Prediction of Protein-Protein Interactions from Amino Acid Sequences Based on Continuous and Discrete Wavelet Transform Features

Molecules ◽

10.3390/molecules23040823 ◽

2018 ◽

Vol 23 (4) ◽

pp. 823 ◽

Author(s):

Tao Wang ◽

Liping Li ◽

Yu-An Huang ◽

Hui Zhang ◽

Yahong Ma ◽

...

Keyword(s):

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Protein Interactions ◽

Amino Acid Sequences ◽

Discrete Wavelet ◽

Protein Protein Interactions

Download Full-text

OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2011.06.014 ◽

2011 ◽

Vol 30 ◽

pp. 129-134 ◽

Author(s):

Jian-Ding Qiu ◽

Sheng-Bao Suo ◽

Xing-Yu Sun ◽

Shao-Ping Shi ◽

Ru-Ping Liang

Keyword(s):

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

Oligomeric Proteins

Download Full-text

Predicting Protein-Protein Interactions from Amino Acid Sequences Using SaE-ELM Combined with Continuous Wavelet Descriptor and PseAA Composition

Intelligent Computing Theories and Methodologies - Lecture Notes in Computer Science ◽

10.1007/978-3-319-22186-1_63 ◽

2015 ◽

pp. 634-645 ◽

Author(s):

Yu-An Huang ◽

Zhu-Hong You ◽

Jianqiang Li ◽

Leon Wong ◽

Shubin Cai

Keyword(s):

Protein Interactions ◽

Amino Acid Sequences ◽

Continuous Wavelet ◽

Protein Protein Interactions ◽

Wavelet Descriptor

Download Full-text

Detection of Protein-Protein Interactions from Amino Acid Sequences Using a Rotation Forest Model with a Novel PR-LPQ Descriptor

Lecture Notes in Computer Science - Advanced Intelligent Computing Theories and Applications ◽

10.1007/978-3-319-22053-6_75 ◽

2015 ◽

pp. 713-720 ◽

Author(s):

Leon Wong ◽

Zhu-Hong You ◽

Shuai Li ◽

Yu-An Huang ◽

Gang Liu

Keyword(s):

Protein Interactions ◽

Amino Acid Sequences ◽

Protein Protein Interactions ◽

Rotation Forest ◽

Download Full-text

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

BMC Bioinformatics ◽

10.1186/1471-2105-14-s8-s10 ◽

2013 ◽

Vol 14 (S8) ◽

Author(s):

Zhu-Hong You ◽

Ying-Ke Lei ◽

Lin Zhu ◽

Junfeng Xia ◽

Bing Wang

Keyword(s):

Principal Component Analysis ◽

Protein Interactions ◽

Principal Component ◽

Component Analysis ◽

Amino Acid Sequences ◽

Extreme Learning Machines ◽

Protein Protein Interactions ◽

Learning Machines

Download Full-text

Identify submitochondria and subchloroplast locations with pseudo amino acid composition: Approach from the strategy of discrete wavelet transform feature extraction

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research ◽

10.1016/j.bbamcr.2011.01.011 ◽

2011 ◽

Vol 1813 (3) ◽

pp. 424-430 ◽

Author(s):

Shao-Ping Shi ◽

Jian-Ding Qiu ◽

Xing-Yu Sun ◽

Jian-Hua Huang ◽

Shu-Yun Huang ◽

...

Keyword(s):

Feature Extraction ◽

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition

Download Full-text

Using the Concept of Chous Pseudo Amino Acid Composition to Predict Enzyme Family Classes: An Approach with Support Vector Machine Based on Discrete Wavelet Transform

Protein and Peptide Letters ◽

10.2174/092986610791190372 ◽

2010 ◽

Vol 17 (6) ◽

pp. 715-722 ◽

Author(s):

Jian-Ding Qiu ◽

Jian-Hua Huang ◽

Shao-Ping Shi ◽

Ru-Ping Liang

Keyword(s):

Support Vector Machine ◽

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

Download Full-text

Prediction of G-protein-coupled receptor classes based on the concept of Chou’s pseudo amino acid composition: An approach from discrete wavelet transform

Analytical Biochemistry ◽

10.1016/j.ab.2009.04.009 ◽

2009 ◽

Vol 390 (1) ◽

pp. 68-73 ◽

Author(s):

Jian-Ding Qiu ◽

Jian-Hua Huang ◽

Ru-Ping Liang ◽

Xiao-Quan Lu

Keyword(s):

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

G Protein ◽

Acid Composition ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

G Protein Coupled Receptor ◽

G Protein Coupled

Download Full-text

Prediction of protein-protein interactions from amino acid sequences using extreme learning machine combined with auto covariance descriptor

2013 IEEE Workshop on Memetic Computing (MC) ◽

10.1109/mc.2013.6608211 ◽

2013 ◽

Author(s):

Zhu-Hong You ◽

Liping Li ◽

Zhen Ji ◽

Min Li ◽

Sen Guo

Keyword(s):

Extreme Learning Machine ◽

Protein Interactions ◽

Amino Acid Sequences ◽

Protein Protein Interactions ◽

Covariance Descriptor ◽

Learning Machine ◽

Auto Covariance

Download Full-text

A novel matrix of sequence descriptors for predicting protein-protein interactions from amino acid sequences

PLoS ONE ◽

10.1371/journal.pone.0217312 ◽

2019 ◽

Vol 14 (6) ◽

pp. e0217312 ◽

Author(s):

Xue Wang ◽

Yuejin Wu ◽

Rujing Wang ◽

Yuanyuan Wei ◽

Yuanmiao Gui

Keyword(s):

Protein Interactions ◽

Amino Acid Sequences ◽

Protein Protein Interactions

Download Full-text

Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set

BMC Bioinformatics ◽

10.1186/1471-2105-15-s15-s9 ◽

2014 ◽

Vol 15 (Suppl 15) ◽

pp. S9 ◽

Author(s):

Zhu-Hong You ◽

Lin Zhu ◽

Chun-Hou Zheng ◽

Hong-Jie Yu ◽

Su-Ping Deng ◽

...

Keyword(s):

Protein Interactions ◽

Amino Acid Sequences ◽

Protein Protein Interactions ◽

Download Full-text