scholarly journals RNAi and CRISPR/Cas9 as Functional Genomics Tools in the Neotropical Stink Bug, Euschistus heros

Insects ◽  
2020 ◽  
Vol 11 (12) ◽  
pp. 838
Author(s):  
Deise Cagliari ◽  
Guy Smagghe ◽  
Moises Zotti ◽  
Clauvis Nji Tizi Taning
Keyword(s):  
Functional Genomics ◽  
Gene Knockout ◽  
Management Strategies ◽  
Wing Disc ◽  
Functional Genomic ◽  
Stink Bug ◽  
Euschistus Heros ◽  
Genomic Studies ◽  
Genomics Tools ◽  
Melanin Pathway

The Neotropical brown stink bug, Euschistus heros, is one of the most important stink bug pests in leguminous plants in South America. RNAi and CRISPR/Cas9 are important and useful tools in functional genomics, as well as in the future development of new integrated pest management strategies. Here, we explore the use of these technologies as complementing functional genomic tools in E. heros. Three genes, abnormal wing disc (awd), tyrosine hydroxylase (th) and yellow (yel), known to be involved in wing development (awd) and the melanin pathway (th and yel) in other insects, were chosen to be evaluated using RNAi and CRISPR/Cas9 as tools. First, the genes were functionally characterized using RNAi knockdown technology. The expected phenotype of either deformed wing or lighter cuticle pigmentation/defects in cuticle sclerotization was observed for awd and th, respectively. However, for yel, no obvious phenotype was observed. Based on this, yel was selected as a target for the development of a CRISPR/Cas9 workflow to study gene knockout in E. heros. A total of 719 eggs were injected with the Cas9 nuclease (300 ng/µL) together with the sgRNA (300 ng/µL) targeting yel. A total of six insects successfully hatched from the injected eggs and one of the insects showed mutation in the target region, however, the phenotype was still not obvious. Overall, this study for the first time provides a useful CRISPR/Cas9 gene editing methodology to complement RNAi for functional genomic studies in one of the most important and economically relevant stink bug species.

scholarly journals How form follows functional genomics: gene expression profiling gastric epithelial cells with a particular discourse on the parietal cell

2009 ◽  
Vol 37 (2) ◽  
pp. 67-78 ◽  
Author(s):  
Benjamin J. Capoccia ◽  
Won Jae Huh ◽  
Jason C. Mills
Keyword(s):  
Gene Expression ◽  
Functional Genomics ◽  
Parietal Cell ◽  
The Body ◽  
Cell Physiology ◽  
Functional Genomic ◽  
Gastric Parietal Cell ◽  
Cell Lineages ◽  
Genomic Studies ◽  
The Impact

The cellular composition and morphology of the stomach epithelium have been described in detail; however, the molecular mechanisms that regulate the differentiation of the various cell lineages as well as the function of mature gastric cells are far less clear. Recently, dissection of the molecular anatomy of the stomach has been boosted by the advent of functional genomics, which allows investigators to determine patterns of gene expression across virtually the entire cellular transcriptome. In this review, we discuss the impact of functional genomic studies on the understanding of gastric epithelial physiology. We show how functional genomic studies have uncovered genes that are useful as new cell lineage-specific markers of differentiation and provide new insights into cell physiology. For example, vascular endothelial growth factor B (Vegfb) has been identified as a parietal cell-specific marker that may allow parietal cells to regulate the mucosal vascular network. We also discuss how functional genomics has identified aberrantly expressed genes in disease states. Human epididymis 4 (HE4), for example, was recently identified as a metaplasia-induced gene product in mice based on microarray analysis. Finally, we will examine how analysis of higher-order patterns of gene expression can go beyond simply identifying individual genes to show how cells work as integrated systems. Specifically, we show how application of a Gene Ontology (GO) analysis of gene expression patterns from multiple tissues identifies the gastric parietal cell as an outlier, unlike other differentiated cell lineages in the stomach or elsewhere in the body.

scholarly journals Inhibitory Copulation Effect of Vibrational Rival Female Signals of Three Stink Bug Species as a Tool for Mating Disruption

Insects ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 177
Author(s):  
Aline Moreira Dias ◽  
Miguel Borges ◽  
Maria Carolina Blassioli Moraes ◽  
Matheus Lorran Figueira Coelho ◽  
Andrej Čokl ◽  
...  
Keyword(s):  
Pest Management ◽  
Mating Behavior ◽  
Mating Disruption ◽  
Management Strategies ◽  
Stink Bug ◽  
Stink Bugs ◽  
Vibratory Communication ◽  
Communication Signals ◽  
Long Duration ◽  
Bean Plants

Stink bugs are major pests in diverse crops around the world. Pest management strategies based on insect behavioral manipulation could help to develop biorational management strategies of stink bugs. Insect mating disruption using vibratory signals is an approach with high potential for pest management. The objective of this work was to investigate the effect of conspecific female rival signals on the mating behavior and copulation of three stink bug species to establish their potential for mating disruption. Previously recorded female rival signals were played back to bean plants where pairs of the Neotropical brown stink bug, Euschistus heros, and two green stink bugs, Chinavia ubica and Chinavia impicticornis were placed. Vibratory communication and mating behavior were recorded for each pair throughout the experimental time (20 min). Female rival signals show a disrupting effect on the reproductive behavior of three conspecific investigated stink bug species. This effect was more clearly expressed in E. heros and C. ubica than in C. impicticornis. The likelihood of copulating in pairs placed on control plants, without rival signals, increased 29.41 times in E. heros, 4.6 times in C. ubica and 1.71 times in C. impicticornis. However, in the last case, the effect of female rivalry signals in copulation was not significant. The effect of mating disruption of female rival signals of the three stink bug species may originate from the observed reduction in specific vibratory communication signals emitted, which influences the duet formation and further development of different phases of mating behavior. Our results suggest that female rival signals have potential for application in manipulation and disruption of mating behavior of stink bugs. Further work needs to focus on the effects of female rival signals used in long duration experiments and also their interactions with chemical communication of stink bugs.

TEAseq-based identification of 35,696 Dissociation insertional mutations facilitates functional genomic studies in maize

2021 ◽  
Author(s):  
Mingjie Lyu ◽  
Huafeng Liu ◽  
Joram Kiriga Waititu ◽  
Ying Sun ◽  
Huan Wang ◽  
...  
Keyword(s):  
Functional Genomic ◽  
Genomic Studies

scholarly journals Learning a genome-wide score of human–mouse conservation at the functional genomics level

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Soo Bin Kwon ◽  
Jason Ernst
Keyword(s):  
Mouse Model ◽  
Functional Genomics ◽  
Functional Genomic ◽  
Transcriptomic Data ◽  
Model Studies ◽  
Genome Wide ◽  
A Genome ◽  
Important Challenge ◽  
Genomic Regions ◽  
Human And Mouse

AbstractIdentifying genomic regions with functional genomic properties that are conserved between human and mouse is an important challenge in the context of mouse model studies. To address this, we develop a method to learn a score of evidence of conservation at the functional genomics level by integrating information from a compendium of epigenomic, transcription factor binding, and transcriptomic data from human and mouse. The method, Learning Evidence of Conservation from Integrated Functional genomic annotations (LECIF), trains neural networks to generate this score for the human and mouse genomes. The resulting LECIF score highlights human and mouse regions with shared functional genomic properties and captures correspondence of biologically similar human and mouse annotations. Analysis with independent datasets shows the score also highlights loci associated with similar phenotypes in both species. LECIF will be a resource for mouse model studies by identifying loci whose functional genomic properties are likely conserved.

New approaches for functional genomic studies in staphylococci

2010 ◽  
Vol 300 (2-3) ◽  
pp. 88-97 ◽  
Author(s):  
Marie Beaume ◽  
David Hernandez ◽  
Patrice Francois ◽  
Jacques Schrenzel
Keyword(s):  
Functional Genomic ◽  
New Approaches ◽  
Genomic Studies

scholarly journals Relationship Between Invasive Brown Marmorated Stink Bug (Halyomorpha halys) and Fumonisin Contamination of Field Corn in the Mid-Atlantic U.S.

Plant Disease ◽  
2019 ◽  
Vol 103 (6) ◽  
pp. 1189-1195 ◽  
Author(s):  
Joseph Opoku ◽  
Nathan M. Kleczewski ◽  
Kelly A. Hamby ◽  
D. Ames Herbert ◽  
Sean Malone ◽  
...  
Keyword(s):  
Field Experiments ◽  
Block Design ◽  
Fusarium Verticillioides ◽  
Management Strategies ◽  
Halyomorpha Halys ◽  
Brown Marmorated Stink Bug ◽  
Stink Bug ◽  
Feeding Damage ◽  
Fusarium Infection ◽  
Field Corn

Brown marmorated stink bug (Halyomorpha halys Stål) is an invasive agricultural pest that causes severe damage to many crops. To determine potential associations between H. halys feeding damage, Fusarium infection, and mycotoxin contamination in field corn, a field survey was conducted in eight counties in Virginia. Results indicated an association between H. halys feeding damage and fumonisin contamination. Subsequent field experiments in Delaware, Maryland, and Virginia examined the ability of H. halys to increase Fusarium verticillioides (Sacc.) Nirenberg infection and fumonisin concentrations in corn. At the milk stage, H. halys (0 or 4 adults) and Fusarium (with or without F. verticillioides inoculum) treatments were applied to bagged ears in a two by two factorial randomized complete block design with 12 replicates. H. halys treatments increased levels of feeding damage (P < 0.0001) and Fusarium infection (P = 0.0380). Interaction between H. halys and Fusarium treatments influenced severity of infection (P = 0.0018) and fumonisin concentrations (P = 0.0360). Results suggest H. halys has the ability to increase both Fusarium infection and fumonisin concentrations in field corn. Further studies are needed to understand mechanisms by which H. halys increases fumonisin and to develop management strategies to mitigate impacts of H. halys on field corn in the region.

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