scholarly journals T4SE-XGB: Interpretable Sequence-Based Prediction of Type IV Secreted Effectors Using eXtreme Gradient Boosting Algorithm

2020 ◽  
Vol 11 ◽  
Author(s):  
Tianhang Chen ◽  
Xiangeng Wang ◽  
Yanyi Chu ◽  
Yanjing Wang ◽  
Mingming Jiang ◽  
...  
Author(s):  
Hai Tao ◽  
Maria Habib ◽  
Ibrahim Aljarah ◽  
Hossam Faris ◽  
Haitham Abdulmohsin Afan ◽  
...  

Electronics ◽  
2020 ◽  
Vol 9 (10) ◽  
pp. 1565
Author(s):  
Muhammad Aminu Lawal ◽  
Riaz Ahmed Shaikh ◽  
Syed Raheel Hassan

The advancement in IoT has prompted its application in areas such as smart homes, smart cities, etc., and this has aided its exponential growth. However, alongside this development, IoT networks are experiencing a rise in security challenges such as botnet attacks, which often appear as network anomalies. Similarly, providing security solutions has been challenging due to the low resources that characterize the devices in IoT networks. To overcome these challenges, the fog computing paradigm has provided an enabling environment that offers additional resources for deploying security solutions such as anomaly mitigation schemes. In this paper, we propose a hybrid anomaly mitigation framework for IoT using fog computing to ensure faster and accurate anomaly detection. The framework employs signature- and anomaly-based detection methodologies for its two modules, respectively. The signature-based module utilizes a database of attack sources (blacklisted IP addresses) to ensure faster detection when attacks are executed from the blacklisted IP address, while the anomaly-based module uses an extreme gradient boosting algorithm for accurate classification of network traffic flow into normal or abnormal. We evaluated the performance of both modules using an IoT-based dataset in terms response time for the signature-based module and accuracy in binary and multiclass classification for the anomaly-based module. The results show that the signature-based module achieves a fast attack detection of at least six times faster than the anomaly-based module in each number of instances evaluated. The anomaly-based module using the XGBoost classifier detects attacks with an accuracy of 99% and at least 97% for average recall, average precision, and average F1 score for binary and multiclass classification. Additionally, it recorded 0.05 in terms of false-positive rates.


Author(s):  
Marco Febriadi Kokasih ◽  
Adi Suryaputra Paramita

Online marketplace in the field of property renting like Airbnb is growing. Many property owners have begun renting out their properties to fulfil this demand. Determining a fair price for both property owners and tourists is a challenge. Therefore, this study aims to create a software that can create a prediction model for property rent price. Variable that will be used for this study is listing feature, neighbourhood, review, date and host information. Prediction model is created based on the dataset given by the user and processed with Extreme Gradient Boosting algorithm which then will be stored in the system. The result of this study is expected to create prediction models for property rent price for property owners and tourists consideration when considering to rent a property. In conclusion, Extreme Gradient Boosting algorithm is able to create property rental price prediction with the average of RMSE of 10.86 or 13.30%.


2021 ◽  
Vol 25 (Spec. issue 1) ◽  
pp. 1-7
Author(s):  
Ahmet Yurttakal

The thermal conductivity estimation for the soil is an important step for many geothermal applications. But it is a difficult and complicated process since it involves a variety of factors that have significant effects on the thermal conductivity of soils such as soil moisture and granular structure. In this study, regression was performed with the extreme gradient boosting algorithm to develop a model for estimating thermal conductivity value. The performance of the model was measured on the unseen test data. As a result, the proposed algorithm reached 0.18 RMSE, 0.99 R2, and 3.18% MAE values which state that the algorithm is encouraging.


2021 ◽  
Vol 2021 ◽  
pp. 1-15
Author(s):  
Dan Zhang ◽  
Hua-Dong Chen ◽  
Hasan Zulfiqar ◽  
Shi-Shi Yuan ◽  
Qin-Lai Huang ◽  
...  

Bioluminescent proteins (BLPs) are a class of proteins that widely distributed in many living organisms with various mechanisms of light emission including bioluminescence and chemiluminescence from luminous organisms. Bioluminescence has been commonly used in various analytical research methods of cellular processes, such as gene expression analysis, drug discovery, cellular imaging, and toxicity determination. However, the identification of bioluminescent proteins is challenging as they share poor sequence similarities among them. In this paper, we briefly reviewed the development of the computational identification of BLPs and subsequently proposed a novel predicting framework for identifying BLPs based on eXtreme gradient boosting algorithm (XGBoost) and using sequence-derived features. To train the models, we collected BLP data from bacteria, eukaryote, and archaea. Then, for getting more effective prediction models, we examined the performances of different feature extraction methods and their combinations as well as classification algorithms. Finally, based on the optimal model, a novel predictor named iBLP was constructed to identify BLPs. The robustness of iBLP has been proved by experiments on training and independent datasets. Comparison with other published method further demonstrated that the proposed method is powerful and could provide good performance for BLP identification. The webserver and software package for BLP identification are freely available at http://lin-group.cn/server/iBLP.


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