scholarly journals Cytogenomics Unveil Possible Transposable Elements Driving Rearrangements in Chromosomes 2 and 4 of Solea senegalensis

2021 ◽  
Vol 22 (4) ◽  
pp. 1614
Author(s):  
María Esther Rodríguez ◽  
Ismael Cross ◽  
Alberto Arias-Pérez ◽  
Silvia Portela-Bens ◽  
Manuel Alejandro Merlo ◽  
...  
Keyword(s):  
Transposable Elements ◽  
Fish Species ◽  
Gasterosteus Aculeatus ◽  
Sparus Aurata ◽  
Chromosomal Rearrangements ◽  
Scophthalmus Maximus ◽  
Cynoglossus Semilaevis ◽  
Solea Senegalensis ◽  
Reference Species ◽  
Artificial Chromosomes

Cytogenomics, the integration of cytogenetic and genomic data, has been used here to reconstruct the evolution of chromosomes 2 and 4 of Solea senegalensis. S. senegalensis is a flat fish with a karyotype comprising 2n = 42 chromosomes: 6 metacentric + 4 submetacentric + 8 subtelocentric + 24 telocentric. The Fluorescence in situ Hybridization with Bacterial Artificial Chromosomes (FISH-BAC) technique was applied to locate BACs in these chromosomes (11 and 10 BACs in chromosomes 2 and 4, respectively) and to generate integrated maps. Synteny analysis, taking eight reference fish species (Cynoglossus semilaevis, Scophthalmus maximus, Sparus aurata, Gasterosteus aculeatus, Xiphophorus maculatus, Oryzias latipes, Danio rerio, and Lepisosteus oculatus) for comparison, showed that the BACs of these two chromosomes of S. senegalensis were mainly distributed in two principal chromosomes in the reference species. Transposable Elements (TE) analysis showed significant differences between the two chromosomes, in terms of number of loci per Mb and coverage, and the class of TE (I or II) present. Analysis of TE divergence in chromosomes 2 and 4 compared to their syntenic regions in four reference fish species (C. semilaevis, S. maximus, O. latipes, and D. rerio) revealed differences in their age of activity compared with those species but less notable differences between the two chromosomes. Differences were also observed in peaks of divergence and coverage of TE families for all reference species even in those close to S. senegalensis, like S. maximus and C. semilaevis. Considered together, chromosomes 2 and 4 have evolved by Robertsonian fusions, pericentric inversions, and other chromosomal rearrangements mediated by TEs.

Comparative toxicity of cadmium in the commercial fish species Sparus aurata and Solea senegalensis

2010 ◽  
Vol 73 (3) ◽  
pp. 306-311 ◽  
Author(s):  
Judit Kalman ◽  
Inmaculada Riba ◽  
T. Ángel DelValls ◽  
Julián Blasco
Keyword(s):  
Fish Species ◽  
Sparus Aurata ◽  
Solea Senegalensis ◽  
Commercial Fish ◽  
Comparative Toxicity

scholarly journals Transposable Elements and Teleost Migratory Behaviour

2021 ◽  
Vol 22 (2) ◽  
pp. 602
Author(s):  
Elisa Carotti ◽  
Federica Carducci ◽  
Adriana Canapa ◽  
Marco Barucca ◽  
Samuele Greco ◽  
...  
Keyword(s):  
Transposable Elements ◽  
Environmental Changes ◽  
Chromosomal Rearrangements ◽  
Quantitative Difference ◽  
Regulatory Elements ◽  
Phylogenetic Position ◽  
Migratory Behaviour ◽  
Relative Contribution ◽  
Migratory Routes ◽  
Eukaryotic Genomes

Transposable elements (TEs) represent a considerable fraction of eukaryotic genomes, thereby contributing to genome size, chromosomal rearrangements, and to the generation of new coding genes or regulatory elements. An increasing number of works have reported a link between the genomic abundance of TEs and the adaptation to specific environmental conditions. Diadromy represents a fascinating feature of fish, protagonists of migratory routes between marine and freshwater for reproduction. In this work, we investigated the genomes of 24 fish species, including 15 teleosts with a migratory behaviour. The expected higher relative abundance of DNA transposons in ray-finned fish compared with the other fish groups was not confirmed by the analysis of the dataset considered. The relative contribution of different TE types in migratory ray-finned species did not show clear differences between oceanodromous and potamodromous fish. On the contrary, a remarkable relationship between migratory behaviour and the quantitative difference reported for short interspersed nuclear (retro)elements (SINEs) emerged from the comparison between anadromous and catadromous species, independently from their phylogenetic position. This aspect is likely due to the substantial environmental changes faced by diadromous species during their migratory routes.

scholarly journals Prevalence of Anisakis Larvae in Different Fish Species in Southern Albania: Five-Year Monitoring (2016–2020)

2021 ◽  
Vol 11 (23) ◽  
pp. 11528
Author(s):  
Enkeleda Ozuni ◽  
Ani Vodica ◽  
Marta Castrica ◽  
Gabriele Brecchia ◽  
Giulio Curone ◽  
...  
Keyword(s):  
Fish Species ◽  
Coastal Area ◽  
Sparus Aurata ◽  
Dicentrarchus Labrax ◽  
Health Impact ◽  
Coelomic Cavity ◽  
Farmed Fish ◽  
Risk Area ◽  
High Risk Area ◽  
Negative Results

Anisakidae are nematodes that commonly parasitize in the coelomic cavity and viscera of several fish species. They can be found in flesh, which is why they have an important economic and public health impact. The aim of the current work was to assess the presence and prevalence of Anisakis larvae in fish species caught in the coastal area of the Karaburun Peninsula in Vlora Bay (Albania). A total of 856 of wild teleosts and 219 specimens of farmed fish were collected over a 5-year period (from 2016 to 2020). The results showed that out of a total of 1075 analyzed samples, 361 (33.58%) were parasitized with L3 larvae. In particular, only Solea vulgaris returned negative results, while Sparus aurata, Dicentrarchus labrax, and Sardinella aurita showed the lowest prevalence (4.55%, 9.17%, and 10.53%, respectively) and mean abundance (0.84, 1.19, and 0.92, respectively). Conversely, Scomber japonicus and Scomber scombrus showed the highest prevalence (74.07% and 68.00%, respectively) and mean abundance (188.24 and 249.82, respectively). The data suggest that the coastal area of the Karaburun Peninsula (southern Albania) may be a high-risk area for zoonotic diseases, and the consumption of raw or undercooked fish caught in the Vlora district could result in the acquisition of human anisakiasis. For these reasons, it is necessary to improve the surveillance plan.

Comparative energetics during early development of two marine fish species, Solea senegalensis (Kaup) and Sparus aurata (L.)

2001 ◽  
Vol 204 (12) ◽  
pp. 2175-2183 ◽  
Author(s):  
G. Parra ◽  
M. Yúfera
Keyword(s):  
Growth Rate ◽  
Specific Growth Rate ◽  
Marine Fish ◽  
Specific Growth ◽  
Sparus Aurata ◽  
Energy Content ◽  
Experimental Period ◽  
Solea Senegalensis ◽  
Ingestion Rates ◽  
Respiration Rates

SUMMARY Growth, energy content, ingestion and respiration rates and energetic efficiencies were measured in the larvae of two marine fish (Solea senegalensis and Sparus aurata) whose eggs have a similar diameter (approximately 1mm) and energy content (approximately 1J), but whose larvae reach a quite different mass after the first month of life. Experiments were carried out in populations reared under the same conditions in the laboratory during the first month after hatching. Solea senegalensis grow from hatching to the start of metamorphosis (approximately day 14) at twice the rate of Sparus aurata (specific growth rate for Solea senegalensis 0.25μgday−1; specific growth rate for Sparus aurata 0.12μgday−1). The tissues in Solea senegalensis larvae accumulated energetic reserves that were used during metamorphosis, which occurred during the third week after hatching. Ingestion and respiration rates differed in the two species during the experimental period. Although Solea senegalensis continued eating during metamorphosis, the specific ingestion rates decreased during the process. Nevertheless, no great differences in specific ingestion rates and rates of oxygen consumption were observed when comparing the same larval mass range. Larvae of both species showed an allometric relationship between respiration rate and biomass. The energetic efficiencies calculated in the present study denoted different metabolic patterns in each species. In Solea senegalensis, the energy used for growth increased progressively during the larval (pelagic) period and then, from the first signs of metamorphic transformation, remained almost constant. In this species, the energy allocated to growth was greater than that allocated to metabolic processes. Sparus aurata invested less energy in growth than in metabolic processes and displayed a constant energy allocation throughout the experimental period. During the first month after hatching, Solea senegalensis always allocated more energy for growth than did Sparus aurata.

scholarly journals Mycobacterium pseudoshottsii in Mediterranean Fish Farms: New Trouble for European Aquaculture?

Pathogens ◽  
2020 ◽  
Vol 9 (8) ◽  
pp. 610
Author(s):  
Davide Mugetti ◽  
Katia Varello ◽  
Andrea Gustinelli ◽  
Paolo Pastorino ◽  
Vasco Menconi ◽  
...  
Keyword(s):  
Fish Species ◽  
Sparus Aurata ◽  
Dicentrarchus Labrax ◽  
Housekeeping Genes ◽  
The United States ◽  
Sciaenops Ocellatus ◽  
Fish Farms ◽  
Farmed Fish ◽  
Potential Threat ◽  
European Aquaculture

Mycobacterium pseudoshottsii, a slow-growing mycobacterium closely related to M. marinum, has been isolated only in wild fish in the United States and in Japanese fish farms to date. Here, we report cases of mortality in three farmed fish species (Dicentrarchus labrax, Sparus aurata, and Sciaenops ocellatus) caused by M. pseudoshottsii in Italy. Samples underwent necropsy, histology, and culture with pathogen identification based on PCR and sequencing of housekeeping genes (16S rRNA, hsp65, rpoB). Multifocal to coalescing granulomatous and necrotizing inflammation with acid-fast bacilli were observed in the parenchymatous organs, from which M. pseudoshottsii was isolated and identified. Phylogenetic analysis confirmed the results of gene sequencing and allowed subdivision of the isolates into three distinct groups. M. pseudoshottsii poses a potential threat for Mediterranean aquaculture. Its origin in the area under study needs to be clarified, as well as the threat to the farmed fish species.

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