scholarly journals Magnetic Resonance Imaging Sequence Identification Using a Metadata Learning Approach

2021 ◽  
Vol 15 ◽  
Author(s):  
Shuai Liang ◽  
Derek Beaton ◽  
Stephen R. Arnott ◽  
Tom Gee ◽  
Mojdeh Zamyadi ◽  
...  

Despite the wide application of the magnetic resonance imaging (MRI) technique, there are no widely used standards on naming and describing MRI sequences. The absence of consistent naming conventions presents a major challenge in automating image processing since most MRI software require a priori knowledge of the type of the MRI sequences to be processed. This issue becomes increasingly critical with the current efforts toward open-sharing of MRI data in the neuroscience community. This manuscript reports an MRI sequence detection method using imaging metadata and a supervised machine learning technique. Three datasets from the Brain Center for Ontario Data Exploration (Brain-CODE) data platform, each involving MRI data from multiple research institutes, are used to build and test our model. The preliminary results show that a random forest model can be trained to accurately identify MRI sequence types, and to recognize MRI scans that do not belong to any of the known sequence types. Therefore the proposed approach can be used to automate processing of MRI data that involves a large number of variations in sequence names, and to help standardize sequence naming in ongoing data collections. This study highlights the potential of the machine learning approaches in helping manage health data.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
James T. Grist ◽  
Stephanie Withey ◽  
Christopher Bennett ◽  
Heather E. L. Rose ◽  
Lesley MacPherson ◽  
...  

AbstractBrain tumors represent the highest cause of mortality in the pediatric oncological population. Diagnosis is commonly performed with magnetic resonance imaging. Survival biomarkers are challenging to identify due to the relatively low numbers of individual tumor types. 69 children with biopsy-confirmed brain tumors were recruited into this study. All participants had perfusion and diffusion weighted imaging performed at diagnosis. Imaging data were processed using conventional methods, and a Bayesian survival analysis performed. Unsupervised and supervised machine learning were performed with the survival features, to determine novel sub-groups related to survival. Sub-group analysis was undertaken to understand differences in imaging features. Survival analysis showed that a combination of diffusion and perfusion imaging were able to determine two novel sub-groups of brain tumors with different survival characteristics (p < 0.01), which were subsequently classified with high accuracy (98%) by a neural network. Analysis of high-grade tumors showed a marked difference in survival (p = 0.029) between the two clusters with high risk and low risk imaging features. This study has developed a novel model of survival for pediatric brain tumors. Tumor perfusion plays a key role in determining survival and should be considered as a high priority for future imaging protocols.


2017 ◽  
Vol 56 (6) ◽  
pp. 806-812 ◽  
Author(s):  
Turid Torheim ◽  
Eirik Malinen ◽  
Knut Håkon Hole ◽  
Kjersti Vassmo Lund ◽  
Ulf G. Indahl ◽  
...  

2015 ◽  
Vol 59 (2) ◽  
pp. 317-319
Author(s):  
Zbigniew Adamiak ◽  
Yauheni Zhalniarovich ◽  
Paulina Przyborowska ◽  
Joanna Głodek ◽  
Adam Przeworski

AbstractThe aim of the study was to identify magnetic resonance imaging (MRI) sequences that contribute to a quick and reliable diagnosis of brachial plexus tumours in dogs. The tumours were successfully diagnosed in 6 dogs by the MRI with the use of SE, FSE, STIR, Turbo 3 D, 3D HYCE, and GE sequences and the gadolinium contrast agent


2017 ◽  
Vol 23 ◽  
pp. 2168-2178 ◽  
Author(s):  
Jiang-bo Qin ◽  
Zhenyu Liu ◽  
Hui Zhang ◽  
Chen Shen ◽  
Xiao-chun Wang ◽  
...  

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