is the ERA-Interim dataset. In the downscaling procedure, particular emphasis is put on developing efficient yet not overfit models from the limited information in the temporally short (typically a few years) observational records of the high mountain sites. For direct (univariate) predictors, optimum scale analysis turns out to be a powerful means to improve the forecast skill without the need to increase the downscaling model complexity. Yet the traditional (multivariate) predictor sets show generally higher skill than the direct predictors for all variables, sites, and days of the year. Only in the case of large sampling uncertainty (identified here to particularly affect observed precipitation) is the use of univariate predictor options justified. Overall, the authors find a range in forecast skill among the different predictor options applied in the literature up to 0.5 (where 0 indicates no skill, and 1 represents perfect skill). This highlights that a sophisticated predictor selection (as presented in this study) is essential in the development of realistic, local-scale scenarios by means of downscaling.


Sign in / Sign up

Export Citation Format

Share Document